copz2 (LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483,LOC106600844)


Basic Information

Item Value
gene id copz2
gene name LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483,LOC106600844
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23103757 ~ 23114098 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235459.1
GATGGCGGCTCAAGGGCTGTAGTTGCAGACACGCCCCCTGTGAGTCAGAGGGTTTTAGGAGCGCTACTGTAATGACAGCTCAAAGCTGTCCACGTCAACACTGTGCTACCACCATGGACTCCGCGGCTCTGgAACCCTCGCTCTACACTGTGAAAGCGGTCTTCATCTTAGACAACGATGGAAACAGACTGCTTTCAAAGTACTATGATCCAGAGCTCTATCCCTCAATGAAAGAGCAGAAGAATTTTGAAAAGAATGTATTCAACAAAACACATAAAGCCGACAATGAAATTGCCTTCTTGGAGGGAATGACGATAGTCTACAAGAGCAGCATAGACTTGTTCTTCTATGTAGTCGGCAGCGCTCAGGAGAATGAGCTCATGCTGATggcggtgttgaactgcttgttTGAGACTCTCAGTCAGATGTTGAGGAAGAATGTGGAGAAAAGGACTCTGCTGGATAATATGGACGGAGTGTTCCTGGTGGTGGATGAAATCATCGACGGAGGGGTGATCCTGGAGAGTGACCCCCAGCAGGTCATTGAAATCAACTACAGGGCAGATGACAGCCCATTATCAGAACAGAGCGTGGCACAGCACATCACTGAAAAACTGGCTCTCACTTCTAATgtgttACAGTCAGCAAAGGAGCAGATCAAGTGGtcaattctgaaataatattttccatCACCTCTGAAGGAATCTGTAAATTATTGCAAGGGAATTtcgtttttttactttaatgagttgtaatttaattaattaatggaGTAGTGTACATGGGTAGTTGCATCTCATATTTAGtgatgatatatttatatattttttaaagagtaaATTAGGTCatttgtgtttggttttttttttgttaatgatataaaaaggcatatTTGCTCACTGGGCTCTGTACCAAATATCAACCAATACATACCTATGtcaaaagcagctttaaaggaattgcaattaattttagCCTCTACAAATATTGATATATTCCTGTTCTGTTGAAAGGAGGTACggctattttttcttttaacaaagaCTCTCATTTAAATGGTcacatcagaaatgttttgtcTAAACTTGTCTTTTATCAGttttggtatttttgttttgctttacaaaaaaatgttgtcaaaaaataattaacaaagttCTGTTACACTAGgccaatatataaatattttgctatatatgtgtttttttttaatgagggaAGGGCAATATTGTGCAATTGATATGAGTAGGTTACAGGCACTAAGATTATAATATAGTCCACTACAACAATAATAAGTGTCTGAAAAGCCACAACTATAGGTTAGATGTATGAAAAGTagcattaaaaaagtttaaaaataatttattttgttttaggtaTGCTatacaaaattaacatttccaTACATTtgattttctaataaaataaactgtgtaGTGTGttgtttaagttttaaaaaccATGGTTCAGGAAATACTTGCGCACAAAAATGTCacttaaaactaataaatgttcttttttttgta

Function

NR:

description
PREDICTED: coatomer subunit zeta-1-like isoform X2

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20472 COPZ, RET3; coatomer subunit zeta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235459.1 True 1526 mRNA 0.36 11 23103757 23114098

Neighbor

gene id symbol gene type direction distance location
cbx1a cbx1a,LOC107585039,LOC107662389,LOC107687782,LOC107710057,LOC107582894 coding upstream 12821 23084146 ~ 23090936 (+)
LOC122342153 c1qtnf6,c1qtnf6a,LOC107695119,LOC107723613,LOC107672153,LOC107583300 coding upstream 184796 22912566 ~ 22918961 (+)
hoxb1a LOC107687776,LOC107585038,LOC107717202,LOC107740618,LOC107662382,LOC107582890 coding upstream 320662 22779834 ~ 22783095 (+)
hoxb3a hoxb3a,LOC107687775,LOC107582888,LOC107740615,LOC107717222,LOC107662380,LOC107585040 coding upstream 338221 22713873 ~ 22765536 (+)
LOC122333434 LOC107710041,LOC107740651,LOC107585073,LOC107662378,LOC107687794 coding downstream 14686 23128784 ~ 23135038 (+)
atf4b atf4b,LOC107585034,LOC107740611,LOC107710053,LOC107662376,LOC107656792,LOC107582897 coding downstream 50264 23164362 ~ 23167244 (+)
LOC122341905 adsl coding downstream 57506 23171604 ~ 23181066 (+)
LOC122341904 adsl coding downstream 70750 23184848 ~ 23192889 (+)
tmem150b tmem150b,LOC107662375 coding downstream 78932 23193030 ~ 23197094 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding upstream 8335 23089473 ~ 23095422 (+)
G22554 ddx5,LOC107695114 non-coding upstream 75252 22940247 ~ 23028505 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding upstream 430846 22511428 ~ 22672911 (+)
LOC122341843 NA non-coding upstream 1013826 22035882 ~ 22089931 (+)
G22201 NA non-coding upstream 1369335 21734138 ~ 21734422 (+)
G22584 NA non-coding downstream 180 23114278 ~ 23116840 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding downstream 282403 23396501 ~ 23400922 (+)
LOC122341920 LOC107672134,LOC107602299 non-coding downstream 298715 23412813 ~ 23414909 (+)
G22754 NA non-coding downstream 448942 23563040 ~ 23563246 (+)
G22757 NA non-coding downstream 460800 23574898 ~ 23578241 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other upstream 195622 22899333 ~ 22908135 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other upstream 333155 22765647 ~ 22770602 (+)
hoxb5a hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619 other upstream 377599 22722022 ~ 22726158 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other upstream 556549 22546158 ~ 22547208 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other upstream 573697 22528989 ~ 22530060 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other downstream 44121 23158219 ~ 23163716 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other downstream 224281 23338379 ~ 23343640 (+)
LOC122341898 LOC107662363 other downstream 229866 23343964 ~ 23361942 (+)
LOC122341907 NA other downstream 289343 23403441 ~ 23408814 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other downstream 310523 23424621 ~ 23431766 (+)

Expression


Co-expression Network