pvalb1 (pvalb1,LOC107713958,LOC107565876,LOC108279005,LOC107691228,LOC108412819,LOC107665844)


Basic Information

Item Value
gene id pvalb1
gene name pvalb1,LOC107713958,LOC107565876,LOC108279005,LOC107691228,LOC108412819,LOC107665844
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 26547774 ~ 26551456 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235322.1
TAGACCCACACGAGGTATCCGTTACTGGGCTTCAAATTCCTGCAAACGGTGAGGCTGAGGGTATATAAGCCGGGACCTCCAGAAGCCCAGCTCACACCTCGACTAACTCCTCCGGTTTTTCACTCGCCTTAGACAAGCGCAAGCTTCATCAGAACCAGAACAATGGCCGTCGCTGCTATGCTCGCCGCCGCTGATGTGGATGCTGCTCTCGCCGCCTGCCAGGCTGCCGACTCTTTCGAGTACAAGGCTTTCTTCGCCAAGGTCGGCCTGTCCGCCAAGTCCGCCGATGAGGTCAAGAAGGCTTTCGCCATCATTGACCAGGACAACAGCGGCTTCATTGAGGAGGAGGAGCTGAAGCTGTTCCTGCAGAACTTCAAGGCCAGCGCCAGGGCTCTGACCGACAAAGAGACCAAGGCCTTCCTGTCTGCTGGTGACAGCGATGGTGATGGCAAGATTGGAGCTGAAGAGTTTGCTGCTCTTGTAAAGGCTTAAATTTTCATCCGACCAAGACCCTTCCAATACCAAGGAACCAGAACTCACGACAGCTCACACCTTTCTCAGccgaactttttttttatacgatCTTATTTATGACTGACTTTGGACAGTTGACTCAGTTTTGAGTACAGCGTCTGGATGAGGGTACTGTTTGTGTTAGTTGGATGTTGTATTTCAAGCCCATTGGCTTGTGCACATGTACTATCTTGAATGCACTTCTGGGGAAGAGTGAAAAACAAGGAATAAATATAGTTTTGGTGTAA

Function

symbol description
pvalb1 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in musculature system and myotome.

NR:

description
parvalbumin beta 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235322.1 True 761 mRNA 0.50 5 26547774 26551456

Neighbor

gene id symbol gene type direction distance location
pvalb5 pvalb5,LOC107691230,LOC107724738,LOC107713944,LOC107548707,LOC107666047 coding upstream 1269 26541968 ~ 26546505 (+)
tecpr1b LOC107665885,LOC107724727 coding upstream 32228 26500010 ~ 26515546 (+)
LOC122341701 baiap2l1b,LOC107665916,LOC107548703,LOC107691223,LOC107713954,LOC107724726 coding upstream 56057 26457623 ~ 26491717 (+)
nptx2a nptx2a,LOC107665931,LOC107724745,LOC107713953,LOC107691222 coding upstream 169363 26364279 ~ 26378411 (+)
LOC122341389 NA coding upstream 188961 26358256 ~ 26358813 (+)
pvalb4 pvalb4,LOC100305042,LOC107724737,LOC107665849,LOC107548706,LOC107565875 coding downstream 1424 26552880 ~ 26554257 (+)
pvalb8 pvalb8,LOC107724728,LOC107666119,LOC107548708,LOC107691229,LOC107666113,LOC103469263 coding downstream 3445 26554901 ~ 26559546 (+)
aimp2 aimp2,LOC107724742,LOC107691232,LOC107665836,LOC107713960,LOC107565874 coding downstream 16679 26568135 ~ 26572744 (+)
cacng4b cacng4b,LOC107691234,LOC107565862,LOC107713946,LOC107548710,LOC107724746,LOC107665825,LOC108412836 coding downstream 26774 26578230 ~ 26590164 (+)
cacng1b cacng1b,cacng1,LOC107666105,LOC107724731,LOC107691235,LOC108412846 coding downstream 44823 26596279 ~ 26606578 (+)
G23552 NA non-coding upstream 49807 26492946 ~ 26497967 (+)
G23550 LOC107691223,LOC107724726,LOC107713954,LOC107548703,LOC107665916 non-coding upstream 111926 26428219 ~ 26435848 (+)
G23508 NA non-coding upstream 355932 26179232 ~ 26191842 (+)
G23189 NA non-coding upstream 413944 26131602 ~ 26133830 (+)
G23176 NA non-coding upstream 475085 26059352 ~ 26072689 (+)
G23594 helz,LOC107665819,LOC107691233,LOC107565856 non-coding downstream 93815 26645271 ~ 26646452 (+)
G23659 NA non-coding downstream 171356 26722812 ~ 26723027 (+)
G23664 LOC107548683,LOC107666079,LOC107654573,LOC107752704,LOC107743002 non-coding downstream 177352 26728808 ~ 26729365 (+)
G23692 NA non-coding downstream 273652 26825108 ~ 26834795 (+)
LOC122341893 NA non-coding downstream 278430 26829886 ~ 26834669 (+)
LOC122341778 gid4,LOC107724729,LOC107555661,LOC107713949,LOC107559524,LOC106601817,LOC101065567 other upstream 595027 25948054 ~ 25952747 (+)
LOC122341383 tom1l2 other upstream 636149 25894590 ~ 25911625 (+)
G23146 NA other upstream 697198 25837143 ~ 25850576 (+)
LOC122341783 arl16,LOC107583744 other upstream 713576 25832505 ~ 25834198 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other upstream 885457 25661048 ~ 25662317 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other downstream 99373 26650829 ~ 26705731 (+)
ubald2 ubald2,LOC107548684 other downstream 207607 26759063 ~ 26772903 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other downstream 246975 26798431 ~ 26801401 (+)
G23695 NA other downstream 295267 26846723 ~ 26847357 (+)
LOC122335546 NA other downstream 730371 27281827 ~ 27282406 (+)

Expression


Co-expression Network