thoc6 (thoc6,LOC107729483,LOC107583000,LOC107689651,LOC107730738)


Basic Information

Item Value
gene id thoc6
gene name thoc6,LOC107729483,LOC107583000,LOC107689651,LOC107730738
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12159182 ~ 12162641 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235314.1
TCTTGTCTGTGGGGGCAGGTTGTGTATTGCGTCATATTTACGCGACTCTGTTTGAAAGAGCGGCACGAACAGGCTTTGTATGGGAATTAGCCGAAGATTTTCcaagttaaattaataatttaataaactcCAGGAGCATGGGTCCAGTTGAGCTGCTGCATATGTCCGTGTTCTCTCAGAGTTTCTCTCCATGTGGTCGTTTCCTTGCAGCGGGTAACAACTATGGAGAGATCGCGGTGTTCAGTCTTTCAGCTGCACTGAGTCCAGATGCTTCAGAGGGCAGCCAGAAGCCCATCCTTAACTTCACTGCTCACGATGGTCCGGTGTTCACTCTTCTCTCCACGGACACTCATCTCCTGAGTGCTGGGAACGGAGAGATCAGTGCCTGGAGCTGGGCAGAGCTAATCAAAAAAAGCACCAAAGCTGCATGGACAAGAAAACCCAGTTATGAGACTAGTCTTGAAATACCAGAGATCAATGCAATGATCATTAACCCAAGGGACAACAGCTTGGTAGTTGGAGGAGGTGACAATAACATTCACATCATGGACATGGAGACTGGCATCTTTAAGTCTGCACTAAAAGGCCACACCGACTACATCCACTGCCTGTGCTTTAAAGAAAGGGAAGGGGAGATCCTCTCTGGTGGGGAAGATGGTGCTGTGAGGATATGGGACTCCCGAACAAATCGCCCAGTTCACTGTATTGAAGTTTTCAAATATGAGGAATGCGCACGCCCCCAGTATGGGAAGTGGATAAGCTGTCTTGCTACGGACTCTGATTGGATGCTCTGTGGTGGAGGCCCATCGCTCTCATTATGGCACCTCCGTTCCATGTCCCCCACCTCTGTGTTCCCTTTGCCCGGCTGTCAAAGGGAAGCTGTCTTTCACCAGGACCTGATCATGTCAGTAGGCGAGGGGCCGTATGTGTCCCACTGTTTACATGGAGGGACAGTGAAAGCTCAGATTCCCTGCACTCCTTCCTCACTCAACACAATGGCTCTCAATCTCAAAAACACTGAACACAGGGTTATGACAGTAGGGGGCAGCAGTCATCAAATTGATGTGTTTACCAACTTCAGTTACAGAGCCTTTTCTCTGTCATTTTGAGTACCTCAACATTTGTTTGAATCTGAAATCTGTGGCAAATTTTTAAATTGCGACTTgctaaaatgaaactaaacaatgtatttttttataataaacttttttggGTTATTGTTCACTGTTTTTTCAATGTGAGTTTTAGCTTTACATTTGAATCGTGCATTTTAGtctgaaaatgattttgaaggTGCATTTGGTTgtggtttttttgtgtgtgtgtgaaatactagtaaaatacacaaagtaTAATATTA

Function

symbol description
thoc6 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing; apoptotic process; and mRNA transport. Predicted to be located in nuclear speck. Orthologous to human THOC6 (THO complex 6).

NR:

description
THO complex subunit 6 homolog

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006397 mRNA processing biological_process
GO:0007275 multicellular organism development biological_process
GO:0051028 mRNA transport biological_process
GO:0008380 RNA splicing biological_process
GO:0016607 nuclear speck cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13175 THOC6; THO complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235314.1 True 1360 mRNA 0.45 13 12159182 12162641

Neighbor

gene id symbol gene type direction distance location
srrm2 LOC107729482,LOC107583001,LOC107554117,LOC107689653,LOC107730748 coding upstream 581 12149797 ~ 12158601 (+)
mmp25a LOC107730750,LOC107689654,LOC107729415,LOC107658423,LOC107554116 coding upstream 10051 12145111 ~ 12149131 (+)
unc119.2 LOC107658437,LOC107689658,LOC107730769,LOC107583101,LOC107729484 coding upstream 15295 12141301 ~ 12143887 (+)
bcl2l12 LOC107689657,LOC107658496,LOC107554114,LOC107583005,LOC107729416 coding upstream 32076 12120674 ~ 12127106 (+)
LOC122342107 nosip,LOC107583007,LOC107658495,LOC107729514,LOC107730754,LOC107554107 coding upstream 56250 12098906 ~ 12102932 (+)
si:dkey-16l2.16 si:dkey-16l2.16,LOC107729502,LOC107554119,LOC107658507,LOC107730777,LOC108427354,LOC108280555 coding downstream 969 12163610 ~ 12168731 (+)
rnf25 rnf25,LOC107729499,LOC107658504,LOC107582997,LOC107689710,LOC107554089 coding downstream 6240 12168881 ~ 12173874 (+)
kat8 kat8,LOC107582998,LOC107658503,LOC107729500,LOC107689650,LOC107554120 coding downstream 11635 12174276 ~ 12177729 (+)
si:dkey-16l2.17 si:dkey-16l2.17,LOC107582999,LOC107729501,LOC107658439,LOC107737763,LOC107689709,LOC107554090 coding downstream 16582 12179223 ~ 12182498 (+)
fus fus,LOC107658502,LOC107554122,LOC103040960 coding downstream 20610 12183251 ~ 12192143 (+)
G19274 NA non-coding upstream 24225 12132629 ~ 12134957 (+)
G19263 NA non-coding upstream 40407 12118538 ~ 12118775 (+)
G19257 NA non-coding upstream 84679 12074231 ~ 12074503 (+)
G19255 NA non-coding upstream 86109 12072719 ~ 12073073 (+)
G19208 NA non-coding upstream 185176 11967648 ~ 11974006 (+)
G19287 NA non-coding downstream 65294 12227935 ~ 12228520 (+)
G19579 NA non-coding downstream 518617 12681258 ~ 12681565 (+)
G19575 LOC107690704 non-coding downstream 520177 12682818 ~ 12686371 (+)
G19656 NA non-coding downstream 834576 12997217 ~ 13056733 (+)
G19629 ighv4-5 non-coding downstream 843169 13005810 ~ 13096854 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other upstream 41243 12114048 ~ 12117939 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other upstream 58330 12092603 ~ 12100852 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other upstream 109760 12027149 ~ 12049422 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other upstream 265526 11885655 ~ 11893656 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other upstream 325258 11773200 ~ 11833924 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other downstream 69786 12232427 ~ 12249997 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other downstream 140723 12303364 ~ 12315046 (+)
G19326 NA other downstream 349285 12511926 ~ 12513721 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other downstream 357196 12519837 ~ 12528803 (+)
LOC122332158 LOC107583070,LOC107737766 other downstream 672740 12835381 ~ 12987913 (+)

Expression


Co-expression Network