swsap1 (LOC107550247)


Basic Information

Item Value
gene id swsap1
gene name LOC107550247
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5280179 ~ 5282321 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235154.1
CGAAACAGTAGGCGGTGCGACGTCAAGTTCGCGGGAGAAGAAGCATGGTGCCTTTACGTTTTACAGAAGCTTCAGAAAAGTCGTACATGCGGCAATTGTGATGGCTGATATTTTAGGAGTCGTTTTCAGACGATTCGCGTCGGGAACTGTATCAGGGGATGTAATATCCCCCCCTCACGCGGAAGGAAACACTCTGGTTCTCGGGGATGTAAATATCAGCAGATCTGTGTTGTTTCTTGCAGCTGTAACAGCTGCCACGGATTTGGGGCTCAGAGTGCTGTTTTTCACACAGACTCCTTTTCAGTCTCTGCCGGTGTCTTTGAGAGCTTCAATACCTGGATTAAAACTAGAGAGTTTAAAGAGCGTCAAGTTCGTGTACGCGAAGACTTTGGAGGAGCTCGTCGAAGATACAGCGTCCCTTCATGAGCTGGCGTCTCCTCCCTCTCTGATTATCGTGGACGGTCTGGATCGGTACTTGCGCGGGCCTGGAGTTGGACCGCTCCGGGACGAGCTGAGCCCCGCGGCCCATGCAGCTGCGCTCCTGCACGACACCGCCGCTTTCCTCTCCCGGAAGCGAGCGGACGGCCAGGGCCCGTGCAGAGTCCTGCTCTCCTGTCAGTCTGAGCGCGAAGCCAGTCGGGATGATGAAGCGCCGGGGCCCGAGCTCCTCCTCCTCTCGGCGCTGGACCGTTACCTGCAGGTGAGGTGCACCCTGGAGGAAGTGAGGCGCGACGGGGAGGAGGGGCAGAACGAGTGGCAGGTGTATCTGTCGGTCCCGTGTCCTTCGCCGCTGCAGCAGTGGCGCATGGTGCTGCGGCCAGGAGCTGCTCTGGAGTTCAGGCCAGTCTTCGGCGAGGAACAGCAGATCCTGGACCAGCCGGAGAAGAGCGAACAGGACAGTGAGAGGTGCGGAGACAACTGATAAGAGATTATATTACTATACAATAATTTGATTTGTCAAGCCATGCATGCGCAGAAATGTTATTTGGGATTTTGACTAAGGAACACGAGCTTTTCTGGACTAAATACGCAAATAGTCAACCATACCATGAAACAAACCTCAGTATTTATTTGTGCGTctacttcactttttttatgtacagACAGTTCCTTTCGAgtacgttgttgttgttttcaacCTTTGTTGACatccaaataaattaaatacttgA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107550247

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235154.1 True 1172 mRNA 0.53 2 5280179 5282321

Neighbor

gene id symbol gene type direction distance location
gadd45gip1 LOC107553677,LOC107661658,LOC107735399,LOC107715629,LOC107550245 coding upstream 38853 5239573 ~ 5241326 (+)
nme4 nme4,LOC107715653,LOC107695718,LOC107718576,LOC107661657,LOC107553633 coding upstream 288785 4987440 ~ 4991394 (+)
xpo6 xpo6,LOC107715628,LOC107718574 coding upstream 296441 4963561 ~ 4983738 (+)
antkmt fam173a,LOC107553674 coding upstream 318199 4958012 ~ 4961980 (+)
si:dkey-282h22.5 NA coding upstream 322320 4952501 ~ 4957859 (+)
LOC122341561 LOC107711124,LOC107659564,LOC107550256,LOC107718588,LOC107656793,LOC107579440 coding downstream 127278 5409599 ~ 5413133 (+)
LOC122331179 LOC107550260,LOC107659569 coding downstream 268875 5551196 ~ 5556139 (+)
LOC122331145 NA coding downstream 284244 5566565 ~ 5574214 (+)
gcdhb gcdhb,gcdh,LOC107718595,LOC107653471,LOC107731476,LOC107563244,LOC102794743 coding downstream 292080 5574401 ~ 5580741 (+)
tufm tufm,LOC107718598,LOC107659578,LOC107731475,LOC101070424,LOC106931188 coding downstream 534722 5817043 ~ 5821892 (+)
G17056 NA non-coding upstream 22427 5254500 ~ 5257752 (+)
G17061 NA non-coding upstream 59807 5219650 ~ 5220372 (+)
LOC122341773 NA non-coding upstream 68486 5207244 ~ 5211693 (+)
G17059 NA non-coding upstream 71312 5208656 ~ 5208867 (+)
G17026 NA non-coding upstream 244800 4991996 ~ 5035379 (+)
G17112 NA non-coding downstream 123449 5405770 ~ 5406163 (+)
G17115 NA non-coding downstream 168218 5450539 ~ 5517864 (+)
G17300 NA non-coding downstream 311665 5593986 ~ 5594547 (+)
G17315 NA non-coding downstream 364924 5647245 ~ 5648079 (+)
G17322 NA non-coding downstream 408214 5690535 ~ 5695636 (+)
G16981 NA other upstream 373213 4905656 ~ 4906966 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other upstream 733612 4470732 ~ 4546567 (+)
G16979 NA other upstream 817905 4458698 ~ 4462274 (+)
G16955 crebbp,LOC108440697 other upstream 841978 4437288 ~ 4438201 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other upstream 874795 4357032 ~ 4405384 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other downstream 28172 5310493 ~ 5312371 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other downstream 133437 5415758 ~ 5480607 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 274687 5557008 ~ 5565974 (+)
G17302 NA other downstream 314778 5597099 ~ 5598232 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other downstream 675082 5957403 ~ 5962888 (+)

Expression


Co-expression Network