s1pr5a (s1pr5a,LOC107758128,LOC107577264,LOC107658699,LOC107728470)


Basic Information

Item Value
gene id s1pr5a
gene name s1pr5a,LOC107758128,LOC107577264,LOC107658699,LOC107728470
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24614599 ~ 24618241 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235192.1
AAGACGAGAAAAGGCGAGCGCCAAGGCCAGCCCACTTCAGGACGAGGCTCGATCCCGGGTTCGGCTGGCGGCCGGAGCGCGCGTCAGTTGTGCGCGGGACACGGCCAGAGGTAGTGCGGCGGAGGAGGGTGTTCGTTTCGTCGTCCTTAACTTCATCTttcCCTCTGGTGGCTTTTGAAGATATAACAAAGCTGAGCACCAAGAAAGATAGAAGTGAAAACATCAACTCAAACGAGCCTACGAGGATTTATTGCTACCGTGTTAAACCCTCCTGAGAGTTGCTTTAAGTGCTTTGCTGGAATATGGCAATAAGAGGGACTACAGAGATCCTTAAAACCCGTCTTTAAGGACAGCAGAAGAAACAGGAAGAATGGAAGCCTCATACGCCGCTAGCGCCGCCGTTGCTCCGACTCCTCCACCAATCACCTCGTCCCCAGGTTACCTGCTCAGGATGTTTCGGGAGTATCAAAGCAACGCCGTCATCATGGCCCATTACAACTTCACCGGAAAGCTGAAAGAGAACAAATACCGAGACGGACTGAAACCCGAGGCCATCGTGTTTCTCATCATCTGTCTTCTCATTGTGGTGGAAAATGCCATCGTTTTGGTGGCAATATGGAAGAACAAAAAATTCCACATGCCCATGTACTACTTGCTGGGCAGCTTGACGCTCTCAGATTTGCTCGCAGGCTTCACCTACATGGTGAACATCGTGACTTCTGGCGCAAACACTCTCAAAATGACTCCAGTGCTGTGGTTTCTTCGAGAAGGCGGCGTGTTTATCACACTTTCTGCGTCTATCATCAGTCTCCTCGCCATCGCTATCGAGCGACACGTCACGATGGTCCGGATGAAGCCGTATCAAGGGGCCAAGCGAGGCCGGATGTTCGGTTTGATCGGCGCGAGCTGGCTTCTTTCGGTGCTCCTCGGCATTCTCCCCATCATGGGCTGGAATTGCATCGGACATCTGGACGAATGCTCCACCGTCTTGCCTCTTTACGCCAAGAGCTTCATCCTCTTCTGCATTACGGTGTTCACCCTGGTGCTGATGTCCATTGTGGTGCTCTACATGCGCATCTTCCGCATTGTGAAGTCCAACACCCAGCGGTTAGGCTGCGGCCCTCAGCGCAAAGGTCTGGCCAGGAAGTCCCAGAAGTATCTGGCTCTGCTGAAGACGGTCACCATCGTTCTCGGGGTCTTCATCGCCTGCTGGTTGCCTCTCTTTGTGCTTCTTCTGCTGGACTTCTTCTGCCCGGCTCAGGGCTGCGAGGTGCTGTTCAAAGCGGACTACTTCCTGGGTATCGCCATGATCAACTCGCTCCTGAACCCCATCATTTACACCCTGACTAGTAAAGACATGCGGAGAGCCATTCTGAGACTGGTCTGCAGCTACTGTCTGATATCAAAAGATGGACAGGTGAAGAAGTTTGGCATGCCTTTCCTGGACTGCAGCACCAGTAAGGTTGAGGTGCCTTCACAAAGGCTGGAGGGCTTGGAGACGACGGTCTCTTCTGGGAACTTCACACCATCCACTATTAAAGCTATTTACCCGAGGATACTGAAGAGCTGAGGAAGAACAGCGCATTGAGACGATGCTGCCTTAATGGACAGTTCAACTACTTCATGCTGAATATTTGTAAAACCGGACAAGTACGAGGTGCTCGGAAATGAATTCAGAAGACGTTGGATGAGATGGAAGTCATAAATGTTGCGTTTTGGACTATAGAGTAGAAGACTTGGATTCCTCCGCATGCATTATAGCAAACCACGAGGTTTCCAGAAAGCGTGGTAGACCAGACaagatttcttttttactgTGATAAATACCAGTGTTTAAAATGGATTGTCTGTGGGTCAGACTCGCATTACAAGAGCTGCggtgcctttttaaaaataggagGTTCAACGGCAAACAAAAAGCGGTTATACAGCTGAACGTGATGCATTGTGCAAATGTGCTCTGCAAAGAACTCCTCAGATGTTATACGAGTCTCGCGtgagcattttcaaaaataacgAGCCGGTGCTGTTCAGAGATTTTGTGGTGAAAACACGCACAGAAAATGACTGGTTGGTGCCTCCACACACAAGCACGTTAGTCCTCGGgcattttaacaatacatacgcaggcaaataaaaactataaggCAAGCGACTATTTTTAAATCGGTAAATGTTTCCTTTTATACTTGTACTTTTGGGTTTTCATGTTAAAGCTCcccttaaaaatgtaagtatgctatacttttctatatttttggCTTATACAGGAAATATAGTTTCGGAGACGCaagctatataaatattgtatattttataaatattgtgagaaagtttttatgttgttgtatGGAATGGCATCGTTCATGTGTAGCAGTCTGCAGTGATAAAAACAGCACTGACATTCAAGCAATATTGCATTTCTGTAAAACTGTCTGTGTACTGAAAACAATGCATTcgtgtgtttaaatgtattttgtcgATCCTAAATTATGAgccttaaaaacaaatcttttataagtgcattaattaaaagtgttttcttGCA

Function

symbol description
s1pr5a Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and regulation of metabolic process. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; eye; heart; pleuroperitoneal region; and somite. Orthologous to human S1PR5 (sphingosine-1-phosphate receptor 5).

NR:

description
PREDICTED: sphingosine 1-phosphate receptor 1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235192.1 True 2548 mRNA 0.47 2 24614599 24618241

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-69e1.8 LOC107758106,LOC107658694,LOC107703890,LOC107728849,LOC107563364,LOC107559220 coding upstream 52010 24558746 ~ 24562589 (+)
hmgxb4a LOC107658693,LOC107758107,LOC107728447,LOC107703878,LOC107563362 coding upstream 57487 24549227 ~ 24557112 (+)
ankrd54 ankrd54,LOC107670919,LOC107559232,LOC107563363,LOC107719341,LOC107728844,LOC107703879 coding upstream 65506 24545411 ~ 24549093 (+)
foxred2 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding upstream 69385 24539323 ~ 24545214 (+)
gcat gcat,LOC107703894,LOC107670921 coding upstream 89999 24521028 ~ 24524600 (+)
LOC122342023 rln3a,LOC107658697,LOC107758104,LOC107559241,LOC107568237,LOC107696003 coding downstream 149388 24767629 ~ 24769271 (+)
il12rb2l LOC107758123 coding downstream 153050 24771291 ~ 24781610 (+)
LOC122342030 LOC107658707,LOC107559242,LOC107728516,LOC107695967 coding downstream 197632 24815873 ~ 24828439 (+)
LOC122342024 chchd4a,chchd4,LOC107574929,LOC107718204,LOC107715767,LOC107551797 coding downstream 213184 24831425 ~ 24833956 (+)
LOC122341374 NA coding downstream 234140 24852381 ~ 24855237 (+)
G23011 NA non-coding upstream 1848 24612526 ~ 24612751 (+)
G23004 NA non-coding upstream 50704 24563246 ~ 24563895 (+)
G23005 NA non-coding upstream 51472 24562812 ~ 24563127 (+)
G23002 NA non-coding upstream 56338 24557711 ~ 24558261 (+)
G22988 mfsd6l,LOC107719337,LOC107728393,LOC107583315,LOC107703882 non-coding upstream 164729 24268426 ~ 24449870 (+)
G23013 LOC107658701,LOC107758126 non-coding downstream 22339 24640580 ~ 24650704 (+)
G23027 NA non-coding downstream 112118 24730359 ~ 25090434 (+)
G23031 NA non-coding downstream 339070 24957311 ~ 25267157 (+)
G23044 NA non-coding downstream 461451 25079692 ~ 25087970 (+)
G23077 NA non-coding downstream 760987 25379228 ~ 25382913 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 83830 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 165310 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 175136 24434055 ~ 24439463 (+)
G22958 NA other upstream 517440 24095024 ~ 24097159 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other upstream 562686 24039902 ~ 24051913 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other downstream 103285 24721526 ~ 24811577 (+)
LOC122342019 LOC107758123 other downstream 365040 24983281 ~ 24993218 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 728543 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 793677 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 906068 25524309 ~ 25569403 (+)

Expression


Co-expression Network