cldni (LOC107729510)


Basic Information

Item Value
gene id cldni
gene name LOC107729510
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11278737 ~ 11281741 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235291.1
CCATTGCATTCCTCTATAAAAGCATCCTCGCACCACCTTCATTAGAGGTAACGGTTTGATAAGGTGGAAGACTAACTtaaagaaaaagctaaaagaCTACATCCAAAAACAAGAGGAAACTAAAAGAATTTTCTTCGGAAAAAGCTACAATAAAAGGATGGGCTCGTTTGGTGTACAGATCACGTGTATGGCACTGGGAATTTTAGGTCTCATTGCGGCGGTTGTGACCATTGCTGTTCCAAGATGGAAGGTTTCTGCTTTTATTGGTCAGAACATTATCACTGCACAGGTTCAGGAAGAGGGCTTGTGGATGGAGTGTGTGGTTCAGAGTACCGGGCAGCAGCAGTGTAAAGCCTACGACTCGCTGCTCATCCTGAGCTCTGACCTCCAGGCGGCCCGTGCCATGACCATCATCAGCTGCATGCTCGTGGTCCTGTCCCTGCTCATTCTGTGCGCCGGCGCCGAATTCACCACCTGCATCGACAACGATGCGGTCAAACCCAAAATGAGCCTGGTGTCCGCCGTTGGTCTGATCATCGCGGGCTTGTTACTGATCATCCCCGTCAGTTGGGCCGCTAATAATGTCGTCCGCGACTTCAACAATCCCCTGGTAGCCCAGCCTCAGAAGAGAGAGCTGGGAGCCTGCATCTTTGTGGGCTGGGCAGGAGGAGTCCTGCTCCTGCTGGCCGGAGGTTTGCTGTGCTGCTTCAGTGGACTCTGCTCCGGAGGATCTGGAGGATCCAGCGGAGCCGCCAAATACTACAGCAACAACCCCACTGCACCAAGCAAGAATTACGTGTAGATCCAACTAAGCATTGGTGGCAGAAATAGAGatatgggtaacactttacagtgaGGTTCATTGGCTAGCTACATGCACAGTACTCCTATAGCATTTATAATCTTAGTTTATGTTAATTCAGTAATGCATTCTTAAAatcaagttgtgtttgttaacattattaatgcactgtcagctaacatgaataaacaatgaacaactatattttcattaacaaaaatgaatagtgtaataaatgtatcgttaattgtttgttcatgttagttaattacaattaacttatgttaacaaatgttaccttattgtaaagtgcagccaaaatatgttaattttagTCTTTATAGCTAATGAGAATAACAAAGTAGAAAAGGTCAAGATCTGCAAAGATGTAAATATAACTTGTTTAGAGCTACTGTCATAGTCTTTAAGCTTTTAAATTAGCTTCATATAGTTTACTGCTGTAGTTTCTTAGAGCAGCTAATAAACAATGCActtgtttattaaaattcagGGATGGGCCGAGCTTGTGTCCAAAATACTTTCAGGTCATTGTATCAGTGCCAGTCCTTGTCATTTCAATAATGCTCCGGAATAGTTCACTGTTTTTGAGTAATACAgagcaaatgttttttcaaGTACTTTTTTTGGATGTGGGAATCTACTGTAATCTGTACAATTGCTACacaattttgtttgtgtgtgtgtgtgtgtgtgtgtattaggtCATAATCATTTCCAATGCCTTTctgtattttcaataaaactaaTTGATTTAAGACA

Function

NR:

description
PREDICTED: claudin-4-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235291.1 True 1582 mRNA 0.42 3 11278737 11281741

Neighbor

gene id symbol gene type direction distance location
mybpc2a mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding upstream 272103 10978149 ~ 11006634 (+)
akt1s1 akt1s1,LOC107729505,LOC107687628,LOC107551160,LOC107732888,LOC107577586,LOC107564011 coding upstream 324008 10948678 ~ 10954729 (+)
LOC122341641 LOC107729475,LOC107687632,LOC107551163 coding upstream 393114 10874237 ~ 10885623 (+)
ifi35 LOC107729476,LOC107687635,LOC107551164,LOC107680855,LOC107561363,LOC107732881 coding upstream 457790 10817730 ~ 10820947 (+)
cacng2a cacng2a,cacng2,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643,LOC108434911 coding upstream 509340 10711327 ~ 10769397 (+)
prf1.9 LOC107729509,LOC107583107,LOC107658427 coding downstream 23584 11305325 ~ 11308557 (+)
prf1.1 prf1.1,LOC107658428,LOC107583105,LOC107729447,LOC107732857,LOC107674141,LOC107564016 coding downstream 26941 11308682 ~ 11313369 (+)
si:dkey-66i24.7 si:dkey-66i24.7,LOC107674138,LOC107732877,LOC107658448,LOC107563999,LOC107729523 coding downstream 62528 11344269 ~ 11345934 (+)
si:dkey-66i24.8 LOC107658431,LOC107583056,LOC107729444,LOC107732851 coding downstream 81242 11362983 ~ 11367115 (+)
clec19a clec19a,LOC107658453,LOC107583104,LOC107736754 coding downstream 126296 11408037 ~ 11413269 (+)
G18932 ppp1caa,pp1g,LOC105897688 non-coding upstream 7631 11270202 ~ 11271106 (+)
LOC122336311 NA non-coding upstream 85742 11189556 ~ 11192995 (+)
LOC122336295 NA non-coding upstream 115830 11161878 ~ 11162907 (+)
LOC122342197 NA non-coding upstream 116294 11162354 ~ 11162443 (+)
G18903 syt3,LOC107680842,LOC106593647,LOC107551154,LOC107563990 non-coding upstream 168312 11108748 ~ 11110425 (+)
G18960 paqr4a,paqr4,LOC107674132 non-coding downstream 8006 11289747 ~ 11294605 (+)
G18982 NA non-coding downstream 89761 11371502 ~ 11375401 (+)
G18946 smg1,LOC107729485,LOC107583093,LOC107658410,LOC107732845 non-coding downstream 98532 11380273 ~ 11380790 (+)
G19123 NA non-coding downstream 155203 11436944 ~ 11437197 (+)
G19126 NA non-coding downstream 158765 11440506 ~ 11441338 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 436230 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 580197 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 1175276 10025818 ~ 10103461 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 1478941 9798815 ~ 9799796 (+)
G18491 NA other upstream 1528857 9739796 ~ 9749880 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 52000 11333741 ~ 11335825 (+)
G18949 NA other downstream 87152 11368893 ~ 11369752 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 491459 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 603914 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 745408 12027149 ~ 12049422 (+)

Expression


Co-expression Network