hbba1 (ba2,ba1)


Basic Information

Item Value
gene id hbba1
gene name ba2,ba1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9783631 ~ 9784425 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235165.1
GGTTTCTGAATTTCTACTAGTGTTTCCTACTGGACTTAAGCAAGTACCTAAGAACACCCTCAAAACGTAGACATGGTTGAGTGGACAGATGCTGAGCGAAGCGCCATCGCTACCCTGTGGGGAAAGCTCAATATCGATGAACTCGGACCTCAGGCCCTGGCCAGGTGTCTGATCGTGTATCCCTGGACTCAGAGATATTTCGCCACCTTCGGAAACCTGTCAAGCCCCGCTGCCATCATGGGCAACCCCAAGGTCGCAGCTCACGGGAGGACTGTGATGGGAGGCCTGGAGAGAGCCATCAAGAACATGGATAACATCAAGGCCACCTACTCAGCGCTGAGCGTGATGCACTCCGAGAGATTGCACGTGGATCCCGACAACTTCAGGCTTCTGGCTGACTGCATCACCGTGTGCGCCGCCATGAAGTTCGGCCCCGCTGGCTTCAACGCCGACATCCAGGAGGCCTGGCAGAAGTTTCTGTCTGTCGTCGTTTCCGCCCTGTGCAGACAGTACCACTAGATCCTCATCGCCGATGAACCCCAGCGGCGTTGCAGAAGACTGCGGGAGCTGTTCACAAAGATCTATTTCTTATAAAATAAgatcaataaaatattgttaaaagca

Function

NR:

description
hemoglobin subunit beta-2

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K13825 HBE; hemoglobin subunit epsilon

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235165.1 True 624 mRNA 0.53 3 9783631 9784425

Neighbor

gene id symbol gene type direction distance location
hbba2 zgc:92880,LOC107754031,LOC107711188,LOC107587925,LOC107596824,LOC107672461 coding downstream 6198 9776674 ~ 9777433 (-)
nprl3 LOC107711278,LOC107596811,LOC107754028,LOC107670498,LOC107672508 coding downstream 9356 9761330 ~ 9774275 (-)
rhbdf1a rhbdf1a,LOC107587928,LOC107711277,LOC107596807,LOC107672493,LOC107754036,LOC107670513 coding downstream 43474 9698064 ~ 9740157 (-)
ubald1b ubald1b,LOC107754052,LOC107672511,LOC107670507,LOC107596822,LOC107587929 coding downstream 104680 9675218 ~ 9678951 (-)
s1pr2 s1pr2,LOC107711272,LOC107587933,LOC107672500,LOC107596814,LOC107754042 coding downstream 153719 9607284 ~ 9629912 (-)
hbae1.1 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding upstream 7117 9791542 ~ 9792514 (-)
LOC122331237 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding upstream 10280 9794705 ~ 9795658 (-)
LOC122341747 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding upstream 13574 9797999 ~ 9798799 (-)
LOC122341755 hbae1,si:ch211-5k11.2,LOC107754049,LOC107674601,LOC107596827,LOC107754026 coding upstream 16856 9801281 ~ 9802091 (-)
hbae3 hbae3,LOC107674645,LOC107588003,LOC107703327 coding upstream 23627 9808052 ~ 9809328 (-)
G18623 NA non-coding downstream 30109 9753235 ~ 9753522 (-)
G18608 NA non-coding downstream 137065 9646313 ~ 9646566 (-)
G18602 NA non-coding downstream 192340 9589921 ~ 9591291 (-)
G18599 NA non-coding downstream 211826 9571600 ~ 9571805 (-)
LOC122342127 NA non-coding downstream 249844 9512446 ~ 9533787 (-)
G18628 hbaa1,si:ch211-5k11.8,LOC107682494,LOC107587926 non-coding upstream 824 9785249 ~ 9786124 (-)
G18634 LOC107596828,LOC107588005,LOC107596825,LOC107703325,LOC107587921,LOC108440249,LOC108440213 non-coding upstream 5191 9789616 ~ 9793185 (-)
G18638 LOC107703356,LOC107674672,LOC107754020,LOC107596819 non-coding upstream 117106 9901531 ~ 9908617 (-)
G18717 NA non-coding upstream 617408 10401833 ~ 10402211 (-)
G18745 NA non-coding upstream 789742 10574167 ~ 10579140 (-)
G18433 LOC107670519,LOC107563315 other downstream 320726 9426572 ~ 9462905 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other downstream 645542 9134043 ~ 9138089 (-)
zgc:113210 NA other downstream 776188 8992714 ~ 9007443 (-)
fmc1 NA other downstream 1384803 8309532 ~ 8398828 (-)
LOC122342198 NA other downstream 1564576 8218902 ~ 8219055 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 209408 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 609889 10394314 ~ 10396341 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 1227511 11011936 ~ 11064598 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other upstream 1627560 11411985 ~ 11429179 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 1909847 11694272 ~ 11714719 (-)

Expression


Co-expression Network