cpt1a2b (cpt1cb,LOC107730771,LOC107689673,LOC107548342,LOC106600940)


Basic Information

Item Value
gene id cpt1a2b
gene name cpt1cb,LOC107730771,LOC107689673,LOC107548342,LOC106600940
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11924369 ~ 11948555 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235310.1
CATAACCTCAGGTATGTGTTGCTTTCTGGAAGTGAAAGGGTGGAGATCACCTGAAAGTTTACATCTGTCAAAAACCGCATTCAGTCTTTAACTTGTTCCCGAACTACCATTCAGATTTACAGACAGCGCCTCATATAGTTTGTGTCTATAGTGATGGCAGAGGCTCACCAGGCAGTAGCGTTTCAATTCACAATCACTCCTGAGGGCATCGACCTACATCTCTCCTACCAAGCCCTTAATCAAATCTACCTCTCCGGACTGAGATCCTGGAAGAAACGCATCAGCAGGATTAAGAACAGAATCATTAAAGGCGTATACCCAGCTAGCCCATCCTCTTGGCTTTTTGTTGTAATAGCAATCCTGGCAACTATCTACATGCAGTCTGATCCATCTATGGGCCTCATTGCTAAGATTCAGGAGCACCTGCCCCTCAGTCTGTCATTGAGTGCTCAAGGCCAGACTGTGCTGTCGGTGCTGTTGTTCAGTACTCTGCTGTGGATGTCTCTCATTCTGGCTCTGAGGTTCTGCCTAAAACTTCTCCTATCATACCACCGATGGATGTTCGAGCAACATGGACGCATTTCTACCAAGACCAAAGTCTGGGCGACCCTAGTTAGGTTGCTGTCTGGTAGAAAGCCATTACTGTACAGCTATCAGACATCTTTACCACATCTGCCTGTACCTCCCATTAAAGAAACTTTGGAAAGAtaTCTGGAGTCAGTGAAACCACTGCTTGATACGGCTGGTTTTCAGCGAATGACAAGACTGGCTGCTGAGTTTGAGAAAAGTCTGGGTAACCGGCTACAAAAATACCTCAAACTTAAAGCGCTGTGGGCCACAAACTATGTTAGCGACTGGTGGGAAGAGTATGTTTATCTGCGGAGCCGGGGTCCCATTATGGTCAACAGTAATTATTATGGCATGGATTTCCTGTATGTGTCACCAACGACTAATCAGGCAGCTCGAGCTGGGAATACCATCACAGCCCTGTTTCTGTATCGCCGCAAAGTCAATAGAGAGGAGCTCAATCCTAGTCGTATTCCTGGTACAGTCATACCGCTGTGTGCAGCTCAGTGTGAGCGCATGTTCAACACCACGCGCACGCCGGGAGAGGAGactgATGTCCTGCAGCATTGGCAGGACAGTGAATTTGTGGCCGTGTACCACCGGGGCCGGTATTTCAGATTATGGGTTTACCGAGCAGGACGCCTGCTGTCACCCAGAGAGATCCAGTACCAGATTCAAAGGATCTTGGACGAACCCTCACCTCCTTCTCCAGGAGAGGACAAACTAGGGGCACTGACAGCAGGAAACAGGAAACCCTGGGCTCAGGTGAGAAAGCAGTTCTTCAGCTCTGGAGTGAACAAGCGCTCACTAGACTGCATTGAGAAAGCAGCCTTCTTTGTCACGCTAGATGATCAGGAAGAAGGTATGATGGGGGAAGATCCCTCTGGGAACTTGGACCGCTATGCCAAATCCCTCCTTCACGGAAAGTGCTATGACAGATGGTTTGATAAGTCGTTTTCTGTTGTGGTGTATAAGAATGGAAAGAAcgggttaaatgcagagcattCTTGGGCTGATGCTCCTATAGTGGCTCATCTGTGGGAGTTCACTCTGGCCACAGACACATTTCTTTTGGGTTACACGGCAGACGGGAACTGCAGGGGAGAGATTGAGCGCTCCTTACCACCTCCTCAACGCTTGAACTGGGACATACCACTGGAGGTCCAGACACAGGTGTCCGAATCTCTCGCTGTTGCGCAAGCACTTGCTGATGATGTGGACTGTCATGTATTTCCATTCAAAGAATTTGGGAAAGGCCGGatcaagaaaatgaaaatgagtccAGATTCCTTTGTGCAGCTGGCCCTTCAGCTGGCCTACTACAGGGACAGAGGGACTTTCTGTCTGACATATGAAGCCTCTATGACTCGTTTGTTTCGTGAGGGTCGCACTGAGACCGTCAGATCCTGTTCCAGTGAAAGCTGCATCTTTGTCCATGCACTGGAAGCAGGAGAGgATGAAGAACACTGTCGTCTGCTTTTTCGAAAGGCTGCTGAGAAGCATCAGAACCTCTACCGCCTGGCGATGACTGGATCTGGTATTGACAGGCACCTCTTCTGCCTGTATGTGCTCTCAAAATACCTGGGGGTAGATTCTCCTTTCCTTAAAGAGGTGTTGTCAGAGCCCTGGCGCCTCTCCACCTCTCAAACTCCTGTGCAACAGATGGAGTTATTTGATTTGGTGAACCACCCTGAGTTCATCTCGCTGGGAGGAGGCTTTGGTCCAGTGGCTGATGATGGCTATGGCGTATCTTACATCATTATGGGCGAGGAAATGATCAACTTCCACGTGTCCTGCAAGCATTCCTGCAAAGAGACTGACTCTCATAAATTTGGCTCTCAGATTAGTCAATCCATGATGGATCTTATGACTCTGCTCAACCCTGACTTCAAGGAAGCCACAAAAGTCAACCCTGTCAAACAGTCATAAATCCTGCTGTGTGCTTGTATAAAGATGGGTTTACGTATATCattgtttgtgcttttttatttaattctcttCTGTTTGTTGGGTTTGAATTTGTAATATAGTGGATCTGTACCAGTGTCAATACTGAAAGTAATTTGTAGAGTTTCTGGTTTTGCTAATTGCTGCTGGAGCAGTTTTGCTGTATACCTgtcataaatcacaaaaaaaatgttccctGAGAAATTACATTTGTCTGTCTGACATCTCTGTGAATAGTGAACATATGTCCAGCCAGTCAACTATTGTGTGCGACATCTTATTTTGTCTTTACAGGGTATTGGTATGAAGAGAGGCTCTGTGGCTAAAaccactatttaaaaaaactttctttttttttttgctgatacagaggaaaacaaaaatgttctcCCTAAAACATATTTCACCCATTAAAATCAGTTATGATTTGAa

Function

NR:

description
PREDICTED: carnitine O-palmitoyltransferase 1, liver isoform-like

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K08765 CPT1A; carnitine O-palmitoyltransferase 1, liver isoform

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235310.1 True 2946 mRNA 0.46 19 11924369 11948555

Neighbor

gene id symbol gene type direction distance location
pih1d1 LOC107583023,LOC107658482,LOC107729529,LOC107730744,LOC107548339 coding downstream 16576 11901129 ~ 11907793 (-)
tnnt1 tnnt1,LOC107583024,LOC107729530 coding downstream 23642 11893395 ~ 11900727 (-)
baxb LOC107729453,LOC107658432,LOC107729452,LOC107548291,LOC107693506,LOC107730775,LOC107548334 coding downstream 80759 11837643 ~ 11843610 (-)
LOC122338209 NA coding downstream 87674 11834377 ~ 11836695 (-)
rnf113a rnf113a,LOC107693494,LOC107658472,LOC107729443 coding downstream 170789 11750228 ~ 11753580 (-)
brsk1b LOC107658484,LOC107548343,LOC108427376,LOC108274928 coding upstream 555 11949110 ~ 11965948 (-)
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671 coding upstream 40547 11989102 ~ 11993163 (-)
si:ch211-195b15.7 si:ch211-195b15.7,LOC107658491,LOC107689666,LOC107554103,LOC107730731 coding upstream 100902 12049457 ~ 12059549 (-)
rcn3 rcn3,LOC107729515,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding upstream 154387 12102942 ~ 12106684 (-)
tspan4b tspan4b,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108427360,LOC107583081 coding upstream 178455 12127010 ~ 12131799 (-)
G19385 NA non-coding downstream 52463 11867007 ~ 11871906 (-)
G19381 NA non-coding downstream 80170 11844014 ~ 11844199 (-)
G19375 NA non-coding downstream 152721 11769722 ~ 11771648 (-)
G19117 NA non-coding downstream 513653 11410335 ~ 11410716 (-)
G19108 NA non-coding downstream 588569 11333756 ~ 11335800 (-)
LOC122330904 NA non-coding upstream 20039 11968594 ~ 11975569 (-)
G19422 NA non-coding upstream 71028 12019583 ~ 12023427 (-)
G19427 NA non-coding upstream 77809 12026364 ~ 12026940 (-)
G19436 NA non-coding upstream 96094 12044649 ~ 12045400 (-)
G19453 LOC107583009,LOC107729419,LOC107658421,LOC107730751,LOC107554101,LOC107689664 non-coding upstream 136774 12085329 ~ 12086221 (-)
LOC122341756 NA other downstream 3602 11909775 ~ 11920767 (-)
G19383 NA other downstream 43410 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 196368 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 209650 11694272 ~ 11714719 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 495190 11411985 ~ 11429179 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 390632 12339187 ~ 12343872 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 674228 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 733435 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 1057441 13005996 ~ 13068190 (-)
G19700 NA other upstream 1098486 13047041 ~ 13047494 (-)

Expression


Co-expression Network