cd2bp2 (cd2bp2,LOC107582988,LOC107729467,LOC107554127,LOC107737770,LOC107683307)


Basic Information

Item Value
gene id cd2bp2
gene name cd2bp2,LOC107582988,LOC107729467,LOC107554127,LOC107737770,LOC107683307
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12253858 ~ 12259180 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235469.1
GTCTGTCTCACACGCCTGCACCATGCAGCCCTCCAGAACAATCACACCCAAGAGGTTACGGTCGCCCGGACGCTCCTGATAAAACAGCAGATTCCCCTTCAACACAAACCAGCGGCGCAGGTGGCGATAGAGGCTCGGGCAGAATCCCGCTAATGACGTTCTTCCGGTTTCAGTGTGCTTGAATGGCGCAGCGGGGAGAATAACATCCAGCATGTCGAAAAGGAAAGTGACATTTGAGGATGGAGATGGGGAGATTATTTTGGAAGATGTTCCGAAGAAGAAGATTGTTGATGGTGTGAGTGGCCCAGGATCCAGATTTAAAGAGAAACACTCTTTGGACAGTGATGAGGAAGATGAAGGAGGAGAGGATGGAGAAAATAGCAGCAAATATGACATCCTTGCCAGTGATGATGTGGAAGGTCAGGAAATGGCAACCATTGACTATGACGAGGGTGTACGCATCACCCCTTTTAATCTCGTCGAGGAAATGCAGGAGGGACACTTTGATTCAGAGGGAAACTATTTTGTCAACAAAGAGAAAGATATCAGAGACAACTGGCTGGACAATATCGACTGGGTAAAGATCAAAGAGCAGCctgtgaaaaagaagaaaggccTTGCAGCTAAGAGGAAGAGAAGAATTGGTGATGAAGATGAAGCAGAAGAGGAAATAAAACGTGAAGAGCAGCGGAAAGACAGTGAGGAAGATGAGGAGGTAGAGGAGAAAGTACCTGCAGAAGACCCTCTGGCTACGTACAGCCGTCATCAGCTCACAGAAGCCGTCATTGAGCTGATGCTTCCTGGAGAAACAGTGGCTGCTGCTCTGAGAAGACTGGGCGGTCTTGGaggacaaaagaagaaagggaGACTGAGAGAAGGggaggaggagaaaaaagaGACTTCGAACAGAGACGCTGGTAAACTGGACAAACTGACAGCCTTAGCGGATAGACTGGTGGGGATTGGAGAATTTGAAATTTATCAGCAGACGTATGAAAAACTGGCCTACAAGTTGAAGGGTATGACTCGAGGAAAGGCAGCCAAAACACTGGAAGATGATGAGGAAAAAGATGAGCTAGACATGTTCGCTGAGGAGTTTGATGAGAAGCATGCTGCAGAAAAGGATGAGGATAAAGACGACAGCAGAGTCAGTGATGAGGTCATGTGGGAGTACAAATGGGAGAACAAGGAAAACTCTGAGCTCTATGGGCCCTTCAGCAGCCAGCAGATGCAGGACTGGGTGGATGAAGGCTACTTTAAGGATGGAGTGTACTGTAGAAGGATTGACCAAGAAGGTGCCCCTTTCTACAACTCAAAGAGAATAGACTTTGAACTTTATACATGATCTGTTGttattttactgattttatttgatttcttctGCCTATCTGAGAGGGCTTCCCTAATAATTGTTTACTCTTCAATATTTGTCTTTGACTTaagtacacacatacaccagTATGTGCACTTGTGTTTGATACATGAtgcgttttaaaataaagactttatggCTGGATCCAACCTAGTGTTCTGGCTAATGTTACAACTA
>XM_043235470.1
TCACCTGCAGGTGGCGATAGAGGCTCGGGCAGAATCCCGCTAATGACGTTCTTCCGGTTTCAGTGTGCTTGAATGGCGCAGCGGGGAGAATAACATCCAGCATGTCGAAAAGGAAAGTGACATTTGAGGATGGAGATGGGGAGATTATTTTGGAAGATGTTCCGAAGAAGAAGATTGTTGATGGTGTGAGTGGCCCAGGATCCAGATTTAAAGAGAAACACTCTTTGGACAGTGATGAGGAAGATGAAGGAGGAGAGGATGGAGAAAATAGCAGCAAATATGACATCCTTGCCAGTGATGATGTGGAAGGTCAGGAAATGGCAACCATTGACTATGACGAGGGTGTACGCATCACCCCTTTTAATCTCGTCGAGGAAATGCAGGAGGGACACTTTGATTCAGAGGGAAACTATTTTGTCAACAAAGAGAAAGATATCAGAGACAACTGGCTGGACAATATCGACTGGGTAAAGATCAAAGAGCAGCctgtgaaaaagaagaaaggccTTGCAGCTAAGAGGAAGAGAAGAATTGGTGATGAAGATGAAGCAGAAGAGGAAATAAAACGTGAAGAGCAGCGGAAAGACAGTGAGGAAGATGAGGAGGTAGAGGAGAAAGTACCTGCAGAAGACCCTCTGGCTACGTACAGCCGTCATCAGCTCACAGAAGCCGTCATTGAGCTGATGCTTCCTGGAGAAACAGTGGCTGCTGCTCTGAGAAGACTGGGCGGTCTTGGaggacaaaagaagaaagggaGACTGAGAGAAGGggaggaggagaaaaaagaGACTTCGAACAGAGACGCTGGTAAACTGGACAAACTGACAGCCTTAGCGGATAGACTGGTGGGGATTGGAGAATTTGAAATTTATCAGCAGACGTATGAAAAACTGGCCTACAAGTTGAAGGGTATGACTCGAGGAAAGGCAGCCAAAACACTGGAAGATGATGAGGAAAAAGATGAGCTAGACATGTTCGCTGAGGAGTTTGATGAGAAGCATGCTGCAGAAAAGGATGAGGATAAAGACGACAGCAGAGTCAGTGATGAGGTCATGTGGGAGTACAAATGGGAGAACAAGGAAAACTCTGAGCTCTATGGGCCCTTCAGCAGCCAGCAGATGCAGGACTGGGTGGATGAAGGCTACTTTAAGGATGGAGTGTACTGTAGAAGGATTGACCAAGAAGGTGCCCCTTTCTACAACTCAAAGAGAATAGACTTTGAACTTTATACATGATCTGTTGttattttactgattttatttgatttcttctGCCTATCTGAGAGGGCTTCCCTAATAATTGTTTACTCTTCAATATTTGTCTTTGACTTaagtacacacatacaccagTATGTGCACTTGTGTTTGATACATGAtgcgttttaaaataaagactttatggCTGGATCCAACCTAGTGTTCTGGCTAATGTTACAACTA
>XM_043235471.1
TCCAGTCTGTTAAGCGTCTGTGAAGGTCGAGCTAAAGTTTATGCTATGTGCGGTTTTTGTTTACGTTAGCTAGCAGGCACACTTTGACCATGTCGAAAAGGAAAGTGACATTTGAGGATGGAGATGGGGAGATTATTTTGGAAGATGTTCCGAAGAAGAAGATTGTTGATGGTGTGAGTGGCCCAGGATCCAGATTTAAAGAGAAACACTCTTTGGACAGTGATGAGGAAGATGAAGGAGGAGAGGATGGAGAAAATAGCAGCAAATATGACATCCTTGCCAGTGATGATGTGGAAGGTCAGGAAATGGCAACCATTGACTATGACGAGGGTGTACGCATCACCCCTTTTAATCTCGTCGAGGAAATGCAGGAGGGACACTTTGATTCAGAGGGAAACTATTTTGTCAACAAAGAGAAAGATATCAGAGACAACTGGCTGGACAATATCGACTGGGTAAAGATCAAAGAGCAGCctgtgaaaaagaagaaaggccTTGCAGCTAAGAGGAAGAGAAGAATTGGTGATGAAGATGAAGCAGAAGAGGAAATAAAACGTGAAGAGCAGCGGAAAGACAGTGAGGAAGATGAGGAGGTAGAGGAGAAAGTACCTGCAGAAGACCCTCTGGCTACGTACAGCCGTCATCAGCTCACAGAAGCCGTCATTGAGCTGATGCTTCCTGGAGAAACAGTGGCTGCTGCTCTGAGAAGACTGGGCGGTCTTGGaggacaaaagaagaaagggaGACTGAGAGAAGGggaggaggagaaaaaagaGACTTCGAACAGAGACGCTGGTAAACTGGACAAACTGACAGCCTTAGCGGATAGACTGGTGGGGATTGGAGAATTTGAAATTTATCAGCAGACGTATGAAAAACTGGCCTACAAGTTGAAGGGTATGACTCGAGGAAAGGCAGCCAAAACACTGGAAGATGATGAGGAAAAAGATGAGCTAGACATGTTCGCTGAGGAGTTTGATGAGAAGCATGCTGCAGAAAAGGATGAGGATAAAGACGACAGCAGAGTCAGTGATGAGGTCATGTGGGAGTACAAATGGGAGAACAAGGAAAACTCTGAGCTCTATGGGCCCTTCAGCAGCCAGCAGATGCAGGACTGGGTGGATGAAGGCTACTTTAAGGATGGAGTGTACTGTAGAAGGATTGACCAAGAAGGTGCCCCTTTCTACAACTCAAAGAGAATAGACTTTGAACTTTATACATGATCTGTTGttattttactgattttatttgatttcttctGCCTATCTGAGAGGGCTTCCCTAATAATTGTTTACTCTTCAATATTTGTCTTTGACTTaagtacacacatacaccagTATGTGCACTTGTGTTTGATACATGAtgcgttttaaaataaagactttatggCTGGATCCAACCTAGTGTTCTGGCTAATGTTACAACTA

Function

symbol description
cd2bp2 Predicted to be part of U5 snRNP. Orthologous to human CD2BP2 (CD2 cytoplasmic tail binding protein 2).

NR:

description
CD2 antigen cytoplasmic tail-binding protein 2-like

GO: NA

KEGG:

id description
K13099 CD2BP2, PPP1R59; CD2 antigen cytoplasmic tail-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235469.1 True 1549 mRNA 0.46 8 12253858 12259180
XM_043235470.1 False 1439 mRNA 0.45 7 12255908 12259180
XM_043235471.1 False 1427 mRNA 0.44 7 12256075 12259180

Neighbor

gene id symbol gene type direction distance location
hsd3b7 hsd3b7,LOC107582995,LOC107658501,LOC107729456,LOC107737759,LOC107554123,LOC107689649 coding upstream 23479 12216611 ~ 12230379 (+)
setd1a LOC107729457,LOC107658500,LOC107737760,LOC107582993,LOC107554121 coding upstream 38168 12193978 ~ 12215690 (+)
fus fus,LOC107658502,LOC107554122,LOC103040960 coding upstream 61715 12183251 ~ 12192143 (+)
si:dkey-16l2.17 si:dkey-16l2.17,LOC107582999,LOC107729501,LOC107658439,LOC107737763,LOC107689709,LOC107554090 coding upstream 71360 12179223 ~ 12182498 (+)
kat8 kat8,LOC107582998,LOC107658503,LOC107729500,LOC107689650,LOC107554120 coding upstream 76129 12174276 ~ 12177729 (+)
prr14 LOC107729463,LOC107658509,LOC107582987 coding downstream 296 12259476 ~ 12268093 (+)
rusf1 zgc:162613,LOC107729465,LOC107658510,LOC107737752,LOC107554129,LOC107689643 coding downstream 13460 12272640 ~ 12276359 (+)
hspb9 LOC107758484,LOC107583100,LOC107695165,LOC107689635,LOC107554137,LOC107737748 coding downstream 196829 12456009 ~ 12456909 (+)
pyya pyya,LOC107689636,LOC107554138,LOC107583099,LOC107758485,LOC107695175 coding downstream 214889 12474069 ~ 12477272 (+)
mpp2a mpp2a,LOC107582977,LOC107758486,LOC107737744,LOC108434916,LOC106600860,LOC106607467 coding downstream 218662 12477842 ~ 12490062 (+)
G19287 NA non-coding upstream 25338 12227935 ~ 12228520 (+)
G19274 NA non-coding upstream 118901 12132629 ~ 12134957 (+)
G19263 NA non-coding upstream 135083 12118538 ~ 12118775 (+)
G19257 NA non-coding upstream 179355 12074231 ~ 12074503 (+)
G19255 NA non-coding upstream 180785 12072719 ~ 12073073 (+)
G19579 NA non-coding downstream 422078 12681258 ~ 12681565 (+)
G19575 LOC107690704 non-coding downstream 423638 12682818 ~ 12686371 (+)
G19656 NA non-coding downstream 738037 12997217 ~ 13056733 (+)
G19629 ighv4-5 non-coding downstream 746630 13005810 ~ 13096854 (+)
G19627 NA non-coding downstream 800980 13060160 ~ 13061606 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other upstream 3861 12232427 ~ 12249997 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other upstream 135919 12114048 ~ 12117939 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other upstream 153006 12092603 ~ 12100852 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other upstream 204436 12027149 ~ 12049422 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other upstream 360202 11885655 ~ 11893656 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other downstream 44184 12303364 ~ 12315046 (+)
G19326 NA other downstream 252746 12511926 ~ 12513721 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other downstream 260657 12519837 ~ 12528803 (+)
LOC122332158 LOC107583070,LOC107737766 other downstream 576201 12835381 ~ 12987913 (+)
si:dkey-204f11.64 LOC105898698 other downstream 853297 13112477 ~ 13114856 (+)

Expression


Co-expression Network