hoxb13a (hoxb13a,LOC107687788,LOC107662424,LOC107585093,LOC107717198,LOC107740673,LOC107582955)


Basic Information

Item Value
gene id hoxb13a
gene name hoxb13a,LOC107687788,LOC107662424,LOC107585093,LOC107717198,LOC107740673,LOC107582955
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22673476 ~ 22675120 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235467.1
CGTGCTATGACCACCTCCCTGGTCCTGAATCCTCGCTGGGCGGACACGGTTATGTTTGTGTATGAAAACAACTTGGATGAGCTGAAGAACATGGAGGGTCTGGTTGGAAGCGGCAATTTTGCGGCCAACCAGTGCAGGAATCTGATGGCCCACTCGGCTCTGAGTGGCCACCCGTCCAGCCTCGTCCACGGCTCCAGCTATCCCTCCGTGGACGTATCGACCTCAGGTTCCACAGAGTCGGGCAAGCAGTGCGCACCTTGCCCGACGGTTCCTCAGGCCTCGTCCACCGGTCCCATCCCGTACGGCTATTTTGGCAACAGCTATTATCCTTGCAGAATGGGGCGGGGTTCCCTCAAGTCCTGCACGCAGCCGAGCGCGCTCAGCTACACTGCGGAGAAATACATGGATACCCCGGTCACATCCGAAGAATATCCTAGCAGGGCTAAAGAGTTCGCCTTTTACCACAGCTACCCCAGTCCCTACCAGTCCATGGCCAGCTATTTGGACGTGTCGGTGGTACAGACGCTCGGAAGCGGAGAGCCGCGACACGACAGTCTCCTGCCTATGGATAGCTACCAACCCTGGGCTCTGGCGAACGGATGGGGCAGTCAGATGTATTGTTCCAAGGACCAGAGCCAGGCGGGCCATCTCTGGAAGTCTGCGTTAGCAGATGTCGTGGCCCACCAACATGACGGGGGCTCATTCCGTCGAGGTAGAAAGAAGCGGATACCGTACACAAAAGTACAGCTCAAGGAACTGGAGAAAGAATACGCGGCCAACAAATTCATCACAAAGGACAAGAGGAGAAAGATTTCGGCGGTAACCAACTTGTCCGAGCGTCAGATCACTATCTGGTTTCAAAACAGGAGGGTTAAGGAAAAGAAATTCATCGCCAAAGTTAAGAACAGCGCGCCGTAGCGCAGAGCCCAATCTTTGTTTTTCTCGGTGACTTGAAATACAGAGAAGCAAAAAGTCGTCGCGAGGACTTTTCTTGGACTGGAACTGAATGTTCTCTTTGCCCAGCGCATTTacaccaaacaaataaaaggaTGGACTCGAAAAATGAATAAtctaaatgaaatggaaaaaaaaaacgtggaaGGACAATATAGCTTGTAAATTACGCACGTGCCTGCCTACATGTAACTGTGTTCGTTTAAAGTCTCTCTGTCCTCTTTAGCTTGCATTTAATGTTAGGTACGTCAGTGtcgttgctgttgttgttgtattaGTCGTGTAGCTTATTACCCAATATCTGTCAGTACTTATATACTATGTTTATATCGCTTGTAAAACACAA

Function

symbol description
hoxb13a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in ductal carcinoma in situ and renal cell carcinoma. Orthologous to human HOXB13 (homeobox B13).

NR:

description
PREDICTED: homeobox protein Hox-B13a

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09298 HOX_13; homeobox protein HoxA/C/D13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235467.1 True 1300 mRNA 0.50 2 22673476 22675120

Neighbor

gene id symbol gene type direction distance location
nr1d1 LOC107585045,LOC107740628,LOC107662394,LOC107582883,LOC107667757 coding upstream 97486 22568967 ~ 22575990 (+)
ppp1r9ba ppp1r9b,ppp1r9ba,LOC107740632,LOC107717206,LOC107667750,LOC107582927 coding upstream 182686 22455402 ~ 22490790 (+)
col1a1a LOC107585052,LOC107740634,LOC107582926 coding upstream 223827 22434373 ~ 22449649 (+)
gngt2a NA coding upstream 285991 22384731 ~ 22387485 (+)
LOC122341813 NA coding upstream 290689 22374082 ~ 22382787 (+)
hoxb10a hoxb10a,LOC107662435,LOC107740623,LOC107585092 coding downstream 9893 22685013 ~ 22689691 (+)
hoxb9a hoxb9a,LOC107585091,LOC107662432,LOC107717219,LOC107687790,LOC107582956 coding downstream 16058 22691178 ~ 22699171 (+)
hoxb8a hoxb8a,LOC107662386,LOC107582957,LOC107585089,LOC107740672,LOC107687792,LOC107717220 coding downstream 28804 22703924 ~ 22706737 (+)
hoxb7a hoxb7a,LOC107740671,LOC107662388,LOC107717221,LOC107585088,LOC107687793,LOC107582958 coding downstream 32874 22707994 ~ 22712057 (+)
hoxb3a hoxb3a,LOC107687775,LOC107582888,LOC107740615,LOC107717222,LOC107662380,LOC107585040 coding downstream 38753 22713873 ~ 22765536 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding upstream 565 22511428 ~ 22672911 (+)
LOC122341843 NA non-coding upstream 583545 22035882 ~ 22089931 (+)
G22201 NA non-coding upstream 939054 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 1036906 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 1037397 21635744 ~ 21636079 (+)
G22554 ddx5,LOC107695114 non-coding downstream 265127 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 414353 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 425824 23100944 ~ 23148618 (+)
G22584 NA non-coding downstream 439158 23114278 ~ 23116840 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding downstream 721381 23396501 ~ 23400922 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other upstream 126268 22546158 ~ 22547208 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other upstream 143416 22528989 ~ 22530060 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other upstream 337249 22268986 ~ 22336227 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other upstream 647565 21976509 ~ 22025911 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other upstream 696811 21975252 ~ 21976665 (+)
hoxb5a hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619 other downstream 46902 22722022 ~ 22726158 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other downstream 90527 22765647 ~ 22770602 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other downstream 224213 22899333 ~ 22908135 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other downstream 483099 23158219 ~ 23163716 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other downstream 663259 23338379 ~ 23343640 (+)

Expression


Co-expression Network