lfng (lfng,LOC107703400,LOC107674646,LOC107758333)


Basic Information

Item Value
gene id lfng
gene name lfng,LOC107703400,LOC107674646,LOC107758333
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16293222 ~ 16301224 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235266.1
TACAATGAGGAGACTCTCAGCGCGATTATGTTGCATTCGGATGACACGCTTGTTTTTTAGTGTAGGCTACTGGAGGGAGGTTTAGGTTAATGCTGTGTATATCACAAAGAGAGCGTCCTTCTCTTAGAGTTTAATGAACATGTCGAAAGCGTACGGCAGGAAAGCTATGCTCTCCCTCGCGGGGGCGACCGTCACCTGCTTCGGGCTGCTGTTGTTCCTGTCGCAGCATCAGCGGACTCAGATGGACGGGATGCAGAACGAGAGTGAGGTCGGTTTGCGCTCGCTCCAGAGTCTGGGAGAGTCAGAGGCGGATGATGGAGCTCAGTCTGAGCAGAATGGAAAGAAAGGATTCTCTGCCTATTTTTCAAAGCTGACCCGCAGCAGGAGGGAAGCGGATAAGCCCGGCGATGCGCCGGGAGCGACAACAGACGCGCCGCCTGCTGAGGACATCAGCGCGGATGACATCTTCATCGCAGTGAAGACCACTAAGAAGTTTCACCGGTCCAGACTGGACCTACTGCTGGACACCTGGATATCCAGAAACATGCAGCAGACATACATCTTCACAGATGGCGAAGATGAAGAACTGAAGAAGAAAATCGGAAGCCGTGCTATCAACACCAACTGCTCTGCTGCCCACAGCCGCCAGGCTCTGTCCTGCAAGATGGCTGTAGAGTATGACAAGTTTATTGAGTCTGGAAAAAAGTGGTTTTGTCATGTGGATGATGACAACTATGTGAACGTGAAGACACTGGTGAAGTTGCTGTCCAACTACCCTCACACTCAGGACATGTACATTGGGAAACCCAGCTTGGACAGGCCAATTGAGGCCACAGAAAGACTTGGGGACAACAAGATGAGACCTGTCAATTTCTGGTTTGCTACGGGAGGTGCAGGATTCTGTATCAGCCGTGGGCTAGCTTTGAAGATGAGCCCTTGGGCAAGTGGTGGCCATTTCATGAACACTGCAGAAAAGATCCGTCTTCCTGACGACTGCACCATCGGCTACATCATCGAGTCAGTTCTTGGGGTCCCTTTGACTCGAAGCAGCTTGTTCCACTCACATTTGGAGAACCTGCAACAGGTGTCCAAATCAGAAGTATACAAACAGATTACATTGAGTTATGGAATGTTTGAAAACAAGAGGAATATCATCAACATGAAAGGGGCTTTCTCTGTTGAGGAGGACCCATCTAGGTTTAAGTCAGTGCACTGTCTGCTGTACCCAGACACTCCATGGTGCCCTCCTCAGGTTGCCTATTAAGGTGACCGGCTCCTCTGTTGTATCCTCGTCCCTCACTGCCTCGGTATCTGAAAGGCATGAGGGACCAGTGTGGTATTGGGCCGTGTGGCCGCTGCGTTTACTCTGCAGTGGCGCATGGCCTTCCGTGGTTATACTGGGCTGCTGTGCGGCCCACCTTTAAACAGTTCCTTCCTGCCTGGTGCCTGAGCTTCCTGTCCAACTCAGACACTACGAAGGGCCTGGCTTTCAGAAGGACGCTTTCAGCGCCAAGCTTTGCAGGCAATCAACTGTGCTTTATGTGATTACTGTTGCTTGTATCCCATTTGCAATTCTCATAGAATGTAACTTTCTAGTATACCCAAGCCTTTTGCCAGCTTTATATGCTTAGTTGTAAATTCTAATTAGCAAATTAGCgcatactttatattttattctctcCAAATGCCGTTCAGGATGTTCTTTCCCTCAGGTTTGATTTAATGATcaagttgtttaaaatattcagaGGAAATAAGTAACAAGGGTGCTTTATTATCTAGTTCTAAAGGACTCCGGACAAAATTAATGAGATGAAGGTCCACTTTTTTgcaaattgatttatttgatgtcagtgttattatattattattgctattagttttttttatgacattttgtgCTGGCAATAGGCAAATTTTCCAAATATACTGTCAGGTTATTTTAATCTGTGGTGTATGAGGACTGAGCACTTTTCTCCCTAAATCCTCTGGGCATTTTATGGTGATTGAACTGTTATAGCTGTGTTAAAAAATTATCAAGTGCCCAAATTTTTAgatctttatattatttaatgccaATGCATTCACACAATCTTGGCAGATAGATATGAGATTTTTggcatgatttattattatagttttttttaagctttgcTCAAAGATGTACTGAAGTGGGAGTTGCACAGCTTGGTTTAAAATACCTGTTGGTTGCTCAATTAAAGTGTCTCCTAGCATTCGCTTAATGCCGTTTACTCTTTTGAACTGGCACCAGGGCCACTGTCAACACAATGTACATTGTTAAAACAGATGGCAGCTAAAGTTTAAGATGTGTTTATAGCGCAGATCTTAGTACTCTGATCCCTTTTGCACAAAGTGGTCTGGCACAGAGCCACAGTTTTCCCCATTCCTACACGGCTGACAGTTGGACATAACTATGCCAACTATACAAAACATGTTAAGTGAGAGCTTTACATGAGCAACAACAGTGATCCTAATAGAGTTGCAGTTTCTCTATGGGAATGACCCATATTGGGTGAgcctgtatattttattttaaagcagtatttatGTACTGTGCCATTTCAAAACAATTGTATTTGTACATAATTGTTTAGATATTATATGCATTTGGTCACCTATGGATCAGACCTAGTTCTGATGATTcctctaaaatgtttttaatgctctGAATTTTGCTTATGGCTGTAATTTATATTCCAGTATCTGGATTCTTTGTTCAAATGTTGTTCTCTCAGGGATCACAATCCTGATATTGTTACCATGCTCCGTCTTGGTAATTCACCATTCAGCTTTTGAATAAAGCAGCATATTCGCTAAGAAACTTTA

Function

symbol description
lfng Predicted to enable O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity. Acts upstream of or within fin regeneration; hypochord development; and negative regulation of neuron differentiation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Is expressed in several structures, including blastodisc; central nervous system; germ ring; neural plate; and sensory system. Human ortholog(s) of this gene implicated in spondylocostal dysostosis. Orthologous to human LFNG (LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase).

NR:

description
beta-1,3-N-acetylglucosaminyltransferase lunatic fringe-like

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0055016 hypochord development biological_process
GO:0007389 pattern specification process biological_process
GO:0045665 negative regulation of neuron differentiation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0033829 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K05948 FNG; fringe

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235266.1 True 2847 mRNA 0.44 8 16293222 16301224

Neighbor

gene id symbol gene type direction distance location
chst12a chst12,chst12a,LOC107703401,LOC107758335,LOC107581708,LOC107674724 coding upstream 64044 16222200 ~ 16229178 (+)
eif3ba eif3ba,eif3b,LOC107703402,LOC107674692 coding upstream 72007 16212367 ~ 16221215 (+)
card11 card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320 coding upstream 118132 16150853 ~ 16175090 (+)
mmd2a mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066 coding upstream 446256 15835083 ~ 15846966 (+)
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding upstream 464239 15823776 ~ 15828983 (+)
snx8a snx8,LOC107758331,LOC107592787,LOC107674736,LOC107703396 coding downstream 58688 16359912 ~ 16369501 (+)
mrm2 mrm2,ftsj2,LOC107703397,LOC107674604 coding downstream 71545 16372769 ~ 16375491 (+)
LOC122342073 NA coding downstream 160094 16461318 ~ 16462690 (+)
LOC122341966 NA coding downstream 172598 16473822 ~ 16475189 (+)
tmem184a tmem184a,LOC107581701,LOC107572042,LOC107674661,LOC107745595 coding downstream 399197 16700421 ~ 16715677 (+)
G20647 NA non-coding upstream 416 16292605 ~ 16292806 (+)
LOC122333245 NA non-coding upstream 412553 15879468 ~ 15880669 (+)
G20469 NA non-coding upstream 413893 15879130 ~ 15879329 (+)
G20468 NA non-coding upstream 414796 15878189 ~ 15878426 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding upstream 417263 15874033 ~ 15875959 (+)
G20656 NA non-coding downstream 6574 16307798 ~ 16308018 (+)
LOC122342129 NA non-coding downstream 295068 16596292 ~ 16597215 (+)
G20744 NA non-coding downstream 485608 16786832 ~ 16787050 (+)
G20798 NA non-coding downstream 687988 16989212 ~ 17052645 (+)
LOC122341954 NA non-coding downstream 706171 17007395 ~ 17019304 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other upstream 85376 16179620 ~ 16207846 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other upstream 549028 15706936 ~ 15744194 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 1013109 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 1108349 15149112 ~ 15184873 (+)
LOC122331507 psmg3,LOC107703392 other downstream 389479 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 469321 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 811824 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 836706 17137930 ~ 17200630 (+)
G20950 igfals,LOC107703367,LOC107719182,LOC107674637,LOC107565761,LOC107710645 other downstream 1417958 17719182 ~ 17723423 (+)

Expression


Co-expression Network