tbcd (tbcd)


Basic Information

Item Value
gene id tbcd
gene name tbcd
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7166534 ~ 7197688 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235194.1
TCCTCTCGACTTGCCGTTACCGTGCGCTACAGGAGCGGCACGATCATAATAATACGCGGGATGCTGTATACTTTTTTCTCTACTGTGCTTTCATATCGCGTCGCATGTAAAACGGTTCGGCAACCTCTTGAAGAAGACAGCGAGTCGCTTTTAATGTATGTTTCCCGGTGTGCTGCAAAGAATAGAGCGCCTAGAGTCGGAGTTTGAAGAGAAATGAGTGTGTCATTGTGAGCGGCTTCAGTTTTGCTCCTTTAAACGTACAAACGCACGCAGTTTTAATCTGATCAACCAGAGACCTGATGGAGGGTGTGTGTAACGGAGAGGAGCCCGAGCTGGTGGCTCAGGCGTGTGTGCTGTCCGAGTTCAGTGAGAGCGACGAGACTCGAGCTCTCATCAGCGGTCTGCCCGACATCCATCACGACACGGTCAGCAGAGAGGCCACCATCGAGAAGTTTGTGGTTGTCATGGATCGCTACCAAGAGCAGCCACATCTTCTGGATCCTCACTTAGAGTGGATGCTGAACATGCTCTTAGAGATGATCCGCAGCGAGAAGTCTCCACCTCTTCTGGTCCACCTCTGTTTCAAATTCCTCTACATCATCTCAAAGGTCCGAGGCTACAAGATCTTCATGCAGCTGTTCCCCCACGAGGTGTCGGATGTTCAGCCGGTTTTGGACCTTTTATGTAGACAGGACCCTAAAGACACCGAGACCTGGGAGACCCGCTACATCCTCCTCCTCTGGCTCTCCATGACATGTCTCATTCCCTTTGACTTGTCTCGTCTGGATGGCCACCTGTCCACTGACCCCGGGCTGAACAGAGAGCCCATCATGGATCGTATTCTGGCTGTGGCCAAGTCCTTTCTCAGAGTGAGTGACAAATCTCGGGATGCCGCATCAGTGCTGGTGTCTAAGTTTGTGACCCGTCCGGATGTGAAGCAGAAGTGTTTGGGTGATTTTCTGGACTGGTCTCTGACCACCATCTCTCAGACCAGTGAGATGACCATGGAAGGAACTGTGACCCTTGACGGAGCTCTCCAATCCCTGGCCCAGCTCTTCAAGCATGGAAAACGTGATGATTTCCTGCAATATGCCCCGACAGTACTTCAGTGCCTGAATCAGAAGAGAATAGCTGAGAGTAACCAGGCAACGTTACGTAAGCTGGGAGTAAAAGTTGTCCAGAGGCTTGGCTTGACTTTTCTAAAACCACGTTTGGCCAGATGGAGATACCAGAGAGGAAGTCGGTCACTTGCTGTAAACCTGGCCCAGTCTTCTGTCACTGCAAGCATAGAGGCTACAAAACCTGATCTAGAGTCTGTCACTCAGGACGAAGATTATGACATTCCTCAGGAGGTAGAGAATGTAATCGAACAACTGCTGGTGGGTTTAAAAGACAAAGAGACAATAGTGAGATGGTCTTCTGCCAAGGGGATTGGAAGGGTAACTGGTAGACTCCCTAAAGAGCTTGCAGATGATGTGGTCGAGTCTGTTCTAGAGTGTTTCAGttTCCAGGAAACGGATAATGCTTGGCATGGGGGCTGCCTGGCTCTCGCAGAGCTTGGCCGAAGAGGACTGCTGCTTCCTTCCCGTCTCTCAGATGTGGTGCCTGTGATTCTAAAAGCCCTGACGTATGATGAGAAAAGAGGTGCATGCAGTTTGGGATCTAACGTCCGAGATGCTGCCTGCTATGTGTGCTGGGCTTTCGCTCGTGCCTATGACCCAAATGAACTGAAGCCTTATGTCAACCAGATTGCCAGCGCACTTGTCATCGCGACTGTATTTGACAGGAACGTCACCTGCAGAAAGGCCGCATCTGCTGCTTTCCAAGAGAATGTGGGCAGACAGGGCACCTTCCCCCATGGCATAGATATTCTTACAGCGGCGGACTACTTCACGGTCGGTAACCTGAACAACTGCTACTTGACTATCAGTGTCTACATCGCTGGTTTTGAGGAATACACCAAACCCTTAATTGACCACTTGGTGGCTATGAAAGTCAATCACTGGGATGGGGTGATCAGAGAGCTGGCCACGAAAGCCCTGCACAATCTAACCGTCCGGGCTCCTGAATACATGGCCAAAACCGTGTTGCCCCAGCTGCTGCCCATGACCACAGGCATGGATTTACATAGCCGTCACGGAGCTATCCTGGCCTGCGCTGAGATCACTCATGCTCTCTATGAGCTTGCAACCCAGAACAATAGTTCGGTGACTGAATTCCTGTCCTCTGACACCATTGAAGGCCtaaaaaacattcatcaaaagCTCTCCGACAGAAAGCAGTACAGGGGATTTGGTGGAGAGCTAATGAGACCAGCTGtctgTAGCCTCATTGaaaagctctctctctccaagATGCCTTTTGAAGATGACCCAGTTATTACTGGTTGGCAGTGGCTAATAGACGACAGCTTGAAGACCCTTCACATGTTCTCCAGCGGAGCCAGGCGGGGTATACAGgatGCCGCAGTGTCTGCACTGGCAGCCTTGTGCCGGCAGTATTATCAGGTTGAACCAGGGTTAGCGCATGCGGAAATGCAAGATCAGCTGGTTAGTCAATACCTGTCGGCCCTGGAGAGTCCAGAGGTTCTGACGCGCTGCGGCTGTGCTCTCGCCCTGGGCTCGCTGCCTCCATTTATGATCCATGGAAAACTACAGAAGATCCTAACTGGGCTCCAGGCCGCCTGTAAGGTTGtgcagaaagaagaaagccTAACAGAAGCCAGGAGGGATGCGGCCGCAGCCATGTCTCAGGTGTGTGTAGCTGTAGGAGTGCGTGCACGAGGCAGCCCCGAAAGCGTCCTGTGTGAGGACAACATAAGGCCAGTGTACGAAGCCTTGCTGGGTTGTATGAACGACTACAGCACGGACAGCAGAGGTGACGTCGGAGCCTGGGTGAGGGCGGCAGCAATGAGCAGCCTGACGGACGTGACCCTGCTGCTGGTGGCGTCTGCTCCAGAGCTCCTCTCCTCAGACCTAGTTCAGCGTATGATGTGTTGCCTGACCCAGCAGGCTGCAGAGAAGATCGACCGCTACCGAGCTCACGCCGGCACCGTTTTCCTGCGTCTGCTTCACAGCTCAGACCCCGCAGTACCTCACATTCCCCACCGAGAGGAGCTACTGAGCGTCTTCCCTCCAGAGACTGGAAACTCCCTGAACTGGAACGCTGCATCACAGGCCTTCCCTCACATCACACAGCTTCTGCGGCTGCATCAGTACCAGTACCACACGCTCCTGGGCCTCACCGTGTCTGTGGGAGGCCTCACCGAATCTACAGTGCGTTATTCCTCTCAGTCATTATTCGAGTACATGAAGAGCGTTCAGCAGGATGTCGCAGCCCTTCAGCAGTTTGGAGACACACTTTTACGCATCTTCAGAGATAACCTGCGCAATGACAGAGTTTCTGTGCCTTTACTGAAGATGGTGGACCAACTTCTGGCCAACGGCTGCTTTGACCTCTTCGCCAGCGAGGAGAGTCATCCATTCTGTGGAGAGCTGCTGTCGCTCTGTAAAGAGGAAATCAAGAAGTCCAAAGATGTGCAGAAGCTGTTGTCAAGCATTGCTGTGTTCTGTGGAATGGTGCAGTTCAAGGGTGACGTGAGGAAGAAGGTCTTAGTGCAGCTGTTGATGTTGCTCTGTCACCCCTTCCCTGTGATCAGGAAGACGACAGCCAGCCAGGTATACGAGATGCTCTTGACCTACGATGATGTCATTGACGATGATCAAGTGCTGGCTGATGTCATGGCCTCGCTCAGTGACACTAATTGGGAAAGTGACATGGCCACAGTGCGGACCCACAGGAATCAGCTCTGTGATTGGTTGGGAGTGCCCAGGCCCACTCTGGTAGCCAAGacTTCTCCCCAATAAATCCATTCCTACCTGATGGCCTTTTTGCACTGCTTTCTGTGAGGACATCATGGACAGTGTCCACATGTCCTCCCTGCTGTCAGATAACGTCGTCCATCTAATAATATCCGACCTGTCATCATTAAATTCTTAAGAAAAATG

Function

symbol description
tbcd Predicted to enable GTPase activator activity and beta-tubulin binding activity. Acts upstream of or within brain development and retina layer formation. Predicted to be active in lateral plasma membrane. Orthologous to human TBCD (tubulin folding cofactor D).

NR:

description
PREDICTED: tubulin-specific chaperone D isoform X1

GO: NA

KEGG:

id description
K21767 TBCD; tubulin-specific chaperone D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235194.1 True 4007 mRNA 0.52 39 7166534 7197688

Neighbor

gene id symbol gene type direction distance location
LOC122329403 fn3krp,LOC107670452,LOC104918611,LOC107599346,LOC107744985 coding upstream 1979 7160754 ~ 7164555 (+)
si:ch211-207b24.4 NA coding upstream 9237 7148922 ~ 7157297 (+)
ppap2d ppap2d,LOC107661820,LOC107711217,LOC107602726,LOC107744960,LOC107670514,LOC107599313 coding upstream 277729 6862409 ~ 6888805 (+)
tnfsf14 LOC107744984,LOC107661863,LOC107711150,LOC107602699 coding upstream 319893 6841019 ~ 6846641 (+)
dnm2a dnm2a,LOC107661823,LOC107602725 coding upstream 333310 6796786 ~ 6833224 (+)
metrnla metrnl,LOC107672492,LOC107711221,LOC107587969,LOC107744963,LOC107670526,LOC107599318 coding downstream 44009 7241697 ~ 7251923 (+)
slc16a5b LOC107672512,LOC107711222,LOC107587967,LOC107599319,LOC107744965 coding downstream 73262 7270950 ~ 7281036 (+)
LOC122341489 LOC107587965,LOC107672450,LOC107711223,LOC107744987,LOC107670478,LOC107599348 coding downstream 97269 7294957 ~ 7300733 (+)
hs3st3b1a hs3st3b1a,LOC107711227,LOC107672504,LOC107587963,LOC107599323,LOC107744967 coding downstream 165228 7362916 ~ 7374464 (+)
ttyh2l ttyh2l,LOC107744973,LOC107670532,LOC107599325,LOC107711233,LOC107672455,LOC107587999 coding downstream 421962 7619650 ~ 7648946 (+)
G17704 NA non-coding upstream 190269 6922196 ~ 6976265 (+)
G17699 NA non-coding upstream 263373 6902746 ~ 6903161 (+)
G17683 NA non-coding upstream 318928 6846938 ~ 6847606 (+)
G17663 NA non-coding upstream 461129 6705195 ~ 6705405 (+)
G17662 NA non-coding upstream 461832 6704414 ~ 6704702 (+)
G17806 NA non-coding downstream 67655 7265343 ~ 7282946 (+)
G17808 LOC107587964,LOC107599321 non-coding downstream 112486 7310174 ~ 7314152 (+)
G17861 NA non-coding downstream 194903 7392591 ~ 7392872 (+)
G17862 NA non-coding downstream 200551 7398239 ~ 7398465 (+)
G17867 NA non-coding downstream 211550 7409238 ~ 7409540 (+)
G17590 NA other upstream 609784 6504915 ~ 6556750 (+)
LOC122341437 LOC107718607,LOC107653460 other upstream 971496 6186808 ~ 6195038 (+)
fbxw9 fbxw9,LOC107661857 other upstream 1062908 6098201 ~ 6103626 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other upstream 1203646 5957403 ~ 5962888 (+)
G17302 NA other upstream 1568302 5597099 ~ 5598232 (+)
LOC122331592 LOC107744988 other downstream 385666 7583354 ~ 7591526 (+)
baiap2a baiap2a,LOC107672452,LOC107711237,LOC107670476 other downstream 458343 7656031 ~ 7725519 (+)
slc27a1a slc27a1a,slc27a1,LOC107670527,LOC107757377,LOC107567246,LOC107711240,LOC107672489,LOC107587997 other downstream 610555 7808243 ~ 7821078 (+)
LOC122341274 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494 other downstream 641268 7838956 ~ 7841669 (+)
LOC122331768 LOC107710248 other downstream 752073 7949761 ~ 7950417 (+)

Expression


Co-expression Network