samd1a (samd1a,LOC107728687,LOC107711202,LOC107661838,LOC107599303,LOC107670528,LOC107602714)


Basic Information

Item Value
gene id samd1a
gene name samd1a,LOC107728687,LOC107711202,LOC107661838,LOC107599303,LOC107670528,LOC107602714
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 6649673 ~ 6656616 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235360.1
TAACATGCATGCGCGCCAGTATCGCGTTCCAGAGCGGCAACAACGGCCATTTAAGCGGCGCGGAAACGTGCAGGCGAGCGGTGCCTCCTTAAATCTCCTAGCGGCGGGCCGCGCATCTCGCGCATTCCACCTTAAAAGCGCTCAACGCGATCAACGCACGCGTACAGTATGTTtccgttttttttctccttctccaGCGCGCTCGCGCCGCGGCTCGAAAGACTGCGAGCGTCACGTCGAAGGCAACACTGACGCACTTCATCCACTCTTATCAAGCTCGAAGCCCATTAGGAATAATGTCTGAGCCGTACCGCGAATGGATCCTGGGCTCCATAGACTCGCTGAGGTCGAGAAAAGCGCGACCGGACCTGGACAGAATTTGCAGGATGGTAAAAAGACGACACGGCTCGGATTGGGACCGAACCCGGTCAGAACTGGAGAAACTGATAGAGGAGCAAACGGTGCTCAAAGTCAACTATAAAGGCTCGGTTTCGTATCGCAACGCGGCAAAGGTGCTAAGAGGCAGGAGAAAAACCGAGCAGGGCAAGTGTGCTGTGAAACAGCCTTCTCTCGCGGACTGGAGCACCGGCGACAGCGCTCTGGGTCCCGTGGATGAGGATCACATGGAGGATATGGAAGACGAGATGTCCACCACCGCAGGAATGGACAGCAGTATGGACGAGGAGGGGGACGAGAGCAGTCTGGACGCCATGTGCGCTCAGAGCACCGCTGACTCGGGCATCAGCATGAGTCCCGTCACCAGCAGCAACACCAGTCAGCCCGTTCCCTCACCCGCGTCCTCAAAGAACTCCCCTACCCATGATGCTCTGAGGCAGGACGCCGACAGCGCTTACACTCTACCTGAGCACATGCAGCCAGCAGCACAGCAAGACACAGCCTCAGGATCCGTGGCGCTCGTGCGGCAGCCGGCAGCCATCTGTCCGTCCGCTCTTCAAGTGGAGGAGGGGCCGCTCGGCCCTGATCCGCTGATGTCTCACAGCGGCGTCACAGCGGACGAGACGCTGGTGTCAGACGCCGTGGCCGATCCTGTCCGGGAGGGCGACACGCGCACCAAGAGCACAACGGAGGAAGAAACCGCTAACGGCGACGGGGCGGATAACGGAAATGACGAGGTAAAGAAAGAAATCGGCCAGGACCCTTTGCTCTGGAGCGTGGCCGATGTGGCCAGTTACTTCACGTCTGCGGGCTTCCCCGAGCAGGCGCTGGCTTTCAGGACGCAGGAAATAGATGGGAAGTCCTTGCTGCTGATGCAGCGCAGTGACGTGTTGACCGGCCTGTCCATCAGACTCGGCCCTGCTCTGAAGATCTACGAGAATCACGTGAAGGTGCTGCAGAGAAGCCACTTTCAGGACGACAGCCGTCTCTTCTCGTAGTGCTCGTGTTTTCAGCGAAAACGGACTGAAATTCCCCCCGGCCACGAAAGGAGGGGAATAACGTTAACTCTTTAAGACTTGATTTGCACAATCCTCCTCAGCTTATCTTCTCTTCTTCAGCGCGAGGACATGCCGCATGATTCAGCCCTGCAGTCTGTTCTTCTGTTGTGAGTGCGtccttccatccatccgtcGAAGGGCTGACGGGACCATTcgttttaaaagtgttttgcgtttcgttttttttttttctacggTGGAGCTTTTTATTCACCGGTGTTTCGTcctactgttttgtttttttttttgtcagaaatgATTTACGGTGTcgcaatattatataaacattgttCTTGTCCAATTAAATGTGCGATGTTCAGCGATGTTTTACAGCAGTCTTAAAATGGACCTGCAAATTTAGGAAATAAATTCCAGTTTCAGAATCTGAAA

Function

symbol description
samd1a Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAMD1 (sterile alpha motif domain containing 1).

NR:

description
PREDICTED: atherin-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235360.1 True 1844 mRNA 0.55 7 6649673 6656616

Neighbor

gene id symbol gene type direction distance location
prkacaa prkacaa,kapca,LOC107599301,LOC107602709,LOC107670487,LOC107661836,LOC108429687,LOC105910964,LOC107378291,LOC106606839,LOC103367163,LOC107728680 coding upstream 2772 6630997 ~ 6646901 (+)
asf1ba asf1ba,LOC107599302,LOC107661845,LOC107602710,LOC108429686,LOC107728681,LOC107670488,LOC103026007 coding upstream 19236 6626367 ~ 6630437 (+)
tubb4bl zgc:153426,LOC100712088,LOC103367161,LOC103468788,LOC107711200 coding upstream 31320 6614524 ~ 6618353 (+)
LOC122341485 LOC107711141,LOC107661867,LOC107711189,LOC107602696,LOC103910319,LOC107661842,LOC107602684 coding upstream 42004 6606688 ~ 6607669 (+)
LOC122341958 LOC107602696,LOC107711189,LOC107661842,LOC107711141,LOC107661867,LOC103910319,LOC103910320 coding upstream 50591 6584504 ~ 6599082 (+)
dnajb1a dnajb1a,LOC107711204,LOC107602716,LOC107670512,LOC107728686,LOC107599305,LOC108429690,LOC108257372 coding downstream 9361 6665977 ~ 6670009 (+)
gipc1 gipc1,LOC107670535,LOC107728688,LOC107599306,LOC107661840,LOC107602717,LOC107711205 coding downstream 13583 6670199 ~ 6678717 (+)
trim35-12 LOC107670464,LOC107602713,LOC107599344,LOC107728678,LOC107711176,LOC107661834 coding downstream 22565 6679181 ~ 6684198 (+)
dnm2a dnm2a,LOC107661823,LOC107602725 coding downstream 140170 6796786 ~ 6833224 (+)
tnfsf14 LOC107744984,LOC107661863,LOC107711150,LOC107602699 coding downstream 184403 6841019 ~ 6846641 (+)
G17630 NA non-coding upstream 24377 6623688 ~ 6625296 (+)
G17584 NA non-coding upstream 174054 6475099 ~ 6475619 (+)
G17560 LOC107693569,LOC107722887,LOC107673775,LOC107563216,LOC107599327,LOC107572241,LOC107693566,LOC107661871,LOC107661873,LOC107599328 non-coding upstream 212705 6436732 ~ 6436968 (+)
G17524 NA non-coding upstream 231310 6417662 ~ 6418363 (+)
G17528 LOC107693569,LOC107673775,LOC107661871,LOC107722887,LOC107563216,LOC107711138,LOC107572241,LOC107661873 non-coding upstream 295848 6346536 ~ 6353825 (+)
G17662 NA non-coding downstream 47798 6704414 ~ 6704702 (+)
G17663 NA non-coding downstream 48579 6705195 ~ 6705405 (+)
G17683 NA non-coding downstream 190322 6846938 ~ 6847606 (+)
G17699 NA non-coding downstream 246130 6902746 ~ 6903161 (+)
G17704 NA non-coding downstream 265580 6922196 ~ 6976265 (+)
G17590 NA other upstream 92923 6504915 ~ 6556750 (+)
LOC122341437 LOC107718607,LOC107653460 other upstream 454635 6186808 ~ 6195038 (+)
fbxw9 fbxw9,LOC107661857 other upstream 546047 6098201 ~ 6103626 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other upstream 686785 5957403 ~ 5962888 (+)
G17302 NA other upstream 1051441 5597099 ~ 5598232 (+)
LOC122331592 LOC107744988 other downstream 926738 7583354 ~ 7591526 (+)
baiap2a baiap2a,LOC107672452,LOC107711237,LOC107670476 other downstream 999415 7656031 ~ 7725519 (+)
slc27a1a slc27a1a,slc27a1,LOC107670527,LOC107757377,LOC107567246,LOC107711240,LOC107672489,LOC107587997 other downstream 1151627 7808243 ~ 7821078 (+)
LOC122341274 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494 other downstream 1182340 7838956 ~ 7841669 (+)
LOC122331768 LOC107710248 other downstream 1293145 7949761 ~ 7950417 (+)

Expression


Co-expression Network