card11 (card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320)


Basic Information

Item Value
gene id card11
gene name card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16150853 ~ 16175090 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235413.1
ATTTACTACGAGGCTGCAGGTGAAATGCTGTCTCGTCTTGTGAGTTGTTGAGACAGAGTTCAGTTGTTTGAAACACTGGCGTCTTCAAGTGACTAGAATGGAACGACCGAACTAGACCGCGGGAAGTGATCTTCAACAGAGGCCCCTGCAGGAATGGAGAACGGAGGCTCGATGAACTTGCTAGACTACGGGGAGGCGTTGTGGGAAAATGCAGAGAAGAACCGGTACATCTTGTGCCGTTTCGTCAACCCCAACAAGCTGACCTCGTATCTACGGCAATGCAAGGTCATCGACGAACAAGACGAAGACGAGGTGCTCAACTCTCGCCTGCTGGAGTCCAAAGTCAACCGAGCAGGTCGGTTGTTGGATATCCTGCACACAAAAGGAGAGCGAGGCTATGTGGTTTTTCTAGAGAGTCTAGAGTTGTACTACCCTGACCTCTACAAACTCGTCACGGGGAAAGATCCTACACGCAGATGTTCCACTATAGTCGtGGAAGAGGGCCAGGAAGGGCtaatacagtttttaatgaatgaagtCATAAAGCTTCAGCAGCAGTCCAAGGCTAAAGACGTGCAGCGAGTGGACATCATGACCAAATGCCGCACACTAGAAGATGAGCACAAGAAGCTACGACTGGCCAACCAGGAGCTGCAGGCTTTCCAAGAACGCTACAATAAGATGAAAGAAGAGCGTAATAACTATAACGATGAACTTATTAAGGTGAAGGATGACAACTATCAGCTAGCTATGCGATATGCCCAGCTCAGCGAGGAGAAGAATATGGCGGTGATGAGGAGCCGCGACCTTCAGCTAGAGATTGACCAACTAAAGCACAAGTTGAACAAGGTGGAGGAGGAGTGCAAAATGGAAAGGAGGCAATCTCTGAAATTGAAGAATGACATTGAGAATCGACCTCGGAAAGAGCAGATATTTGAGCTGGAGCGAGAGAACGAGGTCTTGAAGATCAAACTCCAGGAGCTGCAGTCCATCATACAGCCCGGCCCTCTACCTGATTCAGACAAGGCCATCTTGGATATCCTGGAGCATGACCGACAGGAGGCTCTGGAGGATCGCCAGGAGCTAGTCAACAGACTCTATAACCTGCATGAAGAGATCCGACAGGCCGAGGAGCTCCGTGACAAGTACCTGGAAGAGAAGGAGGACCTTGAATTGAAGTGCTCCACTTTGGTGAAGGACTGCGAAATGTACAAGAACCGCATGAATACGGTCATGGTGCAGCTGGAAGAGGTTGAACGTGAGCGGGATCAGGCTTTCAAGTCAAGAGATGATGCTCAACACCTAGTCTCTCAGTGTCTGATTGACAAAGACAAGTACCGCAAGCAAATAAGGGAGTTGGAAGAAAGGAGCGATGAACTTCAAATTGAAATCGTACGCAAAGAAGCCAAGATCGTCAACCTGGAGTGCAAGCTGAGACGGATGGCCAAAGAAAATGGTTTGGATCAGAGCCTGCCACGAGACATTACTCCACTAATTATTGCTCAGCACTTTGGGCAACCTGATGGAAATACAGGAGGACCTTCAGAGGACTCTGGAGAAGACACTGTTGATGATCAAGAGCCTAAGCTCCAGCGCAGAAGCAACCTTAAGGGCAGAATAAACAGACCTAAATCTCCAGCCGCTGGACCCAAAAGTCCTCACTTCCAagCCATGCCTTTCACAAATGGAGATCTGTCAGAACCTGCAGCTAATGACAACACAAGTCTTAATAGTGCCAGTGCAGTGATTTCTCCTGCAGAGatctgctttaaaaatCTGCGATGCCGTAATGACAGTATCTTGTCCACTGTGCCTGAGCCTCCAGACCAGAACTCCATTGTCAGGAGAAGCAAGGAGAACCCAAACTCACAATACAGATGTATTCCCATCTCAGACACTGCAGATACTGACAGTGGAGACAATGCCGACATGGATGACCATGACTTAGACTTTTCCTCCTACGGgccttcatccatccattcatcttcatcttcccACCAATCTGAGACAATGGACTCATATGATCTGGAGCAAGTCAATAACATCTTCAGGAAATTCTCTTTGGAGAGaccTTTTCGTCCTTCGTTAACATCGGGCCCTCCTCAAAACACATTGCGGCCAGTGCAGAGCCTTTTTCTATCTGGAGAAAATGTTCTGTCGGACATCACTCTGATCGGTGGAAATGATAGCGGCATCTTTGTGTCCTCTGTCCAGTCCGGTTCTGAAACAGACCGGGCCGGAGTTAAAGTCGGACATCATCTTTTAATGTTGGAAGGCAATATTCGTGGAGAAGTTCAAAGCGTTACTTTGGACACCTGCACCAAAGAGGAAGCTCACTGGACCCTGCAGAGATGCACCGGACAAGTGCATCTTCATTACAAGTCTAACTATGATGGCTACAGACGGCTGCTGAAAGACATTGAAGATGGCACAGTGGTATCCGGAGACTCTTTCTACATCCGTCTCAATCTGAACATCTCCAGTCAGATGGACAACTGCTCACTGAATGTACGATGTGACGAGGTGCTCCATGTTCTGGACACCATGCACCAGGGCAAATGCGAGTGGCTGTGCTCCCGGGTGGACCCTTTCACCAACAAGGACACAGAGAGAGGCACCATACCGAGCTACTCAAGAGCCCAGCAGCTCCTCTTGGTGAAGATTCAGAAGCTGATGTGTCGAGGAGGTCGAGAGGAAGCCGAAACTTTGCGAGGACTCCGGAACACTCTACAACCCGAGGAGCCCACACCGTCTCAAGACCCCAAGTCTAGTCCACGTCTGTCCAGAGCCAGCGTTTTCATCTTTCAGTTATTACAGTTTGTCAGCAGGGTGGATAACAAGTACAAGAGGATGAACAGCAGTGAGCGTGTCCGCATTGTCAATGGAGGAAATCCATCATCAGTTTCCAGACCAGGTTTTGAAACGCTGAGGCCTGAGGACACGTCTGACCAAGACAGCGACTTAAACAAGAGCTTGAATCTGATCCCGTACAGTCTAGTGACGCCACATCAATGTCAGCGCAAAAGACCTGTCCTCTTCACCCCCAACGTCCTAGCCAAGACCATCGTACAGAAGTTCCTTAACCTTGGAGGTGCTATGGAGTTCAATATATGCAAGCCAGACATTGTGACAAAAGACGAATTCCTCATGAAACAGAAGATAGAGCCCATCATTTATTCCAAAGAAAAGCAGGCATGCACATATGAATGCATCACCCCAGAAAACATCGAAGCGGTTGCCTTCAAGAATAAGCACTGCCTTCTGGAAGCCGATCTAAACTGCGTGAAAGACCTGTTGAGGAGAGAGATCTACCCCATCGTGATCTTCATCAAAATCTGCGAAAGGAACATCAAAAAATTAAGGAGGCTCCCTCTGAAGGTGGACTCTGAGGAGGAGTTCTTGAAGATGTGTCGGTCCAAGGAGAAGGAGCTGGAGATGCTGCCGTGCCTGTACGCGGGTGTGGAACCTGACTCTTGGGGAGGGGTGGAGGATCTCGTCAGGATCATCAAGGACAAGATTTTTGAGGAGCAGAAGAAGACGGTCTGGGTGGAACAGGACCTGTTGTGACCTGATCACACGAGCGAGTAACTGCTCGGGTGAAATACGTGCAAGCAGCGCAGGCATGTGAACAGGAAATGACTCTGTCAAAGGCGTTAAAGGTGAGGTGTGGCTCTCTCTgctgccaaaaaagaaaaacgggGACGAGGTACAATGCGATGCTCGAGTTACACATTGTAAGCAGTGGAAAGGTTCTCAGCTCAGTGCTTCTTATCTTTTATTCTCCTGAAGCATAGATGTCGTCAATAAAACATTATCCTTCCCAGCATCCACCTGTAATGCTCAGTATGTAAACAGTATGTACTTTTGTCTTTATAGGcacattacataatttaatatcagtgatttccatatttatttgaatacaaaCGTACACGTGTGGCTTATTTCTGTGCTCATTTCGGCTGCTACGTTAATACTTGCCAAGGTTTTATTGTACCTGTGGGCCATACTGTAATTTAATGGCATTATACTGTACATCACATGTCAAGCTCATGACTGTAATTTGcaactctttttttatgttggcATTATTTTGAAGTCTGTTTAAGCTGTCATTGATTGATGTCctaaatgttattattgtgaGAGCTATTTCTGATGTTTACTTAATGTTCCATTACAGCTTGCCTTTTAGAAATACCATGATTTATGGGCACCTATACCAAGacatatacttttttatatttaacttggTAACATTTCGGATTAAATGCATGTGAATGTATAAGCGAATGTATAAGGGATTTTGGATGAAAAGgggttttcagcatcatttaatcatttttcctGTACCTTAGAATGCGTTATGTTTAACCTTTTtcttgtatatattattataataacctTTTTAACCATAATTTACACAAGACGCCCACTAAAATATCACTCAGAGTATCATTAGTTCTATACCATGTTTAAGATGACATAATGACATGAATGGCTAATTTATCATAATTCTGAATCATTACCAATCTCTGCCACTATTCATAAAAGAAATTGTCAGCAAATGGGTAAAAATACccattttattaaactgtaatataatttagtaaGACCAGTACAGGTCAGATGTTTaaattttgcatatataaatatcttttacactgaatgaacatttttttacatattttgagtttttcacaaaagttgtttaaaacagttaacaCCTTTCCGTGTTAACTTTgctttttgtgtatataaaatcacttttgtaaattTGGTGCACCGAAATGGTACGTCCTGTCCCTGACCCGTACAAGTcggattactttttaaatctttataattaaatgcattgcatatatttaattatttgtagttCTTACAgtacaaacattacatttatacagtGGTATGCTccatttattcagtaaagtcgtGAAAACTGTATAtgtaataattctaaaatgaatTATGAGAAAATGCAGGTGTCAGCTACTCATATTGACCCCATGTGATTTTAAACACACAGCATATTGATCTGCATATATTCATTGTTGTTACTGAAGACTTTAAAGGGGAAATTTAATGTACCACCTTCAGCgcttgtttattaaaatgaaacggAAATGTC

Function

symbol description
card11 Predicted to enable CARD domain binding activity. Predicted to act upstream of or within positive regulation of NF-kappaB transcription factor activity and regulation of apoptotic process. Predicted to be active in cytoplasm. Is expressed in gill; intestine; kidney; spleen; and unfertilized egg. Human ortholog(s) of this gene implicated in diffuse large B-cell lymphoma; immunodeficiency 11A; and immunodeficiency 11B. Orthologous to human CARD11 (caspase recruitment domain family member 11).

NR:

description
PREDICTED: caspase recruitment domain-containing protein 11

GO: NA

KEGG:

id description
K07367 CARD11; caspase recruitment domain-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235413.1 True 5134 mRNA 0.44 24 16150853 16175090

Neighbor

gene id symbol gene type direction distance location
mmd2a mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066 coding upstream 303887 15835083 ~ 15846966 (+)
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding upstream 321870 15823776 ~ 15828983 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding upstream 327418 15819654 ~ 15823435 (+)
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding upstream 453479 15639017 ~ 15697374 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding upstream 532789 15608385 ~ 15618064 (+)
eif3ba eif3ba,eif3b,LOC107703402,LOC107674692 coding downstream 37277 16212367 ~ 16221215 (+)
chst12a chst12,chst12a,LOC107703401,LOC107758335,LOC107581708,LOC107674724 coding downstream 47110 16222200 ~ 16229178 (+)
lfng lfng,LOC107703400,LOC107674646,LOC107758333 coding downstream 118132 16293222 ~ 16301224 (+)
snx8a snx8,LOC107758331,LOC107592787,LOC107674736,LOC107703396 coding downstream 184822 16359912 ~ 16369501 (+)
mrm2 mrm2,ftsj2,LOC107703397,LOC107674604 coding downstream 197679 16372769 ~ 16375491 (+)
LOC122333245 NA non-coding upstream 270184 15879468 ~ 15880669 (+)
G20469 NA non-coding upstream 271524 15879130 ~ 15879329 (+)
G20468 NA non-coding upstream 272427 15878189 ~ 15878426 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding upstream 274894 15874033 ~ 15875959 (+)
G20465 NA non-coding upstream 276928 15872802 ~ 15873925 (+)
G20647 NA non-coding downstream 117515 16292605 ~ 16292806 (+)
G20656 NA non-coding downstream 132708 16307798 ~ 16308018 (+)
LOC122342129 NA non-coding downstream 421202 16596292 ~ 16597215 (+)
G20744 NA non-coding downstream 611742 16786832 ~ 16787050 (+)
G20798 NA non-coding downstream 814122 16989212 ~ 17052645 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other upstream 406659 15706936 ~ 15744194 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 870740 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 965980 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 981595 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 1479285 14664919 ~ 14671568 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 4530 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 515613 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 595455 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 937958 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 962840 17137930 ~ 17200630 (+)

Expression


Co-expression Network