cdc27 (cdc27,LOC107740649,LOC107754304)


Basic Information

Item Value
gene id cdc27
gene name cdc27,LOC107740649,LOC107754304
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21783456 ~ 21795403 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235446.1
CCGATAACGGTTGGAATGTTCAAATCTTCGATGCTAGTTTTGCTACTTCTGGCCTGGAGTGGATACTGAGCTAAGAAAGCGACTGAAGAAGGAgcaaagaaaccaaaaaaggAGGTGAAGAGGAGCCTGGCTACGGAATGACGGTGTTGCAGGAACCTGTCCAGGCTGCTGTCTGGCATGCTCTGAACCACTACGCCTACCGAGATGCAGTATTCCTGGCAGAGAGACTCTATGCTGAGGTCCATTCAGAAGAAGCGCTGTTTCTGCTGGCTACGTGCTACTACCGTTCAGGGAAGGCTTATAAGGCCTACCACCTCCTGAAAGGACACAGCTGCACCACCCCACAATGCAAATACCTCCTCGCCAAGTGCTGTGTGGAACTGAGCAAATTGGCAGAGGGAGAGCAGATCATGACCGGAGGGGTCCTGAACAAACAGAAGAGCCAAGACGACATTATTACTGAGTTTGGCGACTCGGCCTGCTTTACTCTGGCACTGCTGGGGCAAATCTACTGCAAAACGGATCGGATAGCAAAAGGAGCTGAATGTTACCAAAAAAGCATGAGCGAGAACCCTTTCTTATGGTCTCCATTTGAGTCTCTGTGTCAAATCGGGGAGCGACCGGATCCAGAGCAGATATTTAGATTGACCTCCTTGCAGAATTTCAGTGGAGGCAGCGGAGGAGTCGTCCCCCCTCCTCCCATCAGCCCCGCACACACACCTAGTAACAACATGGGACACAGACAAGTTGACACCGTCCTAATGGAAACCCCACAGGACACTTTGGAGCTGAACCGGCTCAATCTAGAGTCTTCGAACTCAAAATACTCCCTAAATACGGACTCTTCTGTGTCCTACATCGACTCCTCTGTCATCTCGCCCGACTCTGTGCCACTGGGCACCGGTGGCTCACTATTGTCCAAACAAGTgcaaaacaaacccaaaagcGGCCGATGTCTGCTGGGGGGCACGGCCACACTTAGCCCTCTCACACCAAGTTTTGGAATTTTGCCCCTTGAGCCGAGCCCGGGTGACCCAACATACCTACAGAATTACAGTCACAGTGGAAGTGGGATGGAACCTCCTCCTCCGCCTGGTCCTCCGAAGAAGGCCGTCAGTAGAATCAGCCAAGTGGGAACGAAATCAGTGTTTGCACAGAGTGGAAACAGCAGAGAGGTCATTCCAAACCCTTTCAACCAAACTCAGACCACTGCCCCACAGACCAGTACTACACCGCAAGTGCTGAGCCCAACCATTGCTGCTCCCCCAAACGTGCAGCCGCGGCGGAGCTCAAGACTCTTCACCAGTGCCAGCTCCACTGCCAAGGAAAACAGTAAGAAGCTGAAAATGAAGTTCCCCACCAAGATTCCCAATCGAAAGACCAAAACGAAAACGGGTAAGGGAGGAATCACCCCATCTAACCTGAATGAGAGCATCGAGATCCTCAAGCTTGATTCTTCTATATCGGAAGGAAAAGGCAACATCAGCTCACCACAGTTCCAGGCTTTTAATCTACAAAAGGCTGCTGCGGATGGGCTGATGACGTTGATGCGGGATATTGGGAGGGGCTATCTTGCTCTCTGTTCTTACAACTGCAGAGAAGCCATTAACATCTTGAGTCAGCTGCCTTCACACCACTACAACACAGGATGGGTGCTGGGACAGATCGGACGTGCTCACTTTGAGTTGGCTGAATACATGCAGGCGGAGAGGATATTCTCGGAGGTCCGGCGTATAGAGAGCTATCGAGTGGAAGGTATGGAGATCTATTCTACAACACTCTGGCATTTACAGAAGGATGTGGCACTTTCCGCCCTATCTAAAGATCTCACCGACATGGACAAAAACTCACCAGAGCCCTGGTGTGTAGCTGGTAACTGTTTCAGCTTACAGCGGGAACACGACATAGCCATTAAGTTCTTTACAAGGGCCATCCAGGTGGACCCCAGCTTTGCGTACGCATACACCCTATTAGGGCATGAACTAGTTCTCACAGAAGAGCTGGAGAAAGCCCTGGGCTGCTTCCGCAATGCTATACGCCTCAATAAACGTCACTACAATGCCTGGTACGGCTTGGGAATGATTTACTACAAGCAGGAAAAATTTAACCTAGCCGAGATTCATTTCAAGAAGGCTTTGAGCATCAATCCTCAGAGCTCTGTGCTGCTTTGTCATATTGGAGTGGTTCAACATGCTTTGAAAAAATCAGACCATGCACTGGAGACCCTCAACAGAGCCATTAGCATCGACCCCAAGAACCCGCTATGCAAATTCCATAGGGCCTCTATTCTCTTTGCCAATGAAAAGTATAAGGCGGCTTTGCAGGAGCTTGAAGAGCTGAAACAAATAGTGCCCAAAGAGTCCCTTGTTTACTTCTTAATAGGAAAGGTCTATAAGAAGCTTGGCCAGACTCATCTGGCACTAATGAACTTTTCTTGGGCCATGGACTTGGACCCTAAAGGGGCCAATAATCAGATCAAAGAGGCCATAGATAAGCGATACCTCCCAGATGATGACGAACCCGTCACGCCTGATGACTATCCCTACTACTCAACAGCTGAGGTGGAGGAGTCACAGGAGAGCAGTATGACAGACGCTGATGACACGCAGCTCCACACCACGGAGAGCGATGAGGTTCTGTAGCCCCCGACACCACTCTGGACTTTGAAACAATGCCAATCTAGGGGCTACTTGAAGACTTCAGCTCTGAAAaaggaggaagaagaaaaaaaggaaaacaaactgCTGCTAATAACAGTACCTCCTCATTTCTGTCGTTTTATTTTCGTCATTCGTTCTTGCCTTTTTCCACCCCCTCGTCATCATGCCTTAGAGGTCTCTCATCGGTCTGATCTTCTGGTCCTGTCTCATCCCTCATCGTACCTGGCAGGCATCCCTAACTGCAGACAGAACTCAAGTTCTGCCTGAGCCCAGATTTGCCAATGACCCCACTGTCTTCTCAGCAAGTTAATTGTCAGTTGAAGACTCAAAACAGGGCCACAGACGTTCATGGATGTTCCTGTCTTAATGCTTAGgccttttatgttattttatcgGCATTTACTTTGAATAAAGACCTGTGTAAGAGTTGGTAGTCCTTTGATTCCTCTCCCCTCCCTTTTTCATCGTGGAACGTAATTGCTGGGAGAAAAAAAGCACTTTCTGCCCACATCAAAAAAGCGTTTGGCAGTAGAGATTCAATGTAAACTGCATATCTTCTATCAGATTACCATCTGTTTAGAAGAACAGTGTTTTTGAGAGTTAACTAGTTCTGGATGAAGCAgatctttttccattttgaaacTTGTGTGTGACTGATGCTTAAGCacttatgtttaaaaaaaaaaaattgtcttaatCTGAAGAATTCGACACTCGCTCTCATCTGTTCAGTTCTTATCTACCTTCAAAACATCCATGTGTTTTGCCCAGCTGCAAGACATTGATTAGATTTAATGATAAGCGTATAGGTGGGGTGGTTTCCTTGACACACTTTCATCTGTGTTTAGGACACCAGACCATGATGTCCAAATTAACAACACTATTGTATGGCACAGTGACCAGTGGTCAGACTACTTGAGacaattttctgaaatgttggTGCTGTTGAGGACAATACTGATGAACATAGAAAATGTGCACAAAGTATCTTTCATGGATTTTATTTTACCAGaacatgtttattataaaatgtttttgatctcTGCTAAATGCTtcttattgtacattttaaggaATTAAAAGGTAATAGAATAAACAACTTTGACTGAAA
>XM_043235447.1
CCGATAACGGTTGGAATGTTCAAATCTTCGATGCTAGTTTTGCTACTTCTGGCCTGGAGTGGATACTGAGCTAAGAAAGCGACTGAAGAAGGAgcaaagaaaccaaaaaaggAGGTGAAGAGGAGCCTGGCTACGGAATGACGGTGTTGCAGGAACCTGTCCAGGCTGCTGTCTGGCATGCTCTGAACCACTACGCCTACCGAGATGCAGTATTCCTGGCAGAGAGACTCTATGCTGAGGTCCATTCAGAAGAAGCGCTGTTTCTGCTGGCTACGTGCTACTACCGTTCAGGGAAGGCTTATAAGGCCTACCACCTCCTGAAAGGACACAGCTGCACCACCCCACAATGCAAATACCTCCTCGCCAAGTGCTGTGTGGAACTGAGCAAATTGGCAGAGGGAGAGCAGATCATGACCGGAGGGGTCCTGAACAAACAGAAGAGCCAAGACGACATTATTACTGAGTTTGGCGACTCGGCCTGCTTTACTCTGGCACTGCTGGGGCAAATCTACTGCAAAACGGATCGGATAGCAAAAGGAGCTGAATGTTACCAAAAAAGCATGAGCGAGAACCCTTTCTTATGGTCTCCATTTGAGTCTCTGTGTCAAATCGGGGAGCGACCGGATCCAGAGCAGATATTTAGATTGACCTCCTTGCAGAATTTCAGTGGAGGCAGCGGAGGAGTCGTCCCCCCTCCTCCCATCAGCCCCGCACACACACCTAGTAACAACATGGGACACAGACAAGTTGACACCGTCCTAATGGAAACCCCACAGGACACTTTGGAGCTGAACCGGCTCAATCTAGAGTCTTCGAACTCAAAATACTCCCTAAATACGGACTCTTCTGTGTCCTACATCGACTCCTCTGTCATCTCGCCCGACTCTGTGCCACTGGGCACCGGTGGCTCACTATTGTCCAAACAAGTgcaaaacaaacccaaaagcGGCCGATGTCTGCTGGGGGGCACGGCCACACTTAGCCCTCTCACACCAAGTTTTGGAATTTTGCCCCTTGAGCCGAGCCCGGGTGACCCAACATACCTACAGAATTACAGTCACAGTGGAAGTGGGATGGAACCTCCTCCTCCGCCTGGTCCTCCGAAGAAGGCCGTCAGTAGAATCAGCCAAGTGGGAACGAAATCAGTGTTTGCACAGAGTGGAAACAGCAGAGAGGTCATTCCAAACCCTTTCAACCAAACTCAGACCACTGCCCCACAGACCAGTACTACACCGCAAGTGCTGAGCCCAACCATTGCTGCTCCCCCAAACGTGCAGCCGCGGCGGAGCTCAAGACTCTTCACCAGTGCCAGCTCCACTGCCAAGGAAAACAGTAAGAAGCTGAAAATGAAGTTCCCCACCAAGATTCCCAATCGAAAGACCAAAACGAAAACGGGTAAGGGAGGAATCACCCCATCTAACCTGAATGAGAGCATCGAGATCCTCAAGCTTGATTCTTCTATATCGGAAGGAAAAGGCAACATCAGCTCACCACAGTTCCAGGCTTTTAATCTACAAAAGGCTGCTGCGGATGGGCTGATGACGTTGATGCGGGATATTGGGAGGGGCTATCTTGCTCTCTGTTCTTACAACTGCAGAGAAGCCATTAACATCTTGAGTCAGCTGCCTTCACACCACTACAACACAGGATGGGTGCTGGGACAGATCGGACGTGCTCACTTTGAGTTGGCTGAATACATGCAGGCGGAGAGGATATTCTCGGAGGTCCGGCGTATAGAGAGCTATCGAGTGGAAGGTATGGAGATCTATTCTACAACACTCTGGCATTTACAGAAGGATGTGGCACTTTCCGCCCTATCTAAAGATCTCACCGACATGGACAAAAACTCACCAGAGCCCTGGTGTGTAGCTGGTAACTGTTTCAGCTTACAGCGGGAACACGACATAGCCATTAAGTTCTTTACAAGGGCCATCCAGGTGGACCCCAGCTTTGCGTACGCATACACCCTATTAGGGCATGAACTAGTTCTCACAGAAGAGCTGGAGAAAGCCCTGGGCTGCTTCCGCAATGCTATACGCCTCAATAAACGTCACTACAATGCCTGGTACGGCTTGGGAATGATTTACTACAAGCAGGAAAAATTTAACCTAGCCGAGATTCATTTCAAGAAGGCTTTGAGCATCAATCCTCAGAGCTCTGTGCTGCTTTGTCATATTGGAGTGGTTCAACATGCTTTGAAAAAATCAGACCATGCACTGGAGACCCTCAACAGAGCCATTAGCATCGACCCCAAGAACCCGCTATGCAAATTCCATAGGGCCTCTATTCTCTTTGCCAATGAAAAGTATAAGGCGGCTTTGCAGGAGCTTGAAGAGCTGAAACAAATAGTGCCCAAAGAGTCCCTTGTTTACTTCTTAATAGGAAAGGTCTATAAGAAGCTTGGCCAGACTCATCTGGCACTAATGAACTTTTCTTGGGCCATGGACTTGGACCCTAAAGGGGCCAATAATCAGATCAAAGAGGCCATAGATAAGCGATACCTCCCAGATGATGACGAACCCGTCACGCCTGATGACTATCCCTACTACTCAACTGAGGTGGAGGAGTCACAGGAGAGCAGTATGACAGACGCTGATGACACGCAGCTCCACACCACGGAGAGCGATGAGGTTCTGTAGCCCCCGACACCACTCTGGACTTTGAAACAATGCCAATCTAGGGGCTACTTGAAGACTTCAGCTCTGAAAaaggaggaagaagaaaaaaaggaaaacaaactgCTGCTAATAACAGTACCTCCTCATTTCTGTCGTTTTATTTTCGTCATTCGTTCTTGCCTTTTTCCACCCCCTCGTCATCATGCCTTAGAGGTCTCTCATCGGTCTGATCTTCTGGTCCTGTCTCATCCCTCATCGTACCTGGCAGGCATCCCTAACTGCAGACAGAACTCAAGTTCTGCCTGAGCCCAGATTTGCCAATGACCCCACTGTCTTCTCAGCAAGTTAATTGTCAGTTGAAGACTCAAAACAGGGCCACAGACGTTCATGGATGTTCCTGTCTTAATGCTTAGgccttttatgttattttatcgGCATTTACTTTGAATAAAGACCTGTGTAAGAGTTGGTAGTCCTTTGATTCCTCTCCCCTCCCTTTTTCATCGTGGAACGTAATTGCTGGGAGAAAAAAAGCACTTTCTGCCCACATCAAAAAAGCGTTTGGCAGTAGAGATTCAATGTAAACTGCATATCTTCTATCAGATTACCATCTGTTTAGAAGAACAGTGTTTTTGAGAGTTAACTAGTTCTGGATGAAGCAgatctttttccattttgaaacTTGTGTGTGACTGATGCTTAAGCacttatgtttaaaaaaaaaaaattgtcttaatCTGAAGAATTCGACACTCGCTCTCATCTGTTCAGTTCTTATCTACCTTCAAAACATCCATGTGTTTTGCCCAGCTGCAAGACATTGATTAGATTTAATGATAAGCGTATAGGTGGGGTGGTTTCCTTGACACACTTTCATCTGTGTTTAGGACACCAGACCATGATGTCCAAATTAACAACACTATTGTATGGCACAGTGACCAGTGGTCAGACTACTTGAGacaattttctgaaatgttggTGCTGTTGAGGACAATACTGATGAACATAGAAAATGTGCACAAAGTATCTTTCATGGATTTTATTTTACCAGaacatgtttattataaaatgtttttgatctcTGCTAAATGCTtcttattgtacattttaaggaATTAAAAGGTAATAGAATAAACAACTTTGACTGAAA

Function

symbol description
cdc27 Predicted to be involved in cell division; cellular protein metabolic process; and regulation of mitotic sister chromatid separation. Predicted to be part of anaphase-promoting complex. Predicted to be active in cytoplasm. Orthologous to human CDC27 (cell division cycle 27).

NR:

description
cell division cycle protein 27 homolog isoform X2

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process

KEGG:

id description
K03350 APC3, CDC27; anaphase-promoting complex subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235446.1 True 3771 mRNA 0.47 19 21783456 21795403
XM_043235447.1 False 3768 mRNA 0.47 19 21783456 21795403

Neighbor

gene id symbol gene type direction distance location
LOC122341350 LOC107738996 coding upstream 332747 21447171 ~ 21450709 (+)
LOC122340007 LOC107710878,LOC107678868,LOC107725047,LOC107590786,LOC107582907,LOC107684649 coding upstream 338715 21441922 ~ 21444741 (+)
LOC122341349 LOC107725047,LOC107590786,LOC107678868,LOC107710878,LOC107684649,LOC107582907,LOC107725048,LOC107684648 coding upstream 345501 21429682 ~ 21437955 (+)
LOC122337825 LOC107590788,LOC107684637,LOC107710882,LOC107678872 coding upstream 380338 21389147 ~ 21403118 (+)
LOC122337169 LOC107731852,LOC107571197 coding upstream 417302 21363439 ~ 21366154 (+)
kansl1b LOC107740647,LOC107662409,LOC107754301,LOC107694965 coding downstream 1617 21797020 ~ 21842872 (+)
scn4ab scn4ab,LOC107754300,LOC107683681,LOC107582874 coding downstream 103903 21899306 ~ 21918705 (+)
gh1 LOC107585059,LOC107740644,LOC107662423 coding downstream 129086 21924489 ~ 21926112 (+)
rdm1 zgc:103564,LOC107585100,LOC107662434,LOC107740678 coding downstream 131463 21926866 ~ 21929640 (+)
ifnphi3 LOC107579891,LOC107579948 coding downstream 137841 21933244 ~ 21934233 (+)
G22201 NA non-coding upstream 49034 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 146886 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 147377 21635744 ~ 21636079 (+)
G22094 tcap,LOC107684635,LOC107590785,LOC107582871,LOC107727457,LOC107694957 non-coding upstream 289958 21345129 ~ 21493498 (+)
G22084 LOC107684649,LOC107590786,LOC107725047,LOC107582907,LOC107678868,LOC107710878 non-coding upstream 400332 21381808 ~ 21383124 (+)
LOC122341843 NA non-coding downstream 240479 22035882 ~ 22089931 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding downstream 716025 22511428 ~ 22672911 (+)
G22554 ddx5,LOC107695114 non-coding downstream 1144844 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 1294070 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 1305541 23100944 ~ 23148618 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other upstream 49329 21637743 ~ 21734127 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other upstream 369170 21295702 ~ 21414286 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other upstream 826882 20882198 ~ 20956574 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 1587735 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 1669958 20094851 ~ 20113498 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 179849 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 181106 21976509 ~ 22025911 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other downstream 473583 22268986 ~ 22336227 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other downstream 733586 22528989 ~ 22530060 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other downstream 750755 22546158 ~ 22547208 (+)

Expression


Co-expression Network