mylpfa (mylpf,mylpfa,LOC107582990,LOC108249004,LOC108274226)


Basic Information

Item Value
gene id mylpfa
gene name mylpf,mylpfa,LOC107582990,LOC108249004,LOC108274226
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12246754 ~ 12249930 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235473.1
CTCTGTCTTTTTCCCAAGCCACACTTAAGGCTGGATCTATAATTAGCAAAGGGCCTTCGGCAGTATATAAGCCCCCCAGAAACAAGTCACCACGCGGCTTCAGTCTTCACTTCTTGAGCTTCTTAGACTTCACACATACCGTCTCAGCATGGCACCCAAGAAGGCCAAGAGGAGggcaggaggaggagagggTTCCTCCAACGTGTTCTCCATGTTTGAGCAGAGCCAGATTCAGGAGTACAAAGagGCTTTCACAATCATTGACCAGAACAGAGACGGTATCATCAGCAAAGACGACCTTAGGGACGTGTTGGCCTcaatggGCCAGCTGAACGTGAAGAATGAGGAGCTGGAGGCCATGATCAAGGAAGCCAGCGGCCCAATCAACTTCACCGTTTTCCTCACCATGTTCGGAGAGAAGCTGAAGGGTGCTGACCCCGAAGACGTCATTGTGTCTGCCTTCAAGGTGCTGGACCCAGAGGGCACTGGCTTCATCAAGAAGCAATTCCTTGATGAGCTTCTGACCACTCAGTGCGACAGGTTCTCCGCAGAGGAGATGAAGAATCTGTGGGCCGCCTTCCCCCCAGATGTTGCTGGCAATGTTGACTACAAGAACATCTGCTACGTCATCACACACggagaggagaaggaggagtAAACGGTCGTGGAGACAAGACAGAAAATGAAGAGATGAACGTGCATCCCTCACTGCTTAACTCTCCCAGTCTGTTCTCTGTCCTCCTTCTCTTACTTTGTGTTTCTTCCTCCCTTTCCTCCTTTCTATCATCTTTGTTACTCTCAAGCACTTACTCTCTTTGTCTCTCCAAAGACTGGTCTCGCCGAGGCTGAATTGGGAGGGAGGAGAGGTTCATGACCACGGTGTCTGTCAAGTGGGGATATGGGATTGTTTTCAATAAAGTGAACATCCTTTCTGTATCTTTca

Function

symbol description
mylpfa Predicted to enable calcium ion binding activity. Is expressed in caudal fin; esophagus; musculature system; segmental plate; and somite. Human ortholog(s) of this gene implicated in distal arthrogryposis type 1c. Orthologous to human MYLPF (myosin light chain, phosphorylatable, fast skeletal muscle).
mylpf Predicted to be a structural constituent of muscle. Predicted to be involved in skeletal muscle tissue development. Located in lysosomal membrane. Implicated in distal arthrogryposis type 1c.

NR:

description
PREDICTED: myosin regulatory light chain 2, skeletal muscle isoform, partial

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12758 MYLPF; fast skeletal myosin light chain 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235473.1 True 943 mRNA 0.50 7 12246754 12249930

Neighbor

gene id symbol gene type direction distance location
si:ch73-248e21.5 NA coding downstream 105988 12136718 ~ 12140766 (-)
si:ch73-248e21.7 NA coding downstream 110541 12132596 ~ 12136213 (-)
tspan4b tspan4b,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108427360,LOC107583081 coding downstream 114955 12127010 ~ 12131799 (-)
rcn3 rcn3,LOC107729515,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding downstream 140070 12102942 ~ 12106684 (-)
si:ch211-195b15.7 si:ch211-195b15.7,LOC107658491,LOC107689666,LOC107554103,LOC107730731 coding downstream 187205 12049457 ~ 12059549 (-)
pheta2 zgc:153733,LOC107658512,LOC107729468,LOC107582989,LOC107554091,LOC107689645 coding upstream 1987 12251917 ~ 12255778 (-)
zgc:113090 LOC107729437,LOC107658438,LOC107577287,LOC107737781 coding upstream 26905 12276835 ~ 12279429 (-)
kat7a LOC107689642,LOC107554133,LOC107737751,LOC107729527,LOC107582986,LOC107658517,LOC108437993 coding upstream 29778 12279708 ~ 12287876 (-)
g6pc1b g6pcb,LOC107582985,LOC107729528,LOC107658515,LOC107554093 coding upstream 38492 12288422 ~ 12290984 (-)
aoc2 aoc2,LOC107658518,LOC107729559,LOC107582984,LOC107689706 coding upstream 47124 12297054 ~ 12300573 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding downstream 16375 12226575 ~ 12230379 (-)
G19503 NA non-coding downstream 64270 12182258 ~ 12182484 (-)
G19463 NA non-coding downstream 149392 12092899 ~ 12097362 (-)
G19453 LOC107583009,LOC107729419,LOC107658421,LOC107730751,LOC107554101,LOC107689664 non-coding downstream 160533 12085329 ~ 12086221 (-)
G19436 NA non-coding downstream 201354 12044649 ~ 12045400 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding upstream 15915 12265845 ~ 12270936 (-)
LOC122332655 NA non-coding upstream 44210 12294140 ~ 12295423 (-)
G19677 LOC107737766 non-coding upstream 614380 12864310 ~ 12886954 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding upstream 650851 12900781 ~ 12902910 (-)
LOC122332187 NA non-coding upstream 822630 13072560 ~ 13072828 (-)
LOC122341756 NA other downstream 325987 11909775 ~ 11920767 (-)
G19383 NA other downstream 365795 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 518753 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 532035 11694272 ~ 11714719 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 817575 11411985 ~ 11429179 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 89257 12339187 ~ 12343872 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 372853 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 432060 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 756066 13005996 ~ 13068190 (-)
G19700 NA other upstream 797111 13047041 ~ 13047494 (-)

Expression


Co-expression Network