LOC122341659 (si:ch211-5k11.8,hbaa1,LOC107587926)


Basic Information

Item Value
gene id LOC122341659
gene name si:ch211-5k11.8,hbaa1,LOC107587926
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9785282 ~ 9786123 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235166.1
ACAGAATCCCATTTTCGTCAACATCTTTTTCTGAAGACAATCTAACTTGAGAAAAAGAAGACGCAGCAATGAGTCTCTCTGATAAGGACAAGGCTGCTGTGAAGGCCCTGTGGGCTAAGATCAGCTCCAAGGCCGATGAAATCGGCGCTGAAGCCCTCGGCAGgATGCTGACCGTCTACCCTCAGACCAAGACCTACTTCTCTCACTGGGCTGACCTGAGTCCTGGGTCCGCTCCCGTGAAGAAGCACGGCAAGGTTATCATGGGCGCAGTCGGCGAAGCCATTTCAAAAATAGACGACCTTGTGGGAGGCCTGGCCCCCCTGAGCGAACTTCACGCTTTCAAGCTGCGTGTGGACCCGGCCAACTTCAAGATCCTCTCACACAATGTCATCGTGGTCATCGGCATGCTCTTCCCCGGAGACTTCACCCCAGAGGTTCACGTGTCAGTCGACAAGTTTTTTCAGAACTTGGCCCTGGCTCTCGCCGAGAGGTACCGCTAAACGTCCGGCGGGCATCCATGCGCGACACTGTGCGGCAGCCCTGAACCAGCTCAAGCGTGATGTCTGAATAACATTTCTCAATAAAAAGGCACAGAATTAAACGA

Function

symbol description
hbaa1 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Acts upstream of or within response to hypoxia. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex. Is expressed in eye; hematopoietic system; presumptive blood; and vasculature. Human ortholog(s) of this gene implicated in Heinz body anemia; alpha thalassemia; familial erythrocytosis 7; and hemoglobin H disease. Orthologous to several human genes including HBZ (hemoglobin subunit zeta).
si:ch211-5k11.8 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Predicted to be involved in hydrogen peroxide catabolic process. Predicted to act upstream of or within oxygen transport. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex. Orthologous to human HBZ (hemoglobin subunit zeta).

NR:

description
PREDICTED: hemoglobin subunit alpha

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235166.1 True 604 mRNA 0.53 3 9785282 9786123

Neighbor

gene id symbol gene type direction distance location
hbaa2 si:ch211-5k11.6,hbz,LOC107587927,LOC107672462,LOC107670501 coding upstream 5992 9778492 ~ 9779290 (+)
mpg si:xx-by187g17.9,LOC107596818,LOC107754030,LOC107670500,LOC107672429,LOC107587979,LOC107711169 coding upstream 24098 9755181 ~ 9761184 (+)
mgrn1b mgrn1,mgrn1b,LOC107754037,LOC107672503,LOC107711275,LOC107670506 coding upstream 92645 9679898 ~ 9692637 (+)
LOC122341977 NA coding upstream 112478 9667567 ~ 9672804 (+)
icam3 NA coding upstream 118677 9656552 ~ 9666605 (+)
hbbe1.1 LOC107587921,LOC107596825,LOC107674643,LOC107703325 coding downstream 3232 9789355 ~ 9790164 (+)
hbbe1.2 LOC107703325,LOC107587921,LOC107596828,LOC107596825 coding downstream 6533 9792656 ~ 9793389 (+)
LOC122331228 LOC107596828,LOC107596825,LOC107703325,LOC107587921,LOC107674643 coding downstream 9666 9795789 ~ 9796532 (+)
LOC122332778 NA coding downstream 17450 9803573 ~ 9804386 (+)
angptl8 NA coding downstream 74340 9860463 ~ 9863218 (+)
G18502 ba1,ba2 non-coding upstream 824 9775320 ~ 9784458 (+)
G18470 dnmt1,LOC107670489 non-coding upstream 182218 9602642 ~ 9603064 (+)
G18458 LOC107672431,LOC107711167,LOC107587937 non-coding upstream 209380 9574881 ~ 9575902 (+)
G18457 NA non-coding upstream 210793 9574289 ~ 9574489 (+)
G18456 LOC107672431,LOC107587937 non-coding upstream 211020 9573184 ~ 9574262 (+)
G18507 NA non-coding downstream 68480 9854603 ~ 9859173 (+)
G18517 NA non-coding downstream 79663 9865786 ~ 9943153 (+)
G18549 prkcsh,LOC107703311,LOC107725022,LOC107754018,LOC107587972 non-coding downstream 124834 9910957 ~ 9911612 (+)
G18671 NA non-coding downstream 487851 10273974 ~ 10302050 (+)
G18744 NA non-coding downstream 785696 10571819 ~ 10579144 (+)
G18491 NA other upstream 35402 9739796 ~ 9749880 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other upstream 87367 9692949 ~ 9697915 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other upstream 599622 9184399 ~ 9185660 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other upstream 601992 9138467 ~ 9183290 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other upstream 773104 9010050 ~ 9012178 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other downstream 12692 9798815 ~ 9799796 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other downstream 239695 10025818 ~ 10103461 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other downstream 905767 10691890 ~ 10698540 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other downstream 966636 10752759 ~ 10842507 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 1547618 11333741 ~ 11335825 (+)

Expression


Co-expression Network