LOC122341820 (LOC107583052,LOC107729535,LOC107658457,LOC107732863,LOC107674145,LOC100534815)


Basic Information

Item Value
gene id LOC122341820
gene name LOC107583052,LOC107729535,LOC107658457,LOC107732863,LOC107674145,LOC100534815
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11449629 ~ 11451443 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235466.1
tttttttccctgtcagCATTGGAGGGGAAAGAAGGGGACACGCCTGTGTTTGTCAAGcaggtgtttgtgtgtctaCTAGTGTTTCTGTCATTCACCCACCACTTTGTTCATCTACGCTGAAACAGAGGAGCAGCAAACCCTCAATTCTCTCAGCAGCAGAAGCCTCTCTTACTAGCAGAGCCCCACAGAAGCAGTGACAACATGCAGAACGCAGAAGCCGTGTCAGCAACTATAAACACTAATAGGAACTGTACAGTGGAGATCAGCAATGTTAGCGGTGCTTACTGCCTTATCAATCCAAAAGTGTACATGTCCAGTGGTTTCAGTTATCATCCACCCCAACCCACCATCCGCACCACCAGGACCGAGGTTTGCTCATTCACTAAAGATGACAACACTGCCACCGGGGCTGTGGGTATCTTGACCTATGACCTCTTCCACATGCAAAACCGTATGTGCACTGAGCGTATGGCCGTTCTGTTCTCTATCCCCTTCGACTACCACCTCTACAAGAACGTGATGGGCATTGGGTTATTTGAAAGCAGCCGTGGATGTGACAAGGCCCTGTACAAGCACATGTATGAGGGGAAGGACTTCAGCCAGTTCACCCGTGCAGATGCGGGGGGAACTGGAATCATACACAGAGGAAAGAAAATAGACTTAAGGGCCACCATGTCTACTGTGGGCAAGGCTATTATTAAGCTAGAGGTCTATGACAAGATGGGCTAAACAAATTTTGTCTGACAATAACAGTACACACcctttttttataatcttaATCATCATAAGatattaaatgtcataataCAAATGCCATTGTGCTTTCAAATGTTGAAGCATGTCTGTATTAATACCTGCCCatttttctgataaaaaaatctcaaaatgtgtctaaataaaaagactgttttgaaaa

Function

NR:

description
PREDICTED: bryoporin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235466.1 True 916 mRNA 0.44 3 11449629 11451443

Neighbor

gene id symbol gene type direction distance location
apnl apnl,LOC107658456,LOC107583051,LOC107729534,LOC107732855,LOC107564020 coding downstream 1926 11445525 ~ 11447703 (-)
LOC122341818 coq7,LOC107658455,LOC107583049,LOC107729533,LOC107581445,LOC107677563,LOC107740598,LOC106564609,LOC102792864 coding downstream 8321 11437587 ~ 11441308 (-)
LOC122342175 itpripl2,LOC107729564,LOC107583043,LOC107674135,LOC107564006,LOC107658454,LOC107732846 coding downstream 14568 11431783 ~ 11435061 (-)
smg1 smg1,LOC107729485,LOC107564004,LOC107658410 coding downstream 46530 11376189 ~ 11403099 (-)
arl6ip1 arl6ip1,LOC107658451,LOC107674170,LOC107732869 coding downstream 74260 11370068 ~ 11375369 (-)
moto LOC107729445,LOC107658460,LOC107583041,LOC107674174,LOC107721968 coding upstream 145797 11597240 ~ 11602381 (-)
ccdc47 ccdc47,LOC107721963,LOC107674171,LOC107729550,LOC107658463 coding upstream 181978 11633421 ~ 11640057 (-)
kcnh6a kcnh6a,LOC107583039,LOC107658465,LOC107674162,LOC107570755,LOC107721966 coding upstream 194455 11645898 ~ 11676327 (-)
LOC122330909 gfap,LOC107729544,LOC107721967,LOC107658466 coding upstream 229907 11681350 ~ 11688119 (-)
ddx42 ddx42,LOC107583038,LOC107658468,LOC107729497,LOC107730759,LOC107693495,LOC107548322 coding upstream 280550 11731993 ~ 11739714 (-)
G19117 NA non-coding downstream 38913 11410335 ~ 11410716 (-)
G19108 NA non-coding downstream 113829 11333756 ~ 11335800 (-)
G19019 LOC107561356,LOC107680886,LOC107732897,LOC107551139,LOC107729558,LOC108434911,LOC107687643 non-coding downstream 680231 10767300 ~ 10769398 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding downstream 752090 10689164 ~ 10697539 (-)
G19375 NA non-coding upstream 318279 11769722 ~ 11771648 (-)
G19381 NA non-coding upstream 392571 11844014 ~ 11844199 (-)
G19385 NA non-coding upstream 415564 11867007 ~ 11871906 (-)
LOC122330904 NA non-coding upstream 517151 11968594 ~ 11975569 (-)
G19422 NA non-coding upstream 568140 12019583 ~ 12023427 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 20450 11411985 ~ 11429179 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other downstream 385031 11011936 ~ 11064598 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other downstream 1053288 10394314 ~ 10396341 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other downstream 1239013 9993833 ~ 10210616 (-)
G18433 LOC107670519,LOC107563315 other downstream 1986724 9426572 ~ 9462905 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 242829 11694272 ~ 11714719 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other upstream 261377 11712820 ~ 11728001 (-)
G19383 NA other upstream 402305 11853748 ~ 11880959 (-)
LOC122341756 NA other upstream 458332 11909775 ~ 11920767 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 887744 12339187 ~ 12343872 (-)

Expression


Co-expression Network