LOC122341749 (LOC107687002)


Basic Information

Item Value
gene id LOC122341749
gene name LOC107687002
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19443220 ~ 19445897 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235342.1
ATTTAAAGAGCGCACAGCAGCCACTAACGAAACTGAGCTGAACAGGAGCGGTCTGTAAAGAGAGCAACAAACAGTCTGACCAGACTTTTTCATCACTTGTTAATAACCTACTCTACgTTCCTTCTAAGCAAGCATGTCATCTGCAAAAGGAGTTGCTATTGGGATTGACCTGGGCACCACTTACTCCTGTGTGGGGGTGTTTCAGCATGGAAAAGTGGAGATCATCGCCAATGACCAGGGAAACAGAACAACACCCAGCTACGTTGCCTTCACAGACACCGAGAGGCTCATCGGAGACGCAGCTAAAAACCAGGTGGCCATGAACCCCAACAACACCGTGTTTGACGCCAAGAGGCTGATCGGCAGAAAGTTTGACGACCCAGTTGTTCAGTCCGACATGAAGCACTGGTCCTTCCAAGTTGTCAGCGATGGAGGAAAGCCTAAGGTGCAGGTTGAGTACAAAGGAGAAAACAAGACATTCTACCCTGAAGAGATCTCCTCCATGGTCCTGGTGAAGATGAAGGAGATTGCTGAGGCTTATCTGGGGCAGAAGGTGACAAATGCAGTCATCACAGTTCCTGCCTATTTCAACGACTCCCAGAGGCAAGCGACTAAAGACGCTGGAGTAATCGCTGGACTGAATGTCCTGAGAATCATCAACGAGCCCACGGCTGCAGCCATTGCCTACGGCCTTGACAAAGGCAAATCTTCAGAGCGCAACGTCCTGATCTTCGACCTGGGAGGAGGCACCTTTGACGTGTCCATCCTGACCATTGAAGATGGCATCTTTGAGGTGAAGGCCACGGCTGGAGACACACATCTGGGTGGAGAGGACTTTGACAATCGCATGGTGAATCACTTTGTTGAAGAATTCAAGAGGAAGCACAAGAAGGACATCAGTCAGAACaagagggccctgaggaggctGCGGACAGCATGTGAGCGAGCCAAGAGGACTCTCTCTTCCAGCTCTCAGGCCAGCATCGAGATCGACTCGCTGTACGAGGGCATCGACTTCTACACGTCCATCACCAGAGCGCGCTTTGAAGAGATGTGCTCAGACCTCTTCAGAGGAACACTTGAACCTGTGGAAAAAGCCCTGAGAGACGCCAAGATGGACAAGTCTCAGATCAATGACATTGTGTTGGTTGGAGGATCAACAAGAATCCCAAAGATCCAGAAGCTTCTGCAGGATTTCTTCAACGGCAGAGACTTGAACAAGAGCATCAACCCAGACGAGGCAGTGGCTTACGGTGCTGCGGTTCAAGCCGCCATCCTGACGGGAGACACATCTGGAAACGTCCAGgacctgctgctgctggacGTGGCTCCACTGTCCCTGGGCATCGAGACAGCAGGAGGAGTCATGACGGCCCTCATCAAACGCAACACCACCATCCCCACCAAACAGACCCAGACCTTCACCACCTACTCAGACAACCAGCCCGGCGTCCTGATCCAAGTCTTTGAGGGAGAGAGGGCCATGACCAAGGACAACAACCTGCTGGGTAAATTTGAGCTGACAGGAATCCCACCTGCTCCACGTGGAGTCCCGCAGATCGAAGTGACCTTTGACATCGACGCCAACGGAATCCTAAATGTGTCCGCGGTGGATAAAAGCACTGGAAAAGAGAACAAGATCACCATCACCAACGACAAGGGCAGACTGAGTAAAGAGGACATTGAGAGGATGGTGCAGGACGCAGACAAGTACAAAGCTGAAGATGATCTGCAAAGAGAGAAGATCGCTGCCAAAAACTCTCTGGAGTCTTACGCCTTCAACATGAAGAACAGCGTGGAAGATGAGAACCTGAAAGGAAAGATCGGTGAGGACGACAAGAAGAAAGTTATTGAGAAATGTAACGAGGCCATCAGCTGGCTAGAAAACAACCAGCTGGCTGATAAAGAGGAGTACGAACATCACCTGAAGGAGCTGGAGAAGGTCTGCAACCCGATCATCACTAAACTGTATCAGGGAGGGATGCCCGCTGGAGGCTGTGGAGCTCAGGCACGTGAAGCATCAGGGGCCGGTGCTCAGGGGCCCACTATCGAGGAGGTGGATTAAAATGCCTCAGGAATGGAATGGTCCAGGGACTCAtaagacactttttttattcaatcatTACACATTATACTAGTTTACTCCATTTTGCTACCGTTAAACTTGACATTACTTAGTAAATGTTTTAACTTATAAAATAAGTTTGATATTGTCTGAGAtgagattttaaattatttatcattCATGTTTTTACTGCGATTATTACGAATGTTAtgaaactgtaaataaaactttatattttaaa

Function

NR:

description
PREDICTED: heat shock 70 kDa protein

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0009408 response to heat biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235342.1 True 2306 mRNA 0.49 2 19443220 19445897

Neighbor

gene id symbol gene type direction distance location
rabep2 LOC107690284,LOC107567756,LOC107755579,LOC107729174,LOC107687001 coding upstream 25329 19409591 ~ 19417891 (+)
si:ch211-11k18.4 si:ch211-11k18.4,ehd3,LOC107567764,LOC107755580,LOC107690281,LOC107590563,LOC107687000,LOC108411040 coding upstream 34536 19403562 ~ 19408684 (+)
gdpd3a gdpd3a,LOC107590565,LOC107686997,LOC107729175,LOC107755582 coding upstream 43948 19394731 ~ 19399272 (+)
mapk3 mapk3,LOC107686994,LOC108411041,LOC107567791,LOC107690275,LOC108256206 coding upstream 50022 19385022 ~ 19393198 (+)
ppp4ca ppp4c,LOC107729194,LOC107755586,LOC107690278,LOC107590569,LOC107567834 coding upstream 62591 19376975 ~ 19380629 (+)
hsd17b1 hsd17b1 coding downstream 1274 19447171 ~ 19449662 (+)
si:ch73-141c7.1 si:ch73-141c7.1,LOC107567723,LOC107590559,LOC107687003,LOC107729197,LOC107690287 coding downstream 5514 19451411 ~ 19454315 (+)
nkiras2 nkiras2,LOC107755561,LOC107590605,LOC107687022,LOC107729182 coding downstream 63191 19509088 ~ 19511507 (+)
aspdh aspdh,LOC107754162,LOC107731187 coding downstream 471773 19917670 ~ 19921271 (+)
pold1 pold1,LOC107754155,LOC107653418,LOC107731044 coding downstream 484836 19930733 ~ 19941580 (+)
G21239 LOC107687002 non-coding upstream 2574 19438007 ~ 19440646 (+)
G21215 NA non-coding upstream 138162 19304852 ~ 19305058 (+)
G21151 NA non-coding upstream 155571 19258917 ~ 19287649 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding upstream 588677 18854109 ~ 18854543 (+)
G21180 NA non-coding upstream 739537 18702584 ~ 18703683 (+)
LOC122341657 NA non-coding downstream 9529 19455426 ~ 19459635 (+)
G21269 aclya,LOC107687019,LOC107729187,LOC107590593,LOC107755575,LOC107567706,LOC107690323 non-coding downstream 25102 19470999 ~ 19472687 (+)
G21246 NA non-coding downstream 37604 19483501 ~ 19484384 (+)
G21275 NA non-coding downstream 43876 19489773 ~ 19490022 (+)
G21276 NA non-coding downstream 44232 19490129 ~ 19490595 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 40044 19399408 ~ 19403176 (+)
G21213 NA other upstream 150879 19291445 ~ 19292341 (+)
G21202 NA other upstream 449986 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 567093 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 601460 18828665 ~ 18841760 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 618373 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 648954 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 739638 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 1436301 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1849805 21295702 ~ 21414286 (+)

Expression


Co-expression Network