litaf (litaf,LOC107727125,LOC107703380,LOC107674718)


Basic Information

Item Value
gene id litaf
gene name litaf,LOC107727125,LOC107703380,LOC107674718
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17043049 ~ 17045292 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235204.1
GACCAAACACGGAACTCAAGGGGGACGTCTAAAAGTCTTTCTCCCGTTTATCGATAAAGCCCTCGCTCTCTGCTAACTAGCTCCTTCGAGTTACACACATATCGACTGGACGACGGCTCTTGAGGCCCGAAGCGTGTAGTTTCGCTCTGGCGGTCTTATAAGAGAGCTCAGCCCACCCGTCTCTTGCGGAAATACAGCGAGTGCGCCACAGAACTAAGAAGCAGGAAACGCGTTCAGTCCGATCGCTCCTGAGCGTCTTCTCTAGAAAACCACAACAAACAAACCCATCCGTGAAGGCGATGGCAAGCGCACCCCCCTTGGAGTCCTCCACGCTTGTGGGACACCCTCCTCCTCCGTCCTACGAGGAGGCGCTGGGGTCAAACCCACACTATCAGCCAATGCCCTGTGCTCCAGCCCCTGACATGAAGACATCCGTGCCTCCGTATCCATCACAAGCCTACAGCCCCATGTATCCTCCACCACCAGCCCAGCAGGGTCAACCCGTCACCGGTCCTGTTGTTTCTGTGCAGACCGTGTACGTTCAGCCTGGTCTGGTGTTCGGGAGCGTCCCAGTGCAGGCCCACTGTCCCGTGTGTTCACAGAACGTGATAACCCACCTGGTGCATACATCGGGAGCTTTAGCTTGGCTCTCTTGTGCAGGCCTGGCCATTTTCGGTTGCATCTATGGCTGCTGCCTGATTCCCTTCTGCGTGGACGGCCTGAAGGACGTGATACACCACTGTCCGAACTGCAGCAGTGTTTTAGGAGTCCACAAGAGAATCTGAATCAGCTGCGGAACATAGGAATGAGTTGTGTAGCTTACCACCCTGTATTTATAATTGGAAGAAGTTACAGTGAATTCATTCTTCAGCAAGTTAATTCAATATCTATGCCACTGGCACATTAACATGTAAtcatacatgtgtgtatgtgagcacgcacacgcacacacacacacacacacgcacactagACTGGTCTTTATATTATAAACTGATTTAACTAACAACTGAACTTTAATcgtttgttttttaacaatagtatttaatataacaaCTGTGAAGGAATCTTTGTAACATTTGAGGTATGCATATATACAGTGCAGTTATTCTCGGTTCTTCTTTCCGTAATCaaagtgatttagaaaaaaatagaaataaataaacatgttcatgcttttgcatttaaaa

Function

symbol description
litaf Predicted to enable zinc ion binding activity. Predicted to be located in cytoplasmic side of endosome membrane; cytoplasmic side of lysosomal membrane; and cytoplasmic side of plasma membrane. Is expressed in pronephric duct and pronephric duct opening. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 1C. Orthologous to human LITAF (lipopolysaccharide induced TNF factor).

NR:

description
lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K19363 LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235204.1 True 1190 mRNA 0.48 4 17043049 17045292

Neighbor

gene id symbol gene type direction distance location
zc3h7a zc3h7a,LOC107727124,LOC107564690,LOC107674666,LOC107703382 coding upstream 5562 17024634 ~ 17037487 (+)
trnat-cgu_1 NA coding upstream 37064 17005914 ~ 17005985 (+)
LOC122341973 NA coding upstream 107530 16934133 ~ 16935519 (+)
galr2b galr2b,LOC107674614,LOC107564701,LOC107753547,LOC107703387,LOC108433115,LOC107745605 coding upstream 140079 16895969 ~ 16902970 (+)
zfand2a zfand2a,LOC107703388,LOC107568938,LOC107674713,LOC107745591 coding upstream 160968 16876854 ~ 16882081 (+)
LOC122341850 LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC108433148,LOC105013234 coding downstream 44522 17089814 ~ 17097965 (+)
LOC122332748 NA coding downstream 336491 17381783 ~ 17384185 (+)
hs3st2 hs3st2,LOC107741797,LOC107550309,LOC107574133,LOC107703334,LOC107674621,LOC108433116 coding downstream 377996 17423288 ~ 17449492 (+)
ube2ia ube2i,ube2ia,LOC105013396 coding downstream 520971 17566263 ~ 17570451 (+)
baiap3 baiap3,LOC107719179,LOC107550313,LOC107703313,LOC107674731,LOC107565767,LOC107749910 coding downstream 533448 17578740 ~ 17622221 (+)
G20797 snn,LOC107564698,LOC107703342 non-coding upstream 645 17039191 ~ 17042404 (+)
LOC122341954 NA non-coding upstream 23745 17007395 ~ 17019304 (+)
G20744 NA non-coding upstream 255999 16786832 ~ 16787050 (+)
LOC122342129 NA non-coding upstream 445834 16596292 ~ 16597215 (+)
G20656 NA non-coding upstream 735031 16307798 ~ 16308018 (+)
G20801 NA non-coding downstream 12412 17057704 ~ 17062823 (+)
G20829 NA non-coding downstream 29330 17074622 ~ 17074824 (+)
G20830 NA non-coding downstream 30061 17075353 ~ 17075575 (+)
G20831 NA non-coding downstream 30496 17075788 ~ 17076174 (+)
G20803 NA non-coding downstream 62700 17107992 ~ 17108694 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other upstream 258238 16770545 ~ 16784811 (+)
LOC122331507 psmg3,LOC107703392 other upstream 343567 16690703 ~ 16699482 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other upstream 835203 16179620 ~ 16207846 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other upstream 1298855 15706936 ~ 15744194 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 1762936 15269800 ~ 15280113 (+)
nsmce1 nsmce1 other downstream 67756 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 92638 17137930 ~ 17200630 (+)
G20950 igfals,LOC107703367,LOC107719182,LOC107674637,LOC107565761,LOC107710645 other downstream 673890 17719182 ~ 17723423 (+)
mrtfbb LOC107725018,LOC107572174,LOC107703365,LOC107674669 other downstream 824885 17870177 ~ 17901491 (+)
polr3k polr3k,LOC107703329 other downstream 859292 17904584 ~ 17906643 (+)

Expression


Co-expression Network