LOC122341768 (coa1,LOC107600219,LOC108428892)


Basic Information

Item Value
gene id LOC122341768
gene name coa1,LOC107600219,LOC108428892
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4827437 ~ 4830481 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235366.1
TCTACAACGTGTTTCTTCGGATTAAACCCATCGCtgtttgaataaagtttttcaaatgaaaacaaacatggcCGCTTCCGTATCGCGTGTTATATAGCAAAGTCCCTTTGGTTTTtgcttatcaaaaaaaaaaataataatagatgtgACGAGTTTTCTTCCAGCCTAACAATATTTGCCCCATCTGAAGCAAGGATGAGCCGCTCCACCAGCCTCCTACAGCAGATGACCATATTCACGACCGTAGTGACCGGCGGCGGATGTGCTATGATGTATTACCTCATGCAGAAAAATTTCGCTAAATCAGAGCATTACCAACTTGCCCTTGAACAGCTGAACAATAATTCCACAGCCATGGCCAGTCTGGGTGCTCCTCCTCTGAAGATACACAACATCCATTTATCTGACCGACACAACCGCATTGACCACAGCAGCGCTCAGCTAAAGATCCCAGTTACCGGGTCAAAGAATGGAGGTTACCTTTACACAGCTTCCACCAGAGACGCTTTTATGAACAGGTGGCACCTCCAGCAAGTGTTTCTGAAGCTAAGGGAAGGCGAGATCATCGAGATTTTCAACAAGACAGAATCTGAAGAGTAACTTCACatagaaacatttcatttcatttgttaataaataatgtttggcGGCCTGATTTTTAACTAATGTGATTATGGCATTCACATATATTTATctactttaaatgttaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtttcatgtGAAGCACTTTATTTTGGGGCTAGCTTggaaaaaagtgtttcattaaGGATGGGTGATGTATAAATCCTAcactgtaattttgttttgttatcttATTATTAAGCATGTCttttttcacacacatgcataaacataaacaatcttactacattaaatatatacagttggCATAAAGCTTTTAAAGCTGATCTAAACATGATGTGGAAGCAGGGTCACATAAATTCAAGTGAGTCAAGAGATAATAACCTTGATCTGTCTGATTTTCTAccttaaaatgtgtataaaaaagGCAATTCATTACAGCTTGTAATACCAACACTGGGGTCTTTGGATCATCTGTTATGCCATTGTGACTGGTCTTGTGTCATTGTAGTTACTAAACTTCACCAGTAGGTGTCATTAAAAGATTATTATTCAGTAACCCAAGAAATTTGAATCATGTATTtctcaattaataaataaagccgATGATTTAATTTAGTGAAAGATACAAAATCAGGTTTATGTAGTGCTGTAAGGTGTGATTAAGTTAGATTTGTCGTTATGAGTGACAATTTTGTGCcaattattttttctaaaataaaaaaattgctttaagcatgctgtatatataatataattttagcCATGTGCTAAAAATTTACTTTGGCACttgtgtcatttattcatttgacaaATTTAAACCATGCTCAGTTCATAATAACCTTAAGTATCATAAATCTATATTCACAGGAGGCAGCAGACATCATCCACAGAAACCCAGTGACCCAGTTTAGCCACAAGGCCTGTAGTaccagactctctctctctctctctcgctctgatCCACATCTCTCATTAGCTTTTTTGGTTGAAAGATTGAGGCCAGAAAACccaaaaagtttaaataaaaatcaacactTAAAGCTATGATGATgatgttaataataacaactattAGTGtaatattgcattcattttatgtattattcttAGTATGGAATAGTATATTAGTCATACAGTATGTAAAAACAACTTACTATATTTGCCAAAATGCTCAGCAACAGAACTGTGTACAAAATtgcatcccacaatgcaatgcatttacGCTAGCGCTTCACTCTCCAGTTCTCTCTGAATCTGTTTTGAATCTGAATAAACCTTGGTTCCAGACCAAGCTGGGGCTTCATGTCTCAAACTTTCCTCCTTCTCTCAAGCCCTTCAAAAATCCCACTGTTATCCCCCAAAACCACCCGCTCCTGCTCCAGAAATATCCTCATATTCCTCAGAGCTCTGGGGACCATCTGTCTTCACTTCCATCTGCCAAAACATCCATGCATATAAATACTTCCTCCAATCTGTTTTCATCTGATTTtgcaatatttcatattacatCACAGTGTATTAACCATTGCAACGTATAAATCCTTCATTAAATGACGTCAAGTTTctca

Function

symbol description
coa1 Orthologous to human COA1 (cytochrome c oxidase assembly factor 1).

NR:

description
PREDICTED: cytochrome c oxidase assembly factor 1 homolog

GO: NA

KEGG:

id description
K18173 COA1; cytochrome c oxidase assembly factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235366.1 True 2269 mRNA 0.36 5 4827437 4830481

Neighbor

gene id symbol gene type direction distance location
wdr48b wdr48b,LOC107757819,LOC107662983,LOC107600221,LOC107713656 coding upstream 6781 4812939 ~ 4820656 (+)
LOC122332276 urgcp,LOC107662982 coding upstream 14968 4800795 ~ 4812469 (+)
LOC122334471 NA coding upstream 28287 4795442 ~ 4799150 (+)
sema4e LOC107698504,LOC107757804,LOC107662986,LOC107713625,LOC107599253 coding upstream 39688 4773535 ~ 4787749 (+)
stap2a stap2a,LOC107757807,LOC107600228,LOC107713653,LOC107698505,LOC108280350,LOC107599279,LOC108433098 coding upstream 53568 4763416 ~ 4773869 (+)
LOC122341832 NA coding downstream 61634 4892115 ~ 4894607 (+)
LOC122341982 zgc:112320,pde6g,LOC107718621,LOC107660259,LOC107661785,LOC107553649 coding downstream 77870 4908351 ~ 4936740 (+)
si:dkey-282h22.5 NA coding downstream 122020 4952501 ~ 4957859 (+)
antkmt fam173a,LOC107553674 coding downstream 127531 4958012 ~ 4961980 (+)
xpo6 xpo6,LOC107715628,LOC107718574 coding downstream 133080 4963561 ~ 4983738 (+)
G17003 NA non-coding upstream 33403 4792546 ~ 4794034 (+)
G16991 NA non-coding upstream 173183 4604054 ~ 4654254 (+)
G16990 NA non-coding upstream 176799 4602024 ~ 4650638 (+)
LOC122341099 NA non-coding upstream 178266 4647091 ~ 4649171 (+)
G16984 LOC107757310 non-coding upstream 213007 4556821 ~ 4614430 (+)
G17018 LOC107715650,LOC107550229 non-coding downstream 34727 4865208 ~ 4867318 (+)
LOC122333539 NA non-coding downstream 68358 4898839 ~ 4903279 (+)
LOC122341984 NA non-coding downstream 82213 4912694 ~ 4914493 (+)
G17026 NA non-coding downstream 161515 4991996 ~ 5035379 (+)
LOC122341773 NA non-coding downstream 376763 5207244 ~ 5211693 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other upstream 280870 4470732 ~ 4546567 (+)
G16979 NA other upstream 365163 4458698 ~ 4462274 (+)
G16955 crebbp,LOC108440697 other upstream 389236 4437288 ~ 4438201 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other upstream 422053 4357032 ~ 4405384 (+)
G16672 NA other upstream 793911 3969515 ~ 4033526 (+)
G16981 NA other downstream 75175 4905656 ~ 4906966 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other downstream 480012 5310493 ~ 5312371 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other downstream 585277 5415758 ~ 5480607 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 726527 5557008 ~ 5565974 (+)
G17302 NA other downstream 766618 5597099 ~ 5598232 (+)

Expression


Co-expression Network