rras (rras,LOC107583016,LOC107729461,LOC107658490,LOC107730736,LOC107554112,LOC107689668)


Basic Information

Item Value
gene id rras
gene name rras,LOC107583016,LOC107729461,LOC107658490,LOC107730736,LOC107554112,LOC107689668
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12019174 ~ 12023434 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235433.1
ACTCAGAGACGAAAAAAAGTTGCCCCtggtcatgaaaaaaaaactatcggAAGCAAGAGAGAGTCCAGAAATTACCAAGAAAAATCCAGAGGGCGGACATTCCTTTAAGCCTGGAATTCGCTTTTTATCTCCTTAAACAAGATGGTTGTGTCGCTTATACGAAGGGAGAATTTGTAGGCTAAATCTTGCGGATATAGTCTATTAAAGTTGTCAGAGTATTCGCGGGTTTGCAGTGGACTAAGTTGTCTGACTTTCGAGTCGCTAACTTGCCACCAGAAGGCTAATTTACTCAAGGCGGCTGCGGAAGAAAGGAGTACGACTATGTCAACTGAAGAAAGATATAAGTTAGTGGTCGTGGGCGGTGGAGGTGTGGGCAAAAGCGCCCTCACTATTCAGTTCATTCAGTCATACTTTGTGTCAGACTATGACCCGACCATTGAAGACTCGTACACTAAAATCTGCACCGTGGACGGAAAGGAGACTCGATTAGACATCCTGGACACAGCAGGGCAAGAAGAGTTTGGAGCGATGAGAGAGCAGTACATGCGCTCCGGAGAGGGTTTCTTACTGGTGTTTGCTCTTAATGACAGTGGAAGTTATGATGAAATTCAGAAATTTCACACTCAGATATTGCGGGTGAAGGATCGAGATGACTTTCCTATGGTTCTCGTCGGCAACAAATCAGATCTTGACCAGCAGAGAGTGATCTCGAGAGACGAGGCCGTGTCGTTTGCCCGAGAAAACAGGATCCACTATATGGAGTCGTCGGCTAAGAACCGCCACAATGTGGATGAAGCCTTCATGGAGGTTGTGCGAGCAATAAGGAAGTTTCAGGAGACGGAGAGTCCACCGCTCCCCGCTAATCACGCGGGCAAGCAGAAGAGTGGTGGCTGTCCCTGCACCCTGCTCTGACTGCCCCTCTGCACTGTTGCCTAGGAGACTGAAGCCCTCACTCTCACGCCTGGTGCCTTATATGTCTACacagagattgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgggtgtgtgggtccgtgtgtgtgtgtgtggcactgTATGCATCAGTGTTTTAGTGGCttttacagtatgtatgtatgatttGGTTTCCTAGAAGAAACTAGGCAATATCGAAAGAGCGAACCATGAATCTGTTGGAAAGAGGGAGTTCTTGTTTCCTccacatgttttatttagtgccatgtaaaatcatgcccttgaTTTTTAGATTCAAGCACAGTATTTGTTATATCCACCACAGAATGAGATTGCAGCCTGATTGTGTGCCACGGAAGagatttaaaagtaataaataacaaacaaattgCCACTGAGGAGGTGAATAGTAGCGacagtgtatatttaaacaACCGCATAAGCGATCAGAGGCGGTGCTGACAAAGCTTTTTAATAGTTCTTATGTCATCTGTATGTCATATATTGGGTTACTGACTCAGAAAGATAAGTCAGACAGTGTTTTTTGGCCCAGAGCTCTTTTCAGCCTGTCTTCTCTCGGGAGATTCATTTAGTCAGTGAAACTGCACTGAAATGGCTGCTCTAGTCTACACCTTGCTTCCCATCAGTGGCAAGAAAATATCCAGCCagcttgttttcattaatcTTTTCTTGATAAAGCAATGTGGGATGACTAAGATGTGATGTGGTTTTAATAATTGAGTATTTTTAGTAGCGTCCAAACAATGGGTCCAGTATCTGCAATGCTAGTATTCATACAAACCAAAGgctataatgtacatttttgcacaCCAAGCTTTGTCATCATGAATAGTTATCTAATGTAGTTTTAACACTAAAATGGACAAACTGTGTGGCTTTATTCTGGGACTATTTTggtctgtttctttttgtttcgaTTTGTTGTCTTTTCTGAAGGTACTTTTATTTGTGCGTATATGCAGAATAAGGCAGTCTGTCTCCAGATTCACatgcttggttttttttttgtttgttttttttgcacctgCATTTGCAGACAGTGATGAAAAAGTGATACAGAGGAATTGCCAAATGAATTTACTAAAAAAGCAGGATATTAATCAGTGTTGTAAGACAATGAGTCACTCTGTAAATAGGTAGAACGGCCTAGTTTAGGGTGAGGAAAAACAAGACTGGGTGCTTTACCTTAGTCACACTATAGCAGTTCTTAGGGTATACTTGTCTCTAGAGGGAGTTGCTACACACTTTACAGCCTTTAATCAAGGGACATGGTTGGTTTTCTTTAAACTGTGACAATTCTGTAGTTCAGGTTTGTCAGCTGCAAATAAGAACAAAGCactatttaatttgaaatgttgaaatacACAAAGTGGTAACAGGATTCATTTCATTGCAAAATAATTTCATGTCTTAAgtgattatttcagtttttttttttttttttttttttaatttaagctgTGTTTGTGTCGACTCTGGAGAAATATCAGACACCATGTATCTTCCAATTTTGTATCTAAATCTAACAATATTCTTTTGTACAcaattaaaatatgtctttaaaCCATTTA

Function

symbol description
rras Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Acts upstream of or within Notch signaling pathway and maintenance of epithelial cell apical/basal polarity. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in hindbrain and somite. Orthologous to human RRAS (RAS related).

NR:

description
PREDICTED: ras-related protein R-Ras isoform X1

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0045199 maintenance of epithelial cell apical/basal polarity biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07829 RRAS; Ras-related protein R-Ras

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235433.1 True 2525 mRNA 0.41 7 12019174 12023434

Neighbor

gene id symbol gene type direction distance location
si:ch211-195b15.8 LOC107658488,LOC107729553,LOC107689670,LOC107554105,LOC107730733,LOC107583083 coding upstream 1162 12015005 ~ 12018012 (+)
ap2a1 ap2a1,LOC107730730,LOC107554102,LOC107729492,LOC107658487,LOC107583017 coding upstream 5634 11995095 ~ 12013540 (+)
LOC122333296 NA coding upstream 33069 11984546 ~ 11986105 (+)
LOC122329533 NA coding upstream 37174 11979763 ~ 11982000 (+)
prl LOC107730739,LOC107554085,LOC107689711,LOC107658486 coding upstream 40116 11976888 ~ 11979058 (+)
prrg2 LOC107730734,LOC107583014,LOC107554111,LOC107729459 coding downstream 753 12024187 ~ 12026934 (+)
LOC122342085 LOC107729420,LOC107730741,LOC107554113,LOC107689667 coding downstream 36697 12060131 ~ 12061530 (+)
scaf1 LOC107729496,LOC107658492,LOC107583012,LOC107730764,LOC107554099 coding downstream 38657 12062091 ~ 12072150 (+)
trpm4a trpm4a,LOC107730751,LOC107689664,LOC107554101,LOC107729419,LOC107583009 coding downstream 51707 12075141 ~ 12090205 (+)
LOC122342107 nosip,LOC107583007,LOC107658495,LOC107729514,LOC107730754,LOC107554107 coding downstream 75472 12098906 ~ 12102932 (+)
G19208 NA non-coding upstream 45168 11967648 ~ 11974006 (+)
LOC122338225 NA non-coding upstream 183921 11834772 ~ 11835253 (+)
G19184 NA non-coding upstream 299595 11712609 ~ 11719579 (+)
G19126 NA non-coding upstream 577836 11440506 ~ 11441338 (+)
G19123 NA non-coding upstream 581977 11436944 ~ 11437197 (+)
G19255 NA non-coding downstream 49285 12072719 ~ 12073073 (+)
G19257 NA non-coding downstream 50797 12074231 ~ 12074503 (+)
G19263 NA non-coding downstream 95104 12118538 ~ 12118775 (+)
G19274 NA non-coding downstream 109195 12132629 ~ 12134957 (+)
G19287 NA non-coding downstream 204501 12227935 ~ 12228520 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other upstream 125518 11885655 ~ 11893656 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other upstream 185250 11773200 ~ 11833924 (+)
G18949 NA other upstream 649422 11368893 ~ 11369752 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other upstream 683349 11333741 ~ 11335825 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 1176667 10752759 ~ 10842507 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 3715 12027149 ~ 12049422 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other downstream 69169 12092603 ~ 12100852 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other downstream 90614 12114048 ~ 12117939 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other downstream 208993 12232427 ~ 12249997 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other downstream 279930 12303364 ~ 12315046 (+)

Expression


Co-expression Network