ddx42 (ddx42,LOC107583038,LOC107658468,LOC107729497,LOC107730759,LOC107693495,LOC107548322)


Basic Information

Item Value
gene id ddx42
gene name ddx42,LOC107583038,LOC107658468,LOC107729497,LOC107730759,LOC107693495,LOC107548322
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11731993 ~ 11739714 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235421.1
ACTAAATGAGTCCATTGTAAATGACGTAAAACCCAATCTCCGAGAAGTGTGCAAGATAGCCTGGAGTGGTAAATACGTTGTGGATAAATAAGGTGCCCACCCACTTTAGAAGATCGTTCTTTTTACGTTATCTGAAACagTCAACAGCAATGAACTGGAACAAGGGAGGCCCGAGTGGCAAGCGAGGCTTTGGATTCGGGGGATTCTCTCTTGCGAGTGGAAAGAAAGAAGAACCTCGTCTTCCCCAGAAAGCCCACTCCGCATTTGGAGCTTCAGGACCATCTGGTGCATATGGCAAGAACCAGCAGCTTTCATCTTTTTACAAAATAGGAACAAAACGAGCCAATTTCGACGAGGAGAACGCtTATTttgaggatgatgaagaggagTCTAGCAGTACGGATCTGCCATATATACCCGCTGAGAACTCTCCCACAAGAAAGCAGTTCCAgtctggaggaggaggaggaggcggatCTGACAGTGAGGATGACCCTCTTGACTCTTTTATGGCTGAGGTGGAGGACCAAGCGGCAAAAGATATGAAGAAGCttgaagaaaaggaaaaagagaagaagTTAGCCAAGGGTATACGGGATGACATTGAAGAGGAGGATGACCAAGAAGCATATTTTCGTTACATGGCGGAAAACCCAACAGCTGGGCTGACCcaagaggaagatgaggaagaagTGGACTATGACAGCGATGGAAACCCCATTGCTCCTACTACCAAAAAGATTATCATGCCACTGCCCCCAATAGACCACTCAGAGATTGACTATCCACCTTTTGAGAAGAACTTCTATATTGAGCACGAGGAACTCAGTAGTCTGACTGAGACCGGGGTGGTGGAACTGAGAAAGAAACTCAATCTGAAGGTTTCAGGTGCAGCCCCTCCTAAACCAGCCACCAGTTTTGCCCACTTTGGATTTGACGAGCAGCTCATGCACCAGATCCGTAAATCTGAGTACACCCAACCCACACCCATCCAGTGCCAGGGTGTTCCGATAGCTTTGGGTGGCAGAGACATGATTGGCATTGCCAAAACTGGCAGTGGAAAAACCGCAGCTTTCATTTGGCCAATGCTGGTGCACATCATGGACCAGAAGGAGCTAGAGCAAGGAGAGGGACCTATTGCTGTGATCGTCTGTCCCACCAGAGAGCTCTGTCAACAgATCCATTCGGAATGCAAGCGCTTCGGGAAGGTATATGGCCTCCGCTCGGTGGCAGTGTATGGAGGAGGCAGCATGTGGGAACAAGCCAAAGCTCTACAGGAAGGAGCCGAAATTGTTGTCTGCACCCCAGGTCGCCTGATCGATCATGTGAAGAAGAAGGCTACATCTCTTCAGCGAGTGACCTATTTGGTGTTTGATGAAGCTGATCGCATGTTCGATATGGGCTTTGAATACCAAGTGAGATCCATTGCCAGCCATGTCAGACCTGATCGACAGACTCTGTTATTCAGTGCAACATTTCGGAAGAAAATTGAAAAGCTGGCACGAGACATTTTGGTTGACCCCATTCGTGTTGTGCAGGGAGACATAGGAGAGGCTAATGAAGATGTCACTCAGATAGTGGAGGTGCTGCAGACGGGGCAGGAGAAGTGGGGTTGGCTGACACGCAGGCTGGTTGAGTTCACCTCAGCTGGCTCTGTGCTCATCTTTGTCACCAAAAAGGCTAACTGCGAGGAACTGGCTACAAATCTCAATCAGGAAGGTTACAGCCTAGGTCTGCTACATGGAGACATGGATCAGAGCGAGAGGAACAAGGTCATTGCTGACTTTAAGAAGAAGAATCTGCCCGTATTAGTAGCTACTGATGTTGCTGCTCGTGGGTTGGATATTCCATCTATCCGTACAGTTGTGAACTACGATGTAGCACGAGACattgacacacatacacatcgAATTGGTAGAACAGGTCGTGCAGGAGAGAAGGGCCTAGCTTACACTCTGCTCACCACTAAAGACACTTCATTTGCTGGTGACCTGGTTCGAAATTTAGAGGGAGCCAATCAGAGTGTTTCAAAGGATCTGATGGACCTGGCAATGCAGaatccCTGGTTCAGGAAGTCCCGCTTTAAAGGAGGGAAAGGAAAGAAGCTAAATATTGGAGGTGGAGGCCTGGGTTACAGAGAGAGACCAGGCCTTGGATCTGAATCCACTGAGCGCAGCAGTAGTGGTGGTTCTGCTCTTGGTAACTATGAAGCCTACAAACCCTCCTCTGGGGCCATGGGAGACCGTATGTCCGCCCTGAAGCAAGCATTTCAGGCTCAGTATAAAAACCACTTTGTGGCAGCATCTGGTGTTCCTCCAAAACTCACCACAAAGTCCAGCAGCTCCTCTGGTTGGACCAGTGCAGGAAGTCTGAGTTCTTTGCCTTCAGGAGCACCAGAGGGGCCTGACGCAACCCCCCTGTCCTACTCTCCATCGCTGTCCTCTTCCTCGTTTCCCTCCATGCTGCCGCCCCCTGCTCTCAGCTCGGGCACCAAAATGAGCGGCTTCAGCAGTGCAGGCTCCCTGAGCTCAGTTTCAGACTCTTACTCTAGCTCTTCTTCAAAAGAGGGGTCCCGTAGCGATAGAAATGCTGACGACAGGGGTCATCGTGGAGATAGTCATTATCGTCACAGTGACAGGCATAGTGGCGGAGACCGTGACCGCTACTCAGAAAGGGATCGGCATAGTGACAGAGAACGTCACAGCGATAGTCGAAACGGTGAAGGGAGCCATAGGGACAGAGAGGGACGGTCAGAAAGAGATGGGGGTGAGAGGTCAGGGACTCATAAAGACAGCTTTGCGGTTCCTGATCCCCCCAAACGCAAGAAAAGCAGATGGGACAATTAAAGTGTGCAGGAAAGCAGCAGTCAACTGTTCTTAGTTCAGAGTACACAGCTGACCCAGTCTCTAGCAGTGTCTTTACCTGTCTGCTTGTCTTTTTGTCTGAAGCTGTTTTAAGGGTGCTTAGGAGACTCCCGCCCCATCACCCTTGTCATTTCCCTGGAAATAAAAGCATCCATTAAAGGCTCTTTCAGCCAATTAGAACTGTGATTTGGCAAGATGAATAAAATGCACCTTGAGCCTAAGTGTTTTGTTAAAGTAGACATGACTATTCAGTGGAACGCAAAGTGGTTTCTTTCTgaagaaacaatattttatgaGAAATTTTGgctatgtaacaaaaaaaatattactttaatagttgacaaggttttttttgtttgtttgctttgtgcTGCTTCACAATCTGTCaactatattttttgttaaagacTGTAAAATTTTCCACTGTTTTACTGTGTGCTGTTATATTTCAAACATCACCATTTTTAAGTTCTCGATGTCCATTAATGGGTTTCTTTCGTTCATACTTGTTAATATTTGAATTCAAATGCTTATTAGTAGTATGTTCAGGTTGTGTTTCTGTGCTGCCCAGCATGTAGTATAGTTCAATTTGAAGGAATGAAGTCTACCATAAATCCACACACATTGATCAAGCtagtcaaaaaaaacaactggatAGGGAGAAAACATATCAGTGAATCTACAATAAAATCTATGTACTACACTATGATCTTGCATTCCCTTGCTCCATTTCCATCTCTTGTGAAGACACACTGTGTCACAATGTAAACCTGTCTGTAGAAACAtgattatctttattattttggatACTCTAGTAGTGTACAATTCTGTCTGTTGTCATGTttctgaattaataaaaagaggACACAAAAAGG
>XM_043235423.1
AAGCGGCAAAAGATATGAAGAAGCttgaagaaaaggaaaaagagaagaagTTAGCCAAGAAGCATATTTTCGTTACATGGCGGAAAACCCAACAGCTGGGCTGACCcaagaggaagatgaggaagaagTGGACTATGACAGCGATGGAAACCCCATTGCTCCTACTACCAAAAAGATTATCATGCCACTGCCCCCAATAGACCACTCAGAGATTGACTATCCACCTTTTGAGAAGAACTTCTATATTGAGCACGAGGAACTCAGTAGTCTGACTGAGACCGGGGTGGTGGAACTGAGAAAGAAACTCAATCTGAAGGTTTCAGGTGCAGCCCCTCCTAAACCAGCCACCAGTTTTGCCCACTTTGGATTTGACGAGCAGCTCATGCACCAGATCCGTAAATCTGAGTACACCCAACCCACACCCATCCAGTGCCAGGGTGTTCCGATAGCTTTGGGTGGCAGAGACATGATTGGCATTGCCAAAACTGGCAGTGGAAAAACCGCAGCTTTCATTTGGCCAATGCTGGTGCACATCATGGACCAGAAGGAGCTAGAGCAAGGAGAGGGACCTATTGCTGTGATCGTCTGTCCCACCAGAGAGCTCTGTCAACAgATCCATTCGGAATGCAAGCGCTTCGGGAAGGTATATGGCCTCCGCTCGGTGGCAGTGTATGGAGGAGGCAGCATGTGGGAACAAGCCAAAGCTCTACAGGAAGGAGCCGAAATTGTTGTCTGCACCCCAGGTCGCCTGATCGATCATGTGAAGAAGAAGGCTACATCTCTTCAGCGAGTGACCTATTTGGTGTTTGATGAAGCTGATCGCATGTTCGATATGGGCTTTGAATACCAAGTGAGATCCATTGCCAGCCATGTCAGACCTGATCGACAGACTCTGTTATTCAGTGCAACATTTCGGAAGAAAATTGAAAAGCTGGCACGAGACATTTTGGTTGACCCCATTCGTGTTGTGCAGGGAGACATAGGAGAGGCTAATGAAGATGTCACTCAGATAGTGGAGGTGCTGCAGACGGGGCAGGAGAAGTGGGGTTGGCTGACACGCAGGCTGGTTGAGTTCACCTCAGCTGGCTCTGTGCTCATCTTTGTCACCAAAAAGGCTAACTGCGAGGAACTGGCTACAAATCTCAATCAGGAAGGTTACAGCCTAGGTCTGCTACATGGAGACATGGATCAGAGCGAGAGGAACAAGGTCATTGCTGACTTTAAGAAGAAGAATCTGCCCGTATTAGTAGCTACTGATGTTGCTGCTCGTGGGTTGGATATTCCATCTATCCGTACAGTTGTGAACTACGATGTAGCACGAGACattgacacacatacacatcgAATTGGTAGAACAGGTCGTGCAGGAGAGAAGGGCCTAGCTTACACTCTGCTCACCACTAAAGACACTTCATTTGCTGGTGACCTGGTTCGAAATTTAGAGGGAGCCAATCAGAGTGTTTCAAAGGATCTGATGGACCTGGCAATGCAGaatccCTGGTTCAGGAAGTCCCGCTTTAAAGGAGGGAAAGGAAAGAAGCTAAATATTGGAGGTGGAGGCCTGGGTTACAGAGAGAGACCAGGCCTTGGATCTGAATCCACTGAGCGCAGCAGTAGTGGTGGTTCTGCTCTTGGTAACTATGAAGCCTACAAACCCTCCTCTGGGGCCATGGGAGACCGTATGTCCGCCCTGAAGCAAGCATTTCAGGCTCAGTATAAAAACCACTTTGTGGCAGCATCTGGTGTTCCTCCAAAACTCACCACAAAGTCCAGCAGCTCCTCTGGTTGGACCAGTGCAGGAAGTCTGAGTTCTTTGCCTTCAGGAGCACCAGAGGGGCCTGACGCAACCCCCCTGTCCTACTCTCCATCGCTGTCCTCTTCCTCGTTTCCCTCCATGCTGCCGCCCCCTGCTCTCAGCTCGGGCACCAAAATGAGCGGCTTCAGCAGTGCAGGCTCCCTGAGCTCAGTTTCAGACTCTTACTCTAGCTCTTCTTCAAAAGAGGGGTCCCGTAGCGATAGAAATGCTGACGACAGGGGTCATCGTGGAGATAGTCATTATCGTCACAGTGACAGGCATAGTGGCGGAGACCGTGACCGCTACTCAGAAAGGGATCGGCATAGTGACAGAGAACGTCACAGCGATAGTCGAAACGGTGAAGGGAGCCATAGGGACAGAGAGGGACGGTCAGAAAGAGATGGGGGTGAGAGGTCAGGGACTCATAAAGACAGCTTTGCGGTTCCTGATCCCCCCAAACGCAAGAAAAGCAGATGGGACAATTAAAGTGTGCAGGAAAGCAGCAGTCAACTGTTCTTAGTTCAGAGTACACAGCTGACCCAGTCTCTAGCAGTGTCTTTACCTGTCTGCTTGTCTTTTTGTCTGAAGCTGTTTTAAGGGTGCTTAGGAGACTCCCGCCCCATCACCCTTGTCATTTCCCTGGAAATAAAAGCATCCATTAAAGGCTCTTTCAGCCAATTAGAACTGTGATTTGGCAAGATGAATAAAATGCACCTTGAGCCTAAGTGTTTTGTTAAAGTAGACATGACTATTCAGTGGAACGCAAAGTGGTTTCTTTCTgaagaaacaatattttatgaGAAATTTTGgctatgtaacaaaaaaaatattactttaatagttgacaaggttttttttgtttgtttgctttgtgcTGCTTCACAATCTGTCaactatattttttgttaaagacTGTAAAATTTTCCACTGTTTTACTGTGTGCTGTTATATTTCAAACATCACCATTTTTAAGTTCTCGATGTCCATTAATGGGTTTCTTTCGTTCATACTTGTTAATATTTGAATTCAAATGCTTATTAGTAGTATGTTCAGGTTGTGTTTCTGTGCTGCCCAGCATGTAGTATAGTTCAATTTGAAGGAATGAAGTCTACCATAAATCCACACACATTGATCAAGCtagtcaaaaaaaacaactggatAGGGAGAAAACATATCAGTGAATCTACAATAAAATCTATGTACTACACTATGATCTTGCATTCCCTTGCTCCATTTCCATCTCTTGTGAAGACACACTGTGTCACAATGTAAACCTGTCTGTAGAAACAtgattatctttattattttggatACTCTAGTAGTGTACAATTCTGTCTGTTGTCATGTttctgaattaataaaaagaggACACAAAAAGG

Function

symbol description
ddx42 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleus. Orthologous to human DDX42 (DEAD-box helicase 42).

NR:

description
PREDICTED: ATP-dependent RNA helicase DDX42

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12835 DDX42, SF3B125; ATP-dependent RNA helicase DDX42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235421.1 True 3739 mRNA 0.46 18 11731993 11739714
XM_043235423.1 False 3174 mRNA 0.46 14 11731993 11738368

Neighbor

gene id symbol gene type direction distance location
LOC122330909 gfap,LOC107729544,LOC107721967,LOC107658466 coding downstream 43874 11681350 ~ 11688119 (-)
kcnh6a kcnh6a,LOC107583039,LOC107658465,LOC107674162,LOC107570755,LOC107721966 coding downstream 55666 11645898 ~ 11676327 (-)
ccdc47 ccdc47,LOC107721963,LOC107674171,LOC107729550,LOC107658463 coding downstream 91936 11633421 ~ 11640057 (-)
moto LOC107729445,LOC107658460,LOC107583041,LOC107674174,LOC107721968 coding downstream 129612 11597240 ~ 11602381 (-)
LOC122341820 LOC107583052,LOC107729535,LOC107658457,LOC107732863,LOC107674145,LOC100534815 coding downstream 280550 11449629 ~ 11451443 (-)
rnf113a rnf113a,LOC107693494,LOC107658472,LOC107729443 coding upstream 10514 11750228 ~ 11753580 (-)
LOC122338209 NA coding upstream 94663 11834377 ~ 11836695 (-)
baxb LOC107729453,LOC107658432,LOC107729452,LOC107548291,LOC107693506,LOC107730775,LOC107548334 coding upstream 97929 11837643 ~ 11843610 (-)
tnnt1 tnnt1,LOC107583024,LOC107729530 coding upstream 153681 11893395 ~ 11900727 (-)
pih1d1 LOC107583023,LOC107658482,LOC107729529,LOC107730744,LOC107548339 coding upstream 161415 11901129 ~ 11907793 (-)
G19117 NA non-coding downstream 321277 11410335 ~ 11410716 (-)
G19108 NA non-coding downstream 396193 11333756 ~ 11335800 (-)
G19019 LOC107561356,LOC107680886,LOC107732897,LOC107551139,LOC107729558,LOC108434911,LOC107687643 non-coding downstream 962595 10767300 ~ 10769398 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding downstream 1034454 10689164 ~ 10697539 (-)
G19375 NA non-coding upstream 30008 11769722 ~ 11771648 (-)
G19381 NA non-coding upstream 104300 11844014 ~ 11844199 (-)
G19385 NA non-coding upstream 127293 11867007 ~ 11871906 (-)
LOC122330904 NA non-coding upstream 228880 11968594 ~ 11975569 (-)
G19422 NA non-coding upstream 279869 12019583 ~ 12023427 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 3992 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 17274 11694272 ~ 11714719 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 302814 11411985 ~ 11429179 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other downstream 667395 11011936 ~ 11064598 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other downstream 1335652 10394314 ~ 10396341 (-)
G19383 NA other upstream 114034 11853748 ~ 11880959 (-)
LOC122341756 NA other upstream 170061 11909775 ~ 11920767 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 599473 12339187 ~ 12343872 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 883069 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 942276 12681990 ~ 12763090 (-)

Expression


Co-expression Network