tbc1d16 (tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324)


Basic Information

Item Value
gene id tbc1d16
gene name tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25287754 ~ 25308434 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235176.1
GAATGTCAGTGGGCGGGGCGTCGACTCCGGCGTCAGCGGCGGCGTGCGGAGTGAAGTGTCACCGATAAACACGAGCGTCATTCCCCGTAGCCTGGCTCGGACGCGCCGCTTCTGATATGGACGCGTAGCGACGGCTGTAATCGTTTCTGTTGCTGAAGAGGATGGGAGAAGCGAGCGGTCATTGGAGGAGATGTCATTCGGTCGACTCCTGCGACGCGCATCCTCCAAAGCCTCTGACCTTTTGACGTTTAACGTGGGCACGGGAGGATCACGGACCGTGCTGGATGGAGAGATCATCTTCTCCAAGAACAATGTGTGCGTTCACCCGGCCGAGCCTCTGCCCGGCCTGCCCGAGCATCacccagGTTACCTCTGCGTGCACCTGGAGAAAGACGAGACCCTCGGCTCCACCCTCATCCTCACCTGGGTGCCCAACTCTCGCATCCAGCGGCAGGACGAAGAGGCCCTTCGTTACATCACGCCCGAAAGCTCTCCAGTCCGCCGCAACCCCCGCCGCCGAGCCCACCGGAGCCACTCTCGCCCGCCGCCCGCCcccgaggaagaggaggacgaAGAGGCGCCGGAGCCAGCTCTGCAGAACCAGCAGCTTTTGGAAGAGGGCGACGAGGGCTCGTGCGAGCTCTCTGCGGACGAGGTGAGTCGAGACAGCACCCTCGGCTCGGACTCGGACACCTTCTCCTCGCCCTTCTGCCTGTCGCCCGTCAGCGAGGCTCTGGGCGAGAGCAGCAGCTCCGTCTTCCTGGATAATGAGAGCAGGGAGTGCGATGAACCCATGGCTCACTCTGCAAGCTCCGCCTCCAGCCTGGACAGCCACGCCCCCTCAgaaatcagccaatcacagggAGTTCGGTGGGAGGAGCAGCAGAAAGTCATGGCCTTAGAGCACCTGTGCGGGGTGTTCAGAGTCGACCTGGGTCACATGAGGTCACTGCGCCTCTTCTTCAGCGACGAGGCCTGCACCTGTGGACAGCTGGTCATCGCCAGCAGAGAGAGCCAGTACAAGATCCTTCACTTCCACCACGCCGGGCTGGATAAGCTGGCCGAGGTCTTTCAGCAGTGGAAGTGCTGCAGAGAGACGCAGCTCAAAGACCAGGTGTCGGATGAGAAGTCATGTATGCAGTTTTCTATCCGCAGACCCACGTTACCGTCCGCTGAGATGCACCCAGAGGAGCGTCTGTATCGGCGGCTGGACGTCAGCTCTTGGCTCCGGCATCTCAACAACAACGGCCAGGTGGTGGAGGAGTACAAGCTCAGGAAGGCCATCTTCTTCGGGGGCGTCGACCCGTCCATCCGTGGTGAAGTGTGGCCCTTCCTGCTGCACTACTACAGCTACGACTCCGCGTCTGAGGAGCGGGAAGCCTGGAGGCTGCAGAAGCGCGCGGAGTACCAGGACGTCCAGCAGAGGAGGCTGTCCATGAGTCCAGAGGAGCACAGTGAGTTCTGGAGGAAGGTCCAGTTCACTGTTGATAAAGATGTGGTCAGAACCGATCGGAGCAACATGTTCTTCAGAGGAGAAAACAACCCCAATGTAGAAATCATGAGGCGTATCCTTCTGAACTACGCCGTGTTTAACCCAGACATGGGCTACTGTCAGGGCATGTCAGATCTGGTGGCTCCTCTTCTGACCGAGATCCAGGACGAGAGCGACACGTTCTGGTGCTTCGTGGGGCTCATGGAGAACACCATCTTCATCAGCTCTCCTCGAGATGAGGACATGGAGAGGCAGCTGatgTACCTGCGTGAGCTCCTGCGGCTGATGCTGCCTCGCTTCCACCAGCACCTGACCCGGCTGGGAGAGGACGGCCTTCAGCTGCTGTTCTGCCACCGCTGGGTTCTTCTGTGCTTCAAGCGCGAGTTCCCCGACGCTGAGGCCCTGCGCATGTGGGAGGCCTGCTGGGCGCACTATCAGACGGACTACTTCCACCTGTTCCTGTGCGTCGCCATCATCGTGCTGTACGGCGATGATGTCACAGAGCAGCAGCTCGCCACAGATCAAATGCTGCTGCACTTCAGTAACCTCTCCATGCACATGAATGGAGAGCTGGTGCTGAggaagGCTCGTAGCCTGCTCTATCAGttccgccttcttcccagaattccctgcagcTTGCACGACCTGTGCAAACTGTGCGGTCCAGGAATGTGGGACAGCCGTTACATCCCGGCCATAGAATGTTCCGGAGAGCATCCCGACTCTCAGAGCTGCCCCTATGGAGGCACGGCTACCCCCGAGAGCCCGCCCCTACCCAGCCCCAACCAGCCCAACGAGGGCAAGAGGGGCTCCAAGACACGGGACATTTTCACTTTCCGCAAGCACTCCTGACTCGAGCACGTCTCAGGAACGCCCCTTACCCATAAGGCTTAGCCTCTGAGCCGCATTTCAGGTCTCCGCCGATGCCGACAGCCTCTTCTGGAGGTTGGGGAACCTCATCAATAATTCACAAGTACAATTATCACAAACAATCAAGACTAAGTCTTCATCCGTCTTTCATGAAGTCACATCTTGCGAACTGACAtctcagaatatttttttttgtatcgacaatgtatgcatgtgttagcgtttgggtttgggtttgggtttgtTACCACAGTCGAAGggtgtcgttttttttttctgattagtttgtgttttttggcaTATTTTCGTTTCTTTCATGTTCAGTTTCTCAACTGTGAAATCAAACAATCAGCCAAAATAAAGTGGGACACCGTTATCACGGGCTCTCTGATATCAAAACGTTGCTTTACGATCATCTATGCCTTTCATATCACAGTAAATATAACGATATAGAGAAGAGAGACTCTTATTGAGTCCGTGAAGATCCTCAAgtcaatgtgaaattaaaattgatGCTATTATCA
>XM_043235177.1
TGTCAGTGGGCGGGGCGTCGACTCCGGCGTCAGCGGCGGCGTGCGGAGTGAAGTGTCACCGATAAACACGAGCGTCATTCCCCGTAGCCTGGCTCGGACGCGCCGCTTCTGATATGGACGCGTAGCGACGGCTGTAATCGTTTCTGTTGCTGAAGTGAGAAGAAGAGTTTAGCGGTTGTCTTGTCTCCGTCTCAGAGGATGGGAGAAGCGAGCGGTCATTGGAGGAGATGTCATTCGGTCGACTCCTGCGACGCGCATCCTCCAAAGCCTCTGACCTTTTGACGTTTAACGTGGGCACGGGAGGATCACGGACCGTGCTGGATGGAGAGATCATCTTCTCCAAGAACAATGTGTGCGTTCACCCGGCCGAGCCTCTGCCCGGCCTGCCCGAGCATCacccagGTTACCTCTGCGTGCACCTGGAGAAAGACGAGACCCTCGGCTCCACCCTCATCCTCACCTGGGTGCCCAACTCTCGCATCCAGCGGCAGGACGAAGAGGCCCTTCGTTACATCACGCCCGAAAGCTCTCCAGTCCGCCGCAACCCCCGCCGCCGAGCCCACCGGAGCCACTCTCGCCCGCCGCCCGCCcccgaggaagaggaggacgaAGAGGCGCCGGAGCCAGCTCTGCAGAACCAGCAGCTTTTGGAAGAGGGCGACGAGGGCTCGTGCGAGCTCTCTGCGGACGAGGTGAGTCGAGACAGCACCCTCGGCTCGGACTCGGACACCTTCTCCTCGCCCTTCTGCCTGTCGCCCGTCAGCGAGGCTCTGGGCGAGAGCAGCAGCTCCGTCTTCCTGGATAATGAGAGCAGGGAGTGCGATGAACCCATGGCTCACTCTGCAAGCTCCGCCTCCAGCCTGGACAGCCACGCCCCCTCAgaaatcagccaatcacagggAGTTCGGTGGGAGGAGCAGCAGAAAGTCATGGCCTTAGAGCACCTGTGCGGGGTGTTCAGAGTCGACCTGGGTCACATGAGGTCACTGCGCCTCTTCTTCAGCGACGAGGCCTGCACCTGTGGACAGCTGGTCATCGCCAGCAGAGAGAGCCAGTACAAGATCCTTCACTTCCACCACGCCGGGCTGGATAAGCTGGCCGAGGTCTTTCAGCAGTGGAAGTGCTGCAGAGAGACGCAGCTCAAAGACCAGGTGTCGGATGAGAAGTCATGTATGCAGTTTTCTATCCGCAGACCCACGTTACCGTCCGCTGAGATGCACCCAGAGGAGCGTCTGTATCGGCGGCTGGACGTCAGCTCTTGGCTCCGGCATCTCAACAACAACGGCCAGGTGGTGGAGGAGTACAAGCTCAGGAAGGCCATCTTCTTCGGGGGCGTCGACCCGTCCATCCGTGGTGAAGTGTGGCCCTTCCTGCTGCACTACTACAGCTACGACTCCGCGTCTGAGGAGCGGGAAGCCTGGAGGCTGCAGAAGCGCGCGGAGTACCAGGACGTCCAGCAGAGGAGGCTGTCCATGAGTCCAGAGGAGCACAGTGAGTTCTGGAGGAAGGTCCAGTTCACTGTTGATAAAGATGTGGTCAGAACCGATCGGAGCAACATGTTCTTCAGAGGAGAAAACAACCCCAATGTAGAAATCATGAGGCGTATCCTTCTGAACTACGCCGTGTTTAACCCAGACATGGGCTACTGTCAGGGCATGTCAGATCTGGTGGCTCCTCTTCTGACCGAGATCCAGGACGAGAGCGACACGTTCTGGTGCTTCGTGGGGCTCATGGAGAACACCATCTTCATCAGCTCTCCTCGAGATGAGGACATGGAGAGGCAGCTGatgTACCTGCGTGAGCTCCTGCGGCTGATGCTGCCTCGCTTCCACCAGCACCTGACCCGGCTGGGAGAGGACGGCCTTCAGCTGCTGTTCTGCCACCGCTGGGTTCTTCTGTGCTTCAAGCGCGAGTTCCCCGACGCTGAGGCCCTGCGCATGTGGGAGGCCTGCTGGGCGCACTATCAGACGGACTACTTCCACCTGTTCCTGTGCGTCGCCATCATCGTGCTGTACGGCGATGATGTCACAGAGCAGCAGCTCGCCACAGATCAAATGCTGCTGCACTTCAGTAACCTCTCCATGCACATGAATGGAGAGCTGGTGCTGAggaagGCTCGTAGCCTGCTCTATCAGttccgccttcttcccagaattccctgcagcTTGCACGACCTGTGCAAACTGTGCGGTCCAGGAATGTGGGACAGCCGTTACATCCCGGCCATAGAATGTTCCGGAGAGCATCCCGACTCTCAGAGCTGCCCCTATGGAGGCACGGCTACCCCCGAGAGCCCGCCCCTACCCAGCCCCAACCAGCCCAACGAGGGCAAGAGGGGCTCCAAGACACGGGACATTTTCACTTTCCGCAAGCACTCCTGACTCGAGCACGTCTCAGGAACGCCCCTTACCCATAAGGCTTAGCCTCTGAGCCGCATTTCAGGTCTCCGCCGATGCCGACAGCCTCTTCTGGAGGTTGGGGAACCTCATCAATAATTCACAAGTACAATTATCACAAACAATCAAGACTAAGTCTTCATCCGTCTTTCATGAAGTCACATCTTGCGAACTGACAtctcagaatatttttttttgtatcgacaatgtatgcatgtgttagcgtttgggtttgggtttgggtttgtTACCACAGTCGAAGggtgtcgttttttttttctgattagtttgtgttttttggcaTATTTTCGTTTCTTTCATGTTCAGTTTCTCAACTGTGAAATCAAACAATCAGCCAAAATAAAGTGGGACACCGTTATCACGGGCTCTCTGATATCAAAACGTTGCTTTACGATCATCTATGCCTTTCATATCACAGTAAATATAACGATATAGAGAAGAGAGACTCTTATTGAGTCCGTGAAGATCCTCAAgtcaatgtgaaattaaaattgatGCTATTATCA
>XM_043235178.1
GAATGTCAGTGGGCGGGGCGTCGACTCCGGCGTCAGCGGCGGCGTGCGGAGTGAAGTGTCACCGATAAACACGAGCGTCATTCCCCGTAGCCTGGCTCGGACGCGCCGCTTCTGATATGGACGCGTAGCGACGGCTGTAATCGTTTCTGTTGCTGAAGAGGATGGGAGAAGCGAGCGGTCATTGGAGGAGATGTCATTCGGTCGACTCCTGCGACGCGCATCCTCCAAAGCCTCTGACCTTTTGACGTTTAACGTGGGCACGGGAGGATCACGGACCGTGCTGGATGGAGAGATCATCTTCTCCAAGAACAATGTGTGCGTTCACCCGGCCGAGCCTCTGCCCGGCCTGCCCGAGCATCacccagGTTACCTCTGCGTGCACCTGGAGAAAGACGAGACCCTCGGCTCCACCCTCATCCTCACCTGGGTGCCCAACTCTCGCATCCAGCGGCAGGACGAAGAGGCCCTTCGTTACATCACGCCCGAAAGCTCTCCAGTCCGCCGCAACCCCCGCCGCCGAGCCCACCGGAGCCACTCTCGCCCGCCGCCCGCCcccgaggaagaggaggacgaAGAGGCGCCGGAGCCAGCTCTGCAGAACCAGCAGCTTTTGGAAGAGGGCGACGAGGGCTCGTGCGAGCTCTCTGCGGACGAGGTGAGTCGAGACAGCACCCTCGGCTCGGACTCGGACACCTTCTCCTCGCCCTTCTGCCTGTCGCCCGTCAGCGAGGCTCTGGGCGAGAGCAGCAGCTCCGTCTTCCTGGATAATGAGAGCAGGGAGTGCGATGAACCCATGGCTCACTCTGCAAGCTCCGCCTCCAGCCTGGACAGCCACGCCCCCTCAgaaatcagccaatcacagggAGTTCGGTGGGAGGAGCAGCAGAAAGTCATGGCCTTAGAGCACCTGTGCGGGGTGTTCAGAGTCGACCTGGGTCACATGAGGTCACTGCGCCTCTTCTTCAGCGACGAGGCCTGCACCTGTGGACAGCTGGTCATCGCCAGCAGAGAGAGCCAGTACAAGATCCTTCACTTCCACCACGCCGGGCTGGATAAGCTGGCCGAGGTCTTTCAGCAGTGGAAGTGCTGCAGAGAGACGCAGCTCAAAGACCAGGTGTCGGATGAGAAGTCATGTATGCAGTTTTCTATCCGCAGACCCACGTTACCGTCCGCTGAGATGCACCCAGAGGAGCGTCTGTATCGGCGGCTGGACGTCAGCTCTTGGCTCCGGCATCTCAACAACAACGGCCAGGTGGTGGAGGAGTACAAGCTCAGGAAGGCCATCTTCTTCGGGGGCGTCGACCCGTCCATCCGTGGTGAAGTGTGGCCCTTCCTGCTGCACTACTACAGCTACGACTCCGCGTCTGAGGAGCGGGAAGCCTGGAGGCTGCAGAAGCGCGCGGAGTACCAGGACGTCCAGCAGAGGAGGCTGTCCATGAGTCCAGAGGAGCACAGTGAGTTCTGGAGGAAGGTCCAGTTCACTGTTGATAAAGATGTGGTCAGAACCGATCGGAGCAACATGTTCTTCAGAGGAGAAAACAACCCCAATGTAGAAATCATGAGGCGTATCCTTCTGAACTACGCCGTGTTTAACCCAGACATGGGCTACTGTCAGGGCATGTCAGATCTGGTGGCTCCTCTTCTGACCGAGATCCAGGACGAGAGCGACACGTTCTGGTGCTTCGTGGGGCTCATGGAGAACACCATCTTCATCAGCTCTCCTCGAGATGAGGACATGGAGAGGCAGCTGatgTACCTGCGTGAGCTCCTGCGGCTGATGCTGCCTCGCTTCCACCAGCACCTGACCCGGCTGGGAGAGGACGGCCTTCAGCTGCTGTTCTGCCACCGCTGGGTTCTTCTGTGCTTCAAGCGCGAGTTCCCCGACGCTGAGGCCCTGCGCATGTGGGAGGCCTGCTGGGCGCACTATCAGGCTCCTTCATAGGAAACGTCCGGTGAGATTTTGGGTGAAAGTTCCAACAGATGCGCGATGTAGAAATCTCAGAAGCCTCGAAAACCGGAAAGAGATTGTTCCTTAAATCCCCCTTTAAGCTAAACGAATGGGTGTCTGTATCGCTTTAAGGATCTGCAGAGTGTCTAATGAAGATGAGATGCTAATTATCAGGTTTCCGCGGAATCCATTTGCATACATTGGCATGGTAATGACGAGGTGATTTTGGGGAGCAAAGCGGTTTGTCTTCTCGTTGCCCCCTCATCTGCATATCACCGTTTACTGCTTTTTAATTGGCTCTGTATGCATTTGGCCTTCACGATTGGTCTGGGATGTAGAATCGGCGGTTTTATTGGCTcggtgtgtttctgtgtgtgtgtcgtgtgacAGACGGACTACTTCCACCTGTTCCTGTGCGTCGCCATCATCGTGCTGTACGGCGATGATGTCACAGAGCAGCAGCTCGCCACAGATCAAATGCTGCTGCACTTCAGTAACCTCTCCATGCACATGAATGGAGAGCTGGTGCTG

Function

symbol description
tbc1d16 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to be active in early endosome. Orthologous to human TBC1D16 (TBC1 domain family member 16).

NR:

description
TBC1 domain family member 16-like

GO: NA

KEGG:

id description
K24797 TBC1D16; TBC1 domain family member 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235176.1 False 2886 mRNA 0.56 12 25287754 25308434
XM_043235177.1 True 2923 mRNA 0.56 12 25287757 25308434
XM_043235178.1 False 2479 mRNA 0.58 11 25287754 25306486

Neighbor

gene id symbol gene type direction distance location
gaa gaa,LOC107559225 coding upstream 829 25277792 ~ 25286925 (+)
grin2ca grin2c,LOC107658706,LOC107758122,LOC107559244,LOC100329743,LOC107728554 coding upstream 124893 25106181 ~ 25162861 (+)
LOC122342014 smarca4a,smarca4,LOC107658703,LOC107758124 coding upstream 278188 24994255 ~ 25009566 (+)
LOC122341374 NA coding upstream 432517 24852381 ~ 24855237 (+)
LOC122342024 chchd4a,chchd4,LOC107574929,LOC107718204,LOC107715767,LOC107551797 coding upstream 453798 24831425 ~ 24833956 (+)
cbx4 cbx4,LOC107758118,LOC107559247,LOC107690020,LOC107670662,LOC107728779,LOC107562304 coding downstream 19286 25327720 ~ 25333865 (+)
cbx8a LOC107758117,LOC107578989,LOC107728583,LOC107689994,LOC107559248,LOC107670683 coding downstream 27751 25336185 ~ 25339891 (+)
narfl narfl,LOC107583598 coding downstream 115509 25423943 ~ 25430065 (+)
fahd1 fahd1,LOC107586194,LOC107555652,LOC107586183,LOC107690023 coding downstream 127729 25436163 ~ 25437150 (+)
ndufb10 LOC107555654,LOC107583619,LOC107758101 coding downstream 134176 25442610 ~ 25444546 (+)
G23031 NA non-coding upstream 20597 24957311 ~ 25267157 (+)
G23027 NA non-coding upstream 197320 24730359 ~ 25090434 (+)
G23044 NA non-coding upstream 199784 25079692 ~ 25087970 (+)
G23014 ldlra,ldlr,LOC107758126,LOC107658701 non-coding upstream 614042 24615167 ~ 24673712 (+)
G23013 LOC107658701,LOC107758126 non-coding upstream 637050 24640580 ~ 24650704 (+)
G23077 NA non-coding downstream 70794 25379228 ~ 25382913 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding downstream 84084 25392518 ~ 25394254 (+)
G23095 NA non-coding downstream 110236 25418670 ~ 25419775 (+)
G23096 NA non-coding downstream 111838 25420272 ~ 25421130 (+)
G23069 NA non-coding downstream 122040 25430474 ~ 25434548 (+)
LOC122342019 LOC107758123 other upstream 294536 24983281 ~ 24993218 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other upstream 476177 24721526 ~ 24811577 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 756985 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 838465 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 848291 24434055 ~ 24439463 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 38350 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 103484 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 215875 25524309 ~ 25569403 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other downstream 265323 25573757 ~ 25577043 (+)
LOC122336634 NA other downstream 304725 25613159 ~ 25615905 (+)

Expression


Co-expression Network