si:ch211-195b15.7 (si:ch211-195b15.7,LOC107658491,LOC107689666,LOC107554103,LOC107730731)


Basic Information

Item Value
gene id si:ch211-195b15.7
gene name si:ch211-195b15.7,LOC107658491,LOC107689666,LOC107554103,LOC107730731
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12049457 ~ 12059549 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235417.1
GGAACATACTGTATGAAGACAGAGGCACACTAAAACGTGTCGTTTGCAAGAAACTCATTAGACGtctgtgctttttaaaaccacAGAGGaatGCCTGTGGATGTGGAGAAGattattcagtttattaaacAAGGCGACCAGGACAATGTTCAAATACATCTGGATGACTACAACACTGAGAActctgaatgtttcttttttgatgtggaagaaagagagaggagaaagCAAAGAGAGCTGGAAGAGTTCCGCAGGAATAAAGTGAGAGAGTATGTTCCAGACTCTGACTCAGATTTTGACTCTGATGAGAACGAGGACCCAAATCTTGTTCTGCGGAGGAGGCTTGCTGCAGCTCTGATCTGGTTCATTCGCATGCGGCTGCAGCCGGGGGTTTTGAGGGTGTGTCTGCGAACTCTGAGAATTATCTCGCGTGATCGAAAGGCCTTGGCACCCCTGATCACGGACTACGCCATTCTAACTCTTGCTCGACTTGGGGGCATCTCCGTCCTGCCCACCTGGCCTGAAGAAGAAGAGGCTGAGTGGGGCAGTGACATTACTCAACAGAATGAGACAGAGACACGTCTGGATGATAATGGCGGCAAAACACAACGGCCAACCTGTTATAGGGCGGAAGATGATtcagtctctgtctctgcagCCTGTGCTCAACCTTTGCTCAGTGAAGGAGGCTTGCAGCTCAACCCTGTGAATGTGACATCTAACTGTAATACTGAGAGAGAAGCACAAAACGAGTGCTGTGAAGAAAATGCGAGGAAAGATGGGGTCTGTGGGCTGTTGACACGAGGAAAGAGGGATGCTAGAGAAGAGAAGGATGAGGAGGGGGAGGAGGGGTACGATGATGGAGAGGTCTGGAGGAAAGAGGCCATGAAGGCCCTGTGCAATATCATCTATAACAGCCCAAAAGCACAGGAGAGGGCCAGCATCCTGAGGTTGCTCCACGGCCTGTCAGAGAGACTCAAAGATGGTATACATTCCTCATCACCTCCAAGTGGTCAGTTTTATGAACTGCGACTTCTCTTTCTGTTGACTGCTTTACGGCCCGAGCTCAGGATAGAGCTCCGCCAGGAGCGTGGCGTGTCTATGCTGACTGCTGCTCTGGAGCAGTGTTTGGAAGTGCACTGGGGTGAAACACATGAAGTACTCACTGACCTCACAGCACCCCCTGTGTGTAAGGAGGTGACTCAGCGCGCCCTTGAGATTCTCAAGACTCTCTTCAACATTACCTACAGTGTGCACAGACAGGACATAGATGAGGAGGCTGCAGCTTTGTATCGTCACCTAGCTGCAGTCCTGCGTCACTGTCTGCTCATACCCTGTGAGGGAGAGGATAGAAGAGAGGAGCTGCAAGGACACACAGTGAATGTGCTCTCATCGCTGCCTCTGCAGTGCTTGGACGTTCTGCTGTCCGTTCGTCTGTCTGAAGGTTCGAGGGAGTCCGGCGGAGTCAACATGGACTGCGTTCACACTCTGCTGCTCTTCATGGAGAAGAGACTGGATAGAGGTCATAAGCTGAAGGAAAAGCTGGCTCCAGTGTTAAACCTGTTGACTGAGAGCAGCAAAGCACACAGGGAAACTAGGCATTATCTCAGACAGCAGATCCTGCCTCCGCTGAGAGACGTTGAGATGAGGCCTGAACAGGGGAGCACACTGAGGAGCAAACTAGTGCGACTAATGACCCATGTCGACACTGATATCAAACACTGTGCAGCTGAGCTTCTTTTTGTGCTCTGTAAAGAAAATGtgAGCAGGTTTGTGAAGTACACTGGATACGGTAATGCGGCGGGGCTGCTGGCGGCACGGGGGCTTTTGAACGGCCGCGGCCCATCTCCTCAACCACAGTACTCCAGTGACTCTGACTCAGACACGGAGGAGTACAGACAAGCCAAGGACAGGATTAACCCTGTGACGGGACGGGTGGAGGAGGAACAGCCTGATCCAATGGAAGGAATGActgaggaagagaaagaggcaGAGGCGCTCAGACTCATAAATATGTTCAACAGGCTCTCGAGGAACAAAATCATTCAGCCAATGCGAGTGACAACAGACGGAAAACTGGCGCCCCTTTGTGGCCAGACGAGGCACAGCGCTGTGCAGGAGGAGGacgaagaagaggaggaagatgatgatAGCGAAACAGAGCAGTAATGATGACAAGATGATAATGATGATTAATAACCGACAGGTGCAGgatattttataaaactgaCTGATACAGCGCTAATacaatagtattattaatagCGCAAATTAATGTAACACATAATAAGGAATAATTTGTTGTTCGTTAATTCAGTTATTGGTGTATGTAAAAAGAAATGCTatagagacaaaaaaaacagaataaacaaaGCTCTGTGTGAAAAAACGAGGGAGGGGAGATATTTTGTAACGTACGTAAAATAGCGGAGAATGACATTTCTTTGTAATAACTCTCGTGAGTCACGAAGAGCTAGAAACCACAAAATAGGGAGCTACTAAGAAGcgaaggagaaagaaagagacaaagagagacagCCATCACACCAAAGACAGACAAACACTCCTGGAAAATGCTGCTGGTGTTGCCATGGTTATGTTACCATGGTAACAACAGGAAATGCAGTTCTACGGATTCTTTTTTTTCGCGCTCTAGCAGGAGTGAAATGTTTACCTTGAAGAGAACTGCTGAGGGTCAGTCTAACGCTCTGCGCCGAGAACGCCGAATAAAAATACATCCTcagagaaatgttttcatttacaaaaaaatgattagcaAACTTTGAACCAAAGTACAATGTGTAGAAGcaggtaattttttttcaccGTTCTGCTTGATTTACAGTGTTTTTCCCGCCACGATATCATTTCTCCCCGCATAAAATACCAGCAAGTATgtcaataacaaat

Function

symbol description
si:ch211-195b15.7 Predicted to enable G-protein alpha-subunit binding activity and guanyl-nucleotide exchange factor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Located in cytoplasm.

NR:

description
synembryn-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235417.1 True 2910 mRNA 0.47 14 12049457 12059549

Neighbor

gene id symbol gene type direction distance location
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671 coding downstream 56294 11989102 ~ 11993163 (-)
brsk1b LOC107658484,LOC107548343,LOC108427376,LOC108274928 coding downstream 83509 11949110 ~ 11965948 (-)
cpt1a2b cpt1cb,LOC107730771,LOC107689673,LOC107548342,LOC106600940 coding downstream 100902 11924369 ~ 11948555 (-)
pih1d1 LOC107583023,LOC107658482,LOC107729529,LOC107730744,LOC107548339 coding downstream 141664 11901129 ~ 11907793 (-)
tnnt1 tnnt1,LOC107583024,LOC107729530 coding downstream 148730 11893395 ~ 11900727 (-)
rcn3 rcn3,LOC107729515,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding upstream 43393 12102942 ~ 12106684 (-)
tspan4b tspan4b,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108427360,LOC107583081 coding upstream 67461 12127010 ~ 12131799 (-)
si:ch73-248e21.7 NA coding upstream 73047 12132596 ~ 12136213 (-)
si:ch73-248e21.5 NA coding upstream 77169 12136718 ~ 12140766 (-)
mylpfa mylpf,mylpfa,LOC107582990,LOC108249004,LOC108274226 coding upstream 187205 12246754 ~ 12249930 (-)
G19436 NA non-coding downstream 4057 12044649 ~ 12045400 (-)
G19427 NA non-coding downstream 22517 12026364 ~ 12026940 (-)
G19422 NA non-coding downstream 26030 12019583 ~ 12023427 (-)
LOC122330904 NA non-coding downstream 73888 11968594 ~ 11975569 (-)
G19385 NA non-coding downstream 177551 11867007 ~ 11871906 (-)
G19453 LOC107583009,LOC107729419,LOC107658421,LOC107730751,LOC107554101,LOC107689664 non-coding upstream 25780 12085329 ~ 12086221 (-)
G19463 NA non-coding upstream 33350 12092899 ~ 12097362 (-)
G19503 NA non-coding upstream 122709 12182258 ~ 12182484 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding upstream 167026 12226575 ~ 12230379 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding upstream 206296 12265845 ~ 12270936 (-)
LOC122341756 NA other downstream 128690 11909775 ~ 11920767 (-)
G19383 NA other downstream 168498 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 321456 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 334738 11694272 ~ 11714719 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 620278 11411985 ~ 11429179 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 279638 12339187 ~ 12343872 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 563234 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 622441 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 946447 13005996 ~ 13068190 (-)
G19700 NA other upstream 987492 13047041 ~ 13047494 (-)

Expression


Co-expression Network