si:dkey-283b1.7 (si:dkey-283b1.7,LOC107758487,LOC107695187,LOC107689703,LOC107554098,LOC107737768)


Basic Information

Item Value
gene id si:dkey-283b1.7
gene name si:dkey-283b1.7,LOC107758487,LOC107695187,LOC107689703,LOC107554098,LOC107737768
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12515150 ~ 12521787 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235147.1
ttcttATCGAAGCCACCcttaacacaaaaacacagttgCCTGCAAGCTTGTCTGGTGGCATTCAGAGGAGGGTCATTTTCTCTTGTGTATGTCACAGGGCATACGTTTATGCACTGCCCCACGCGCATGATGACAATCCAGACCTCAACGTAATGCCGGTAAGGATGAGATCCCTCGTCCTTTGCATCTCGTTTGCACTCCAGTGCTTCGTTCTCCAAAGCGCATCAGAGTATTCTTCAAAATCCGAGCTGGAGTACGAATTCGGCGACTATCGCGGCAAGTTCTGCATCGACGACcaaggttttgtttacagcatCGGAGAGGTCTATTACCCGAGCTCCACAGCGTGTCCCTGCACCTGCACAGAGGATGGACCCGTGTGTGTCCGACCCAAGTGCCCGCGTATACACCCGAGATGCACTCGCATCAAATACAGGTCCTGCTGCCCCGTGTGTGAAGCTGTCAGTAAAGTCTGCGTGTACGGCGGGAAAACTTACAGAATGCTGGAGGAATTTAGGCTGTCACCCTGTGAGCGCTGCCGGTGCGAAGTCAACAGAGAAGTTTACTGCACCATATCCGGCTGCCCTGCCTTACATTGTGTGAATCCTGTATACGAACCCAACCATTGCTGTCCCGTGTGTAAAAATGGGCCAAACTGCTTTGCTGGAAACCGCGTGATCTCGGCTGGAGAGCGCGTCGAGATTGACGAGCAGACGGTGTGTTTCTGCACCTACCGGGACGGAACGTGGCAGACGCACCCTCACGCTACCTGCGAGGAGCGCCAGCGAGCAGACAATGAAGCCACCGACTCCGACGGCACATCTAAACAGATGGAGGAGCaggagatggagaaagagaaagagagagtgttcTTTCCCAGGTTGGATGCCATCCCGTGAAGCGAAGTGTGCCTGGCAGCAGCTCTCCTGACAGGCAGGAGGGGATGCAGAGCACCGTGCAGGTGTCTGTGCCCAGGGTAAACACAACCTGCGCTGGGATAACTGCCAATGCTGACCTCTCTAGCCAACCTCACCACCCCCTCCATCCTGACCCAGATCGGCAACCCACTGACAAGCAACATGCACTAATAAAATGTTCCATTATTATACACGGCACACTTGTTGTTCAGAAATTAGGAGTCTGTAATGCTGataattcagttttgccatcacaggaataaatgacattttaaaatatgttcaaatagaaagtagttattttaaattgcaatgatatttcacaatatcgcTTTCTTTGTGATCAACCAAATGCAGGTTGAGACTcacttaaaacattttcaaatcttaCAGACGccacatttttgaatggtagcttaaatatgtgtatattactgtatatcACGTTGTCCACTTCTTACAAAGAtgcaatataaattaaatatggagCATTGTATTCCCCATTTTCCCAACTCATTTTAGATGCAAGTTGTGTTAATGGGCACATTGCATACTTTTAAagttaatgaaaatagtttGATGTTTAAACGATTTATTCCATGTCCCATATGCCACTTTGATTAACAACTTCAATGTTCGTTCCAAACtaatactgaaaatatcatactgtatatgtaacCAGTAAAATTATGTTCTCCTTTAAGAAGATTAACcttcttgtttaaaaaagaagtgGAGCATGCAAtaagaaacatattttcaaaGGGCTGGTCAAATGGAAACATAATTAGAGTATTAAAGTCATCTCAGGTTTCA
>XM_043235148.1
tccttctgtttgttttgttgcggtcataaatacagtacaaaggCTCGGTCTGACTCAACACCAGTGTAACTAGAACAAAGTCATCAATGGACGTGAAGGACAGAGTTGCTTGGCTTTACTTCATGTTACATCAGTTGTTGTGAGGAGTAATGTTACACAAGCTTcatgcaaaacacacaaaaacagatcCTCCCCTCAGTCTGAAACTGTCTGATTAATGATAAGAAAGCAGCTGCCACAGCAGAAAACGTGAGTCATCTGCCCTGGTTCCCACATCCATCAAAGTTGAGCACTGGTGCATATGTAGACCTTAAACTAGTATATGAATAGTTGACGTGTCGAGCAGGGGTCATGTGGTGGCATGCTATACATATTCTAAACTGTTTAAGacaacatttttctaaatcttatttaaatataatacatgtaCTTATAGCACCTCTTAATAACTGAAATACTACATGTACGATTTGTACAATTGTACTATTGAGACGCAGGTACTATTACTTATTTCTTAGCTATTAGTAACCATGCcaatgaacacacaaacacatacaaatattatatagtaacattaaaaaattaagaacctaaatttgttatttaaaatgtaattacatgcatataataaatagctactaatgatattaaaatgaaagctaGTTCCTCGGttgtaaaataactattaaaacacATACTACCTTATTATTAGTGTTCAATATTCAGAGGTAATCTTGACAGGTTGATTATTTTAGTAACAAAGCCAttataatgtttgcatttttaagtagtttttctccctcatttttattttaaattggttACATTGGTAATTCTCttgtatatttttgtcatatgaATTAGTCTAGCTTTagatattttagtacatcaaggaAGTAAAGTTTGTTCATTGTTTACGTGGTGTTTAAACTTTGGGAccatgaacaaaaaaagttgtCAATATATGAAACAGACTTCCTCATTCTCTGATCTATGGATCTCCTCCGTGTCTCCCTCCTTTACTTCTAAAGGGAAATCCCTCTGTGTTGCGCTAATATTTCATCAGGGCATACGTTTATGCACTGCCCCACGCGCATGATGACAATCCAGACCTCAACGTAATGCCGGTAAGGATGAGATCCCTCGTCCTTTGCATCTCGTTTGCACTCCAGTGCTTCGTTCTCCAAAGCGCATCAGAGTATTCTTCAAAATCCGAGCTGGAGTACGAATTCGGCGACTATCGCGGCAAGTTCTGCATCGACGACcaaggttttgtttacagcatCGGAGAGGTCTATTACCCGAGCTCCACAGCGTGTCCCTGCACCTGCACAGAGGATGGACCCGTGTGTGTCCGACCCAAGTGCCCGCGTATACACCCGAGATGCACTCGCATCAAATACAGGTCCTGCTGCCCCGTGTGTGAAGCTGTCAGTAAAGTCTGCGTGTACGGCGGGAAAACTTACAGAATGCTGGAGGAATTTAGGCTGTCACCCTGTGAGCGCTGCCGGTGCGAAGTCAACAGAGAAGTTTACTGCACCATATCCGGCTGCCCTGCCTTACATTGTGTGAATCCTGTATACGAACCCAACCATTGCTGTCCCGTGTGTAAAAATGGGCCAAACTGCTTTGCTGGAAACCGCGTGATCTCGGCTGGAGAGCGCGTCGAGATTGACGAGCAGACGGTGTGTTTCTGCACCTACCGGGACGGAACGTGGCAGACGCACCCTCACGCTACCTGCGAGGAGCGCCAGCGAGCAGACAATGAAGCCACCGACTCCGACGGCACATCTAAACAGATGGAGGAGCaggagatggagaaagagaaagagagagtgttcTTTCCCAGGTTGGATGCCATCCCGTGAAGCGAAGTGTGCCTGGCAGCAGCTCTCCTGACAGGCAGGAGGGGATGCAGAGCACCGTGCAGGTGTCTGTGCCCAGGGTAAACACAACCTGCGCTGGGATAACTGCCAATGCTGACCTCTCTAGCCAACCTCACCACCCCCTCCATCCTGACCCAGATCGGCAACCCACTGACAAGCAACATGCACTAATAAAATGTTCCATTATTATACACGGCACACTTGTTGTTCAGAAATTAGGAGTCTGTAATGCTGataattcagttttgccatcacaggaataaatgacattttaaaatatgttcaaatagaaagtagttattttaaattgcaatgatatttcacaatatcgcTTTCTTTGTGATCAACCAAATGCAGGTTGAGACTcacttaaaacattttcaaatcttaCAGACGccacatttttgaatggtagcttaaatatgtgtatattactgtatatcACGTTGTCCACTTCTTACAAAGAtgcaatataaattaaatatggagCATTGTATTCCCCATTTTCCCAACTCATTTTAGATGCAAGTTGTGTTAATGGGCACATTGCATACTTTTAAagttaatgaaaatagtttGATGTTTAAACGATTTATTCCATGTCCCATATGCCACTTTGATTAACAACTTCAATGTTCGTTCCAAACtaatactgaaaatatcatactgtatatgtaacCAGTAAAATTATGTTCTCCTTTAAGAAGATTAACcttcttgtttaaaaaagaagtgGAGCATGCAAtaagaaacatattttcaaaGGGCTGGTCAAATGGAAACATAATTAGAGTATTAAAGTCATCTCAGGTTTCA

Function

symbol description
si:dkey-283b1.7 Predicted to be involved in negative regulation of BMP signaling pathway. Predicted to be located in extracellular region and synapse. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in extracellular space.

NR:

description
PREDICTED: von Willebrand factor C domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235147.1 False 1733 mRNA 0.45 3 12515150 12518063
XM_043235148.1 True 2702 mRNA 0.41 4 12515150 12521787

Neighbor

gene id symbol gene type direction distance location
rpl23 rpl23,RPL23,rl23 coding downstream 355 12512603 ~ 12514795 (-)
ccdc103 LOC107758482,LOC107583073,LOC107695153 coding downstream 2685 12510609 ~ 12512465 (-)
LOC122342135 LOC107695140,LOC107758481,LOC107583074 coding downstream 4643 12509191 ~ 12510507 (-)
abi3a LOC107758490,LOC107583075,LOC107695026 coding downstream 6358 12498774 ~ 12508792 (-)
si:dkey-283b1.6 NA coding downstream 17139 12493718 ~ 12498011 (-)
sgsm3 sgsm3,LOC107737740,LOC107695086,LOC107758493,LOC107689630 coding upstream 8322 12530109 ~ 12544481 (-)
LOC122329559 LOC107582973,LOC107723206,LOC107554143,LOC107695115,LOC107689629,LOC107737739,LOC796777,LOC108436680 coding upstream 49241 12571028 ~ 12661848 (-)
LOC122332086 gtf2f1,LOC107737737 coding upstream 452921 12974708 ~ 12980093 (-)
LOC122331923 NA coding upstream 459300 12981087 ~ 12987204 (-)
LOC122331939 NA coding upstream 465563 12987350 ~ 12992329 (-)
LOC122332655 NA non-coding downstream 219727 12294140 ~ 12295423 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding downstream 244214 12265845 ~ 12270936 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding downstream 284771 12226575 ~ 12230379 (-)
G19503 NA non-coding downstream 332666 12182258 ~ 12182484 (-)
G19463 NA non-coding downstream 417788 12092899 ~ 12097362 (-)
G19677 LOC107737766 non-coding upstream 342523 12864310 ~ 12886954 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding upstream 378994 12900781 ~ 12902910 (-)
LOC122332187 NA non-coding upstream 550773 13072560 ~ 13072828 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding upstream 558283 13080070 ~ 13080621 (-)
G19703 ighv6-1 non-coding upstream 568884 13090671 ~ 13091152 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 171278 12339187 ~ 12343872 (-)
LOC122341756 NA other downstream 594383 11909775 ~ 11920767 (-)
G19383 NA other downstream 634191 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 787149 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 800431 11694272 ~ 11714719 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 100996 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 160203 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 484209 13005996 ~ 13068190 (-)
G19700 NA other upstream 525254 13047041 ~ 13047494 (-)
gng13b NA other upstream 1264222 13786009 ~ 13792602 (-)

Expression


Co-expression Network