hsd17b1 (hsd17b1)


Basic Information

Item Value
gene id hsd17b1
gene name hsd17b1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19447171 ~ 19449662 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235344.1
ATGGAGCAAAAAGTTGTTCTCATTACTGGATGCTCTTCGGGGATTGGACTCAGCCTGGCTGTGTATCTCGCATCAAACCCGACAAAAGCCtacaaagTCTACGCTACCATGCGTAACCTGGACAAGAAGCGGCGGCTGTTGGAGAGTGTGAGGGGACTGCATAAAGACACTATGGCCATACTTCAGATGGATGTGACAGACCAGCAATCTATACTTGATGCtaagaaaaacattacagaGGGCAGAATTGATATACTAGTTTGTAATGCAGGTGTAGGTCTGATGGGTCCTCTGGAAGCCCACTCACTGGACACTATACATGCAATCCTGGACGTCAATCTGCTGGGCACCCTCCGCACCATACAAACCTTCCTACcagacatgaagaaaaagagacaTGGACGAATCCTTGTGACCGGCAGCATGGGAGGACTTCAAGGACTACCATTCAATGAGGTCTACTGTGCTAGCAAATTTGCAGTAGAGGGTGCTTGTGAGAGCCTGGCTATACTGCTCCAGCACTTCAATATCCATGTGAGCCTGATTGAATGCGGACCAGTCAATACAGACTTCCTGATGAACCTGAAGAGGACGGAGCCCAGCGACGAAGCGCTGGAAGTTGACGCGCACACACGCAGCCTGTATGATCAGTACCTGCAGCACTGCCAGTCTGTGTTCCAGAACGCCGCTCAGGACACCGAGGACATCATACAGGTGTATATGGAGGCAATCGAAGCCCAAACTCCATTCCTCAGATATTACACTAACAGAGCCCTGCTACCCATGAGCAGCCTCAAACTCTCCTCCATGGATGGCTCTCAGTACATCCGAGCAATGAGCAAGCTCATCTTTTCTGAACCCAAAACAGATCCACAGATGTGATGAGATTCTTTTCATGAGCCCTAAAGTATGCAACACactatatttacagtttaaaagcttTTGACTGTACTGCAGTGTTTCCACTTCCACTTTCATACTACTTATGTGATTTGTACAACA

Function

symbol description
hsd17b1 Enables estradiol 17-beta-dehydrogenase activity. Acts upstream of or within androgen metabolic process and estrogen biosynthetic process. Predicted to be located in cytoplasm. Is expressed in brain and gonad. Orthologous to human HSD17B1 (hydroxysteroid 17-beta dehydrogenase 1).

NR:

description
PREDICTED: estradiol 17-beta-dehydrogenase 1

GO:

id name namespace
GO:0008209 androgen metabolic process biological_process
GO:0006703 estrogen biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004303 estradiol 17-beta-dehydrogenase activity molecular_function
GO:0047035 testosterone dehydrogenase (NAD+) activity molecular_function

KEGG:

id description
K00044 HSD17B1; 17beta-estradiol 17-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235344.1 True 1002 mRNA 0.48 6 19447171 19449662

Neighbor

gene id symbol gene type direction distance location
LOC122341749 LOC107687002 coding upstream 1274 19443220 ~ 19445897 (+)
rabep2 LOC107690284,LOC107567756,LOC107755579,LOC107729174,LOC107687001 coding upstream 29280 19409591 ~ 19417891 (+)
si:ch211-11k18.4 si:ch211-11k18.4,ehd3,LOC107567764,LOC107755580,LOC107690281,LOC107590563,LOC107687000,LOC108411040 coding upstream 38487 19403562 ~ 19408684 (+)
gdpd3a gdpd3a,LOC107590565,LOC107686997,LOC107729175,LOC107755582 coding upstream 47899 19394731 ~ 19399272 (+)
mapk3 mapk3,LOC107686994,LOC108411041,LOC107567791,LOC107690275,LOC108256206 coding upstream 53973 19385022 ~ 19393198 (+)
si:ch73-141c7.1 si:ch73-141c7.1,LOC107567723,LOC107590559,LOC107687003,LOC107729197,LOC107690287 coding downstream 1749 19451411 ~ 19454315 (+)
nkiras2 nkiras2,LOC107755561,LOC107590605,LOC107687022,LOC107729182 coding downstream 59426 19509088 ~ 19511507 (+)
aspdh aspdh,LOC107754162,LOC107731187 coding downstream 468008 19917670 ~ 19921271 (+)
pold1 pold1,LOC107754155,LOC107653418,LOC107731044 coding downstream 481071 19930733 ~ 19941580 (+)
LOC122341334 LOC107754194,LOC107568235,LOC107690309 coding downstream 537844 19987506 ~ 19998472 (+)
G21239 LOC107687002 non-coding upstream 6525 19438007 ~ 19440646 (+)
G21215 NA non-coding upstream 142113 19304852 ~ 19305058 (+)
G21151 NA non-coding upstream 159522 19258917 ~ 19287649 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding upstream 592628 18854109 ~ 18854543 (+)
G21180 NA non-coding upstream 743488 18702584 ~ 18703683 (+)
LOC122341657 NA non-coding downstream 5764 19455426 ~ 19459635 (+)
G21269 aclya,LOC107687019,LOC107729187,LOC107590593,LOC107755575,LOC107567706,LOC107690323 non-coding downstream 21337 19470999 ~ 19472687 (+)
G21246 NA non-coding downstream 33839 19483501 ~ 19484384 (+)
G21275 NA non-coding downstream 40111 19489773 ~ 19490022 (+)
G21276 NA non-coding downstream 40467 19490129 ~ 19490595 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 43995 19399408 ~ 19403176 (+)
G21213 NA other upstream 154830 19291445 ~ 19292341 (+)
G21202 NA other upstream 453937 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 571044 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 605411 18828665 ~ 18841760 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 614608 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 645189 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 735873 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 1432536 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1846040 21295702 ~ 21414286 (+)

Expression


Co-expression Network