Fish Transcriptome and Expression Database

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model fish

XLOC_006848 (BX324188.2)

Basic Information

Item	Value
gene id	XLOC_006848
gene name	BX324188.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	39242555 ~ 39242672 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013170
TGATACGTGCCATCTTACCCTGCAGCTCAAGAGTGGTTACTCcctgaagttaagcagggctgagcctggtcagaacctggatgggagaccacatgagaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000083238

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00013170	True	118	rRNA	0.51	1	39242555	39242672

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006847	col9a1b	coding	downstream	82537	39119460 ~ 39160018 (-)
XLOC_006845	BX323574.2	coding	downstream	371754	38798045 ~ 38870801 (-)
XLOC_006846	BX323574.1	coding	downstream	389303	38853137 ~ 38853252 (-)
XLOC_006844	lmbrd1	coding	downstream	450494	38621517 ~ 38792061 (-)
XLOC_006843	NA	coding	downstream	622836	38613225 ~ 38619719 (-)
XLOC_006849	slc35f3b	coding	upstream	103626	39346298 ~ 39399967 (-)
XLOC_006850	NA	coding	upstream	256920	39499592 ~ 39504493 (-)
XLOC_006851	zgc:171482	coding	upstream	413938	39656610 ~ 39830999 (-)
XLOC_006852	sfrp5	coding	upstream	668879	39911551 ~ 39947335 (-)
XLOC_006853	crtac1b	coding	upstream	821809	40064481 ~ 40141630 (-)
XLOC_006471	BX537274.2	misc	downstream	28977650	10264741 ~ 10264905 (-)
XLOC_006338	rn7sk	misc	downstream	38416330	825904 ~ 826225 (-)
XLOC_006842	NA	non-coding	downstream	1047341	38190521 ~ 38195214 (-)
XLOC_006836	NA	non-coding	downstream	1605957	37632626 ~ 37636598 (-)
XLOC_006829	NA	non-coding	downstream	1706770	37528161 ~ 37535785 (-)
XLOC_006859	NA	non-coding	upstream	1175644	40418316 ~ 40419308 (-)
XLOC_006863	NA	non-coding	upstream	1719063	40961735 ~ 40977410 (-)
XLOC_006864	NA	non-coding	upstream	1769160	41011832 ~ 41114062 (-)
XLOC_006866	BX548002.1	non-coding	upstream	1987621	41230293 ~ 41230409 (-)

Expression

Co-expression Network