cdk5r1a (cdk5r1a,LOC107709992,LOC107689695,LOC107601231,LOC107688088,LOC107753032,LOC108442536)


Basic Information

Item Value
gene id cdk5r1a
gene name cdk5r1a,LOC107709992,LOC107689695,LOC107601231,LOC107688088,LOC107753032,LOC108442536
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13462052 ~ 13468151 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235288.1
ACTGCGCCACTGAGCTCTACAAAGGCTCGGCGACATTACTGCACATCAGGATTTAAGTTAATCTGTCTCGAGCGTTGTGTGTGAGACTTTCCACACTCTCTGGGTCTTGATTAAAGACTGTAATCTGTCAACAGCTGGCCCGTCATGCAGAAACAGGGCATCTAAAGTTAAAAGTCTACCTTTCACGTTGAAGCTCAGGAAGCGCTATAACAGCTGCTCGGTGCTGTGGACAGCGCGCACATGAAGCATCAGGGACAGATAACCTGAGGGAGCCCAGCCACCCATCTGAGATTCGGCTTCTCCACGAGAGCGCACCAATGACCCCGCTCTCTGGAAAAATAGCGGTCAATGATCGAAGTCTGACGCGGAGCTTTATTTTTACGCATTTCTAGTTACATTCGAGCCTGGCGTGTAATTCCTCCGCCTGCGCAGTTCAACAGCAAGATCACAGACGGGCAGACGTAAAACAGACCCGAGATTGATTGTGATGAACGAGAAGCAACAAAATTGCCCTGTATCGAGGGTTTATGTGGGAAGACGTGGCGCGCATCTGGGAAGTAACCTTAGCAACCGGAGAATCCTGAACCCTGCATCGTTGCTTTACGTAGAAGCATTATTTCATCGCTGACGTCCCATTTTCAGAACCTTGGACAACGACGAGCACGTTCCACAGTGCGACACGCTGAGGAAAAAGAGGATACTCGacgaatatttatatatttacctattcttcttcttctatatCTACATTTATCACAGCGAGGAAGACGGATTGATTAATTCTGTATCTAAAGACCCCGTAATAATCAAGGCAACATGGGAACTGTACTCTCAGTCTCCCCGAGCTACCGAAAGGCAGGCCTGTTTGATGAAATACCACCCCCTCTGGCACATTATACAGCTGTGCAGAACAGTAAAAACGCCAAGGACAAGAGCTTGAAGCGTCAGTCGCTCATCAATGTCCTGCCATGGAAGCGCATCGTGGCAGCTTCGGCCAAGAGAAAAGGTTCTAAGAAGCTGGCCTCTGGGGACAGTCAAGATGAAGAGAGCGTGGGCACCCTCAACAGCCAAAACCTGAAGAAGTCCCAGTCTTGTGCCAACCTCTCCGGCTTCACCCAGGAGCCGGCCGTGAGCTCCATTCCCACCTCCAAAACCACCGCCAATGTGGCCTCCACTGCGAAGAGGACCTCCATCACTGGATCGGTGGGCCAGGCGACCAACGCGGGCACACCCAAACGAGTGATCGTGCAGGCCTCCACCAGCGAGCTCTTAAGGAGCCTGGGCGAGTTCTTGTGTCGCCGCTGCTACCGTCTGAAGCGCCTCTCACCCGCCGACCCCGTCCTGTGGCTGCGTAGCGTGGACCGTTCCCTTCTGCTGCAGGGCTGGCAGGACCAGGGCTTCATCACCCCCGCGAACGTGGTCTTCCTCTACATGCTCTGCCGTGAGGTCATTTCGGCCGAGGTGTCCAGTGAGCGCGAGCTACAGGCCGAGCTGCTCACTTGCCTCTACCTGTCCTACTCCTACATGGGAAACGAGATTTCATACCCGCTCAAGCCCTTCCTGGTGGAGACGGATAAGGATGCCTTCTGGAATCGCAGTCTGGCGATCATCAACCGCATGAGTAGCAAAATGCTCCAGCTTAACTCTGACCCGCACTACTTCACGCAGGTTTTCGCTGACCTGAAAAACGAAAGTCAAAAGGAGGAGGAGAGCCGGCTGCTTATAGGCCTGGATCGATAAGTAAGGCGTTGGTgcataaacagaaaaagaatgtgcataaaaagtttgtgcacacacacaaaaaaacattgttttctttgttttgttttttttacaaaaaacactttagtgTCATTAGTATTAAAAAGCTTCAGAGCATAGTTTTGAAGCTTATTTGTAGCAATGAATGCGACtagaaggaatagttcacctataAATAAGAATGTGTACTTtttactcatcctcaggccaCCCAAGATGAGTTGAGTTTGTCTCACTCGCTCACTAATagatcatctgcagtgaatgggtgctgtcgtaattttttatttaatttatttttatttgtccaGGAAAAGACAATTAATTACTGAGATTAAAAGAAATCTCTTCTTCCAGGAAGTCCTGGCCAATATGGCAGCgcaaaataaaattcacataAACGTAAAAGTAACATaccaaaaaacaaagaataatacacaaataaagcaaaacgaTAATcataactaaacattttaattaaaacagatttttttttaaataatattcaaagaAAGAATTGCTTCTAGTGGAGTATTGATCTGAAAATCATTCCACAACCAAGGATCAAAGTAAGAAAAGCAGATTTTCCATGTTCACCCCAGGTACTTCTAATTAAATCCCAATTGAAGATCTGGTTGAGTAGTTATTTCTACACAAACTTAAAAGCTTACTAATATACTTTAGAGGCATACCCCGcaatgagagcccaaacagctgatgaagacATCCACAAGACTCTATCAATTATAAGGTCTATCAATGAATGTcttttgaagtaaaaagctgTCTGTTTGTATTAAAAAGGAGTTTAATCTAATATATGAGTCTTCTATTCATGTTATTGCTTTCACCAGAGAAGTGCGGACCAATAAAGCGCcgtttgcaaacaaaaactgttcaaaaccaacggcacccgttcactgcagaAGATTTATTagtgatgctaaatttctccaaatctgttttgatgcacaaacaaattcatctacatcttggatggtgTGATAGTGAGTAAATGTTCaagaaattcttattttttagtgaactattcctttaaggtctGACCAAGACGCAGGACGACACCTTGCCAGCCAACAAGGTGTTCATTGACGGGTCGCGTGGCGTTCCTGAGGTCAACGAATCAACTGCAGGATAAACCGACCGTGCAGCATGTCGACCTTTCCAAGTGATTCcatccacacacaaacacgagcAGCAGTCTTTATGACTCCCAATAAAAAATGCTTCTTGACTCTTGACTGAATTGAAAAGCAATCCTTACAGCTTGCCGTGCTCACAACAGACTGAGTAGTTTGAAAACGAGAGCCGAGTTAGCGACACTTTCAAAATTGTACAAACCAAAGACTCTAGTTTGACCTTCTGCGATTTCTACATTCACATAAATCCTACACATTGAGGAAGTGATATATATATGAGGACCGTGAACTGCTGCTCTTGCATGGCATCACGTTTTCAACTTGTTACGTTTGTTTAGCATATCTTAGTGGCCTTTAAAGAAGGTCTGGGTCTTAAACTGCTGCAGGTTCGAGGCCATTTGTTGAGGTGGTCTGTCCAAACATAcatcagttgttgttgttaatgaCATTCTATATTAAGGAAATTTATTGTTCTTTACGAGCTAAAATGATTCACAATTTGTGATGAAGAAACGACCGCACCGCTTCCAACTTTCATTCTGAGAAGGAGACTTGTTTTCCAAGTTGCGCTACCTATCGTCATTATTGAAAAGAACTGAAATGTCTAATAGGGAACAAACAAACGGAGAGGtagatattttatgtattttcaacAGCAAGTACTGTATGTTCTTATACGGGTGTTAATGCATGCTTCTTTGACCGaccacacactttttaaaagatCTTTGTTTATGATTTGATGGTCACAATTTTTGTATGATGTTCTTTTGGACGGTGTTCCAAAACTAATGTGccataaagacataaaagttataaaagtCAGCTAGAAGTACACTAAGTTTTTGTAGCCTTCTCATTAGGAAAGGGATATTTTTGAAGGGGCAGAGGAGAAGGGGCATTATAGAAAGACTTGAGTAGGAGACATACAATGtcacaaatattttgttaaaaaagaaagggaaaaatgCTTGTATTGTTGAAAATCGCAATCGTTTTCCATCCATTATAATGTCCAGAATACTATTTTCATAATTATGCTTGCATACGAAACcctacagttattttaaatacacaaaagccCTATATCAGATACAAGAAACTCTGAAAAACATAATAGTGCAAGAGTCACATGCTAAAAAAGTAACCGTTACTATTTAGCTTAGAAAAGGCCTGTTAAAAGAAAGCACTTACAAAAATGATACATATTAATTTTGCCCAAAAACACTCCTTTTtagtcttctttttttccagcaaTGTGTGCGCTCTCACGTATCTGAGAGAGAGTATTAACAAATTTGAGAACACAGTTGGTTTGATTTCACTTCCGTAATTGGACACACGCTACAAACCAGTGTTAATAGTAGATTGGTTGCTGATGAGATGTTTTAAAGTGATGTAATCAGTAATCATCCTGAGAACAAGGTGCAGTCGTTCCTGTGAATGAGAGATTTTCATCAGCATTTTCTCGATGCGTTGTTCACTCATTGTTCAAGCTTATATGACTTGAGGACAAGCGCACCATTTTGTTAAAGGTGATGAAGGAGGTACTTTAAAGCAGTTCACGGgtataatattaacatttgcaAAGGGGTTCAATAGATATTTGACTCTTAACAGGCCTTTGTGGAAGTGCAGCAGCTTTTCAATATGCAAACGATAAGATACTGATGAAATGCTAAGAAGAATTACCTGTAGCACACAAAAGTGATCAAATCAACTCAGATGGCAGGTCATCTGTGGCCTGATTGCACTACATTTAGCAATATGCATATTTGAAGATTTAAAGATCAATGACTAACAAAAGCTAACAGAACATAGTCTTTAAAcccatttttgtcttttgtaagttttttttcagttgatgTATGAGATCATTTAAACACAAAGGTATTTTCTGATCATTTGGTGATATCGTATCTACATTTACCCCCCCATATTTTGTGTCTGGCCTCATTCTGATGAGACTTTCTGATGGTGCTATTGATGCAGATATCACGTTTTACCCATAACAAGACCTTTCTCATTGGTTAGCTGAATGTAGTTAAGTTTTGTACGAAGGGCAAAAAGACATTGACGCTACAACAACAATGGCTGCATTGGTAGAACGGGAAACAGGACGCTATGATAACGGACCATAACAGATCGGCTTGGAGAAAGGCCATTATTACAGCAACTCTGTTCTTGTCATAGATAACGAAAGAGGCAAAATTgtgttattatgttttatacaatttttgtgGTTGACGTAACATTCTTcaacagagaaaaaaactgtatagCAACAAGAGACTGATATatgattttctcttttctttatgTTTCACGTTGTGTGAACTTCGttgatcaaaatgaaacaacaaTGAGATGtaactaatatatttaaagaagcAATCTGTTACAGTATATGCGTGTGTATGAATGTGAGTTTGTGCAATGACTTTGGTCAACTCTTCTAtctactttatataaaaatgtgcatttgcaAGCAAAAACATC

Function

symbol description
cdk5r1a Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity and kinase activity. Acts upstream of or within intrahepatic bile duct development. Predicted to be located in plasma membrane. Predicted to be part of protein kinase 5 complex. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human CDK5R1 (cyclin dependent kinase 5 regulatory subunit 1).

NR:

description
PREDICTED: cyclin-dependent kinase 5 activator 1-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016533 protein kinase 5 complex cellular_component
GO:0016301 kinase activity molecular_function

KEGG:

id description
K11716 CDK5R1; cyclin-dependent kinase 5 activator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235288.1 True 5417 mRNA 0.41 2 13462052 13468151

Neighbor

gene id symbol gene type direction distance location
dusp3b dusp3b,LOC107753093,LOC107688089,LOC107590411,LOC107709997 coding upstream 67089 13391973 ~ 13394963 (+)
dlx4a dlx4a,LOC107709990,LOC107689696,LOC107590410,LOC107753083,LOC107688148 coding upstream 70546 13386428 ~ 13391506 (+)
znf207a znf207a,LOC107590415,LOC107698690,LOC107601239,LOC107689623 coding upstream 291798 13163996 ~ 13170254 (+)
slc25a23b slc25a23b,LOC107601238,LOC107698653,LOC107724434,LOC107689624,LOC107753149,LOC105898533,LOC108444036 coding upstream 299745 13154507 ~ 13162307 (+)
timm29 zgc:110046,LOC107736790,LOC107601237,LOC107698646,LOC107753167,LOC107689699,LOC107578239 coding upstream 325302 13134670 ~ 13136750 (+)
itga3a LOC107601250,LOC107689616,LOC107688090,LOC107709989 coding downstream 5357 13473508 ~ 13501419 (+)
ca10b ca10b,LOC107753024,LOC107601251,LOC107710000,LOC107689615,LOC107590442,LOC105907875,LOC108442538 coding downstream 33453 13501604 ~ 13520389 (+)
smarce1 LOC107590406,LOC107752998,LOC107601252,LOC107709999,LOC107689614 coding downstream 53064 13521215 ~ 13528518 (+)
prkcbb prkcbb,LOC107601253,LOC107689613,LOC107710001,LOC107590404,LOC107752983,LOC107688094 coding downstream 64419 13532570 ~ 13633527 (+)
cacng3b cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095,LOC108436978 coding downstream 181143 13649294 ~ 13683496 (+)
G19788 nsfa,LOC107689618,LOC107709994,LOC107601245 non-coding upstream 18474 13409739 ~ 13443578 (+)
G19798 NA non-coding upstream 19903 13441686 ~ 13442149 (+)
LOC122341620 NA non-coding upstream 50134 13408320 ~ 13411918 (+)
G19780 NA non-coding upstream 98322 13362886 ~ 13363730 (+)
G19777 NA non-coding upstream 101717 13359319 ~ 13360335 (+)
G19890 NA non-coding downstream 319682 13787833 ~ 13792555 (+)
G19891 NA non-coding downstream 347202 13815353 ~ 13818222 (+)
LOC122342149 NA non-coding downstream 445775 13913926 ~ 13920269 (+)
G19963 NA non-coding downstream 472465 13940616 ~ 13943491 (+)
G20009 NA non-coding downstream 632022 14100173 ~ 14101904 (+)
si:dkey-204f11.64 LOC105898698 other upstream 347196 13112477 ~ 13114856 (+)
LOC122332158 LOC107583070,LOC107737766 other upstream 474139 12835381 ~ 12987913 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other upstream 933249 12519837 ~ 12528803 (+)
G19326 NA other upstream 948331 12511926 ~ 12513721 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other upstream 1147006 12303364 ~ 12315046 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other downstream 230386 13698537 ~ 13710865 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other downstream 527810 13995961 ~ 14002378 (+)
G19973 NA other downstream 581339 14049490 ~ 14053032 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 650316 14118467 ~ 14119570 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other downstream 652034 14120185 ~ 14123128 (+)

Expression


Co-expression Network