LOC122341669 (LOC107745245,LOC107575245,LOC107755608,LOC107672924)


Basic Information

Item Value
gene id LOC122341669
gene name LOC107745245,LOC107575245,LOC107755608,LOC107672924
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 2267588 ~ 2270464 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235186.1
TCAGAGCAGAGCTCACCGTTAGTATTTATGGCTCTTCCATATGAGGTAATAACAGGCCATTTCATTCTAGAGACGAAACCTTGGGTTGTAAAGGGATGTGAAATCGTTTCTGGAGATTTTTTGCCCTTCCCTAAGCCGCGTACCTTCTATGTAGATATCAGAGAACAATTTAGAATACTGCATCAATGCTTTCTATGGCACCTTTAAATTTAACGTGAGTGGCTTTTGACAAACGGTGCAATTGATGTAGAGAGGAGTGACGTGTGATAGAGACAAATGAGATCTGATTGAAGAGActgacttctctctctctctatctctttttctctctctacttCACAAACAGTCATTCAGAAAGTGAAACGTTTTATTCAAGAAGTGAGTGTTTTGCTGAAGCTCAAGAATGGATTCGCAAGCCGaatatgattataattttactAGTTTAGTTATTTTCCCATCTTGTGTTTTCCCGTTCATAGACTACTTGCCTGTGTATTAACGCTTTGCCTACAGTTTTGGACtctgtttaaagtttaaagattATCCCTCTTGTTTTGCTCGCTggattttaattttgttcatttctagGAAGAGCTCAATACAGCTCTGAAGCCCTTGCAAGAAATTGGAAGAAATGGTTAAACAAATCATGGTGAGGAAATGTAATCGACCTAAGTCATGTTTTTTGCTGttgattattattcattcacATGACTGAAGTGAATGTGGTTTGATTTCGGTCTcaagctgaacacacagcatcAGATTAAACAGCAGTTTGAGAAGCTTCATCAGTTTCTCAGAGATGAAGAAGAAGCTACGATCACTGCActgagggaggaagaggagcagaagaagaagatgatgaaggaGAAGCTGGAGGAGATCAACAGACACATCTCAGCTCTTTCAGACACAATTAAAGACACGGAGGAGATGATGAAAGACAATGACGTCTGCTTTCTGAAGaagTTTCCGGTCTCAGTGGAAAGAGTCCAGATCTCATCACAGCTGGATCCAAAGACACCTTCTGGAGCTTTGATTCATGTGCCACGATACTTGGGCAACCTGTCCTTCAGAGTCTGGAAGAAGATGCAGGACATCGTCCAGAACAGTGAGTCTGGAAAAGATCTGTGCTCTTTACACCTTTCCTACACCAGACGCAAGCGGTGCCACAAAATACAATACGACCTACTCTGCTGTCTATACTGGATCTGGTGAAACAAATTCCAGAAAGAAAACTGCTGATGTATTCTATTTATGACACAGTGACACaagtttcaaatgattttcaatGCTTGCTTTGTCACATACAGGGTTAACAGGCTTTAGCTGTTGCGGTCGTCTCCGGTGTAGACATGGTGTTACACATACACTGGAAATGTTGCACAGCTGGACAGGTTTAAAGATTCTTATAGGTTTAATCAATAGGTTGAGtgtcataattcataataatctGTGTTTGGTTTACTCGTGGTCATTATATTCACATcagtttaaatgcagctgttaATTGTGCCTTAACAGCTCCTCTGATTCTGGACCCAAACACTGCAAATCAGTGGCTCGTCCGGTCCGATGATCTGACCAGCGTGAGATACGGGAATAAACAACTGCTTTCTGATAACCCAGAGAGATTTGACCATTATTCTTGTGTTCTGAGTTCAGAGGGTTTTAACTCACTTCTGGGATGTGGAGGTTAAAGAGAGTCGATGCTGGAGTCTTGGAGTAACTATGGCATCAAACTAGAGGAAGGGATGTGATTATTTTTGACCGTGATGTCTGGAGTGTGGAGCATGGTTCTTCTGTAAGGTCTGGTGTTCATCTCGATAAGAACCTTAAGCGTCTGAGAGTGTGTCTGGACTATGAAGGAGGAATGGTGTCATTCTCTGATCCTGTAACtaacacacatctacacacattcacaaccaCAAGACACTTTATTCTCATTGGTTAGATTTTGTCACGACATGCGATAGGTAGGCTATGTTGTACTACAGGGCCATTGAAttcttgaatctgattggcggGCAAGCGTTCTAAggtgtgcaattatttttaggGAATCGTTTTCGTGAAAATTGGAGACATCCTATAGgcttaatggtttttatactgtacaaactgtatgtgctattgccctaaacctaccctaaccctaacctagccATCAAAGGAGACTTGTCTGAAATAGGTGAGGTGAGCCAATCAAAGACTAAGGTAAACAATAAATCAATCTCTTCTGTTTCTAATagcattatattttgtattgtttgctgTGTGATCAGCGTTTGCCTAAGGAGTAGATATGCTAGGGAAGTGacacataacattttaataatgttttgttaaaatgaacGAAATGACTAGAAAAAAACGAAGTGATCTAAACTTCCCATAACTAGAAGAAATCATACAGACTACGTTATTCCATCCTCACCGGGTTGGCCCTGTCCATGCCTTCATCTTCGGCAGTACTAGCTGGATTCTGACGCCTACAGATTCAAGCCACGGACAGATGCCTACGCCAAAGACTGTTtatacacatattgatctgtaaaataaatgctttgagTCTAAATCATGTCTTCATCTCATGAGTCTTTCTGGTAGAACTAATGGGAACAGGAACAGAACCATGGGCAAACAGGAAACCAACTAGTTTGTCAAAATGTTCTAATTCAGCATGACATGGGAATCCAATCTaacttaacatttaatttattgatat

Function

NR:

description
PREDICTED: tripartite motif-containing protein 35-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235186.1 True 2731 mRNA 0.40 3 2267588 2270464

Neighbor

gene id symbol gene type direction distance location
LOC122341668 LOC107755616,LOC107672923 coding upstream 80 2261610 ~ 2267508 (+)
si:ch211-106h11.3 LOC107691099,LOC107708266,LOC107755605,LOC107563746,LOC107672933,LOC107574113 coding upstream 126767 2131218 ~ 2140821 (+)
rangap1a rangap1,rangap1a,LOC107745514,LOC107722837 coding upstream 257157 2002679 ~ 2010431 (+)
LOC122333258 LOC107575253,LOC107595184,LOC107748256,LOC107740842,LOC107718680 coding upstream 325795 1925747 ~ 1941793 (+)
LOC122330213 plbd1,LOC107563730,LOC107572281,LOC107672894 coding upstream 396978 1867624 ~ 1870610 (+)
LOC122333376 NA coding downstream 22839 2293303 ~ 2296045 (+)
LOC122341568 LOC107672927,LOC107755614,LOC107742419,LOC107712223 coding downstream 53236 2323700 ~ 2340093 (+)
LOC122341598 NA coding downstream 71067 2341531 ~ 2349689 (+)
LOC122341572 LOC107751626,LOC107565147,LOC107696345 coding downstream 79311 2349775 ~ 2691512 (+)
LOC122341566 LOC107741349,LOC107677340,LOC107696333,LOC107575050,LOC107567211 coding downstream 87222 2357686 ~ 2370636 (+)
LOC122341670 NA non-coding upstream 12933 2253829 ~ 2254655 (+)
G16239 NA non-coding upstream 22656 2243357 ~ 2244932 (+)
G16246 NA non-coding upstream 24453 2192086 ~ 2243135 (+)
G16218 ddx39ab,LOC107563749,LOC107755611,LOC107672936,LOC107708265,LOC107691101,LOC107563747 non-coding upstream 117103 2143869 ~ 2150485 (+)
G16241 NA non-coding upstream 123782 2142227 ~ 2143806 (+)
G16310 NA non-coding downstream 26403 2296867 ~ 2356071 (+)
G16227 NA non-coding downstream 43836 2314300 ~ 2374078 (+)
G16327 LOC107741352,LOC107677336,LOC107567222,LOC107568146,LOC107696350 non-coding downstream 155944 2426408 ~ 2434512 (+)
G16337 sphk1,LOC107741344,LOC107677335,LOC107751628,LOC107696311,LOC107571948 non-coding downstream 246048 2516512 ~ 2546903 (+)
G16344 NA non-coding downstream 294024 2564488 ~ 2565843 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other upstream 101895 2160346 ~ 2165693 (+)
G16223 txn2,LOC107745512 other upstream 153249 2112037 ~ 2114339 (+)
trnar-ccu_2 NA other upstream 401803 1865713 ~ 1865785 (+)
G16002 pick1,LOC107734822,LOC107734770 other upstream 402359 1619312 ~ 1865229 (+)
G16347 NA other downstream 297620 2568084 ~ 2568999 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other downstream 370682 2641146 ~ 2646756 (+)
G16530 LOC107601546 other downstream 1012526 3282990 ~ 3283656 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other downstream 1050356 3320820 ~ 3323054 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 1239612 3510076 ~ 3526914 (+)

Expression


Co-expression Network