ccdc47 (ccdc47,LOC107721963,LOC107674171,LOC107729550,LOC107658463)


Basic Information

Item Value
gene id ccdc47
gene name ccdc47,LOC107721963,LOC107674171,LOC107729550,LOC107658463
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11633421 ~ 11640057 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235527.1
TATCGGCGCACCATAAACGCCCAGATCTTTTCTTATCCTTGTTGTCAGGGTTCGCACAGCATTGTGGGTAGAGTAGGTCAGATGACCCTCGAGTCTCCTGTGAGGGGTACAGCTGCTGTCACACACTGAAAGGAAACGCCGATATTCACAGGTGAAGCCATGAGGCACCTGGTCTTCCTTCTCCCagccctgctgctgctgctggcccTCCCGGACACTAGGGGGCGCTACAACGACGACTTTGATGACGGTGAGGACATCGCTGAGTTTGATGACAACGACTTCGCTGAGTTCGAGGATGTCAGCGAGGACCCAGCAGTCGATGCGGAGAAAGAGCCGCCCCCACGAGCAGCCCCCTCTTCCACACCCATAGAGGACGACGAAGACGAGGCCACAGTGGAGAACGAGGACAACCAGGACGAGTTTGAAGATGCTGATGCACAGGATCAAGACATGTACAGCAAGTATGACCACGAAGAGTTTGAGGGCTATGAAAAGACCAACCCTTCATTCAAAGACACTCTTATATACAGAGAGGTCCCAGCACACCTTCAGAACAGCTGGGAGAGTTATTACATGGAGATCCTGATGGTCACGGGTCTTCTCGCCTATATTATGAACTACATAATCGGCAAAAACAAGAACAGCAGACTTGCCCAGGCCTGGTTTAATTCCCACAGAGAACTTCTCGAGAGTAACTTTGCCCTCGTGGGGGATGATGGTACCAGTAAGGAAGCCAACAGTACTGGGAAACTGAACCAGGAGAATGAGCATATCTACAACCTTTGGTGCTCAGGACGTGTCTGCTGTGAGGGCATGTTGATTCAGCTCAAGTTTTTGAAAAGACAGGACCTGCTGAATGTGTTGGCCAGGATGATGAGACCAGCCTGTGATCAAGTGCAAGTTAAAGTAACTCTGAATGATGAGGACATGGACACGTTTGTGTTTGCCCTGGGGAGTCGGAAGGCCATGGCGCGCCTGCAGAAAGAGATGCAGGACCTGAGTGAGTTCTGTGGTGATAAGCCCAAATCAGGGACAAAATATGGCATCCCTGAATCTCTGTCCATTTTATCAGAGATGGGAGAGGTCACGGATGGAGTGATGGACAGCAAGATGGTACATTACCTCACCACTCATGCTGAAAAGATTGAGTCCATCCATTTTTCGGACCAATTCTCTGGTCCAAAAGTTATGCAAGAGGAAGGTCAGCCCTTAAAGCTGCCCGAGACCAAGAAAACACTGCTGTTTACATTTAACGTGCCTGGGATGGGTAACACATCTCCCAAAGATATGGACAGTCTGCTGCCTCTGATGAACATGGTGATCTACAGCGTTGACAAGGTCAAGAAGCTTCGTCTGAACAGAGAGGGGAAGCAGAAAGCAGACAGAAACCGTGCTCGTGTGGAGGAGAACTTCCTGAAGCAGACTCACGCTCAGCGACAGGAGGCCGCCCAGACGCGCCgcgaagagaaaaagagagcggAGAAGGAGAGGATCATGAACGAGGAGGATCCTGATAGACAGCGCCGCTTGGAGGAAGCCGCTCAGCGCCGCGAGCAGAAGAAGATGGAGAAGAAGCAGATGAAAATGAAGCAGATCAAAGTGAAAGCCatgtgagacacacacacgcgttcGTAGTCATCAGAGAAACAGTCTATCTACTACTTCCACACATGCTAATGTACACTCTTCTACATGAATGTGCATGCCATTCGATTGGCTGCTATTGCACCCATAGAAACGCTCTGTCCAATCAAGAGAAAGCGGCTGGTTAAGGAGTAAATCTGATCTTTAAAAGACAACTGGATTGGAGATGTCTGAACAGTTTGAACATGTTTTACCGTAGCAATCATTTCAAGCGTGAGCTGTCTGCCTAATTGCATGGCGGTTTTTAAATTGCAAGACTATTGCTTTTTGTGGGCTTTGCCGTAATGTTGTGGACCTTTTGGGCCTCTTCAAAGCAACTTGCCACTTTAGCCAACCTTTTCCAATTCAGTTGTCTCCTGGAGTTCAGTTTGGAGCCTCCGAAGCTCTGTGTAGAGGACCTATGCTTTCATTTCTACTCCAAGAGATTTAACTTCACCTCCTTAAAGTTTCAGCTGTGCTTCTTTTAAAAGTGAGATCCAGGAGTGTTTTTAAAAGGAACTGGGTGGGTAAGAAAGCTACCTTTTTTGTACTATAGTGCTTCCTTAACCCTATTTCTAAGAGTTGATGATTGCAAGCGTTTTTATAGATGAGTAATAGGCACGTTATCATTGTCtttctatataattttttttttaataagcaaagGCCCACTGTGAATTGTCACTGTCAAGGCAGCACAAAGTCCTTTATACGTATTTAACAGAggtgaaattttaatttatcgTTAAGTTAATAGTCGATGAGAGCATCCATGAGCTTATCATGTTTATGAGTGAACACTGACTGTAAccctttttttctgtaacatttgttaatgagacgcttaaataaataaaacattcactgaaa

Function

symbol description
ccdc47 Predicted to enable calcium ion binding activity. Predicted to be located in rough endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human CCDC47 (coiled-coil domain containing 47).

NR:

description
PREDICTED: coiled-coil domain-containing protein 47-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24962 CCDC47; PAT complex subunit CCDC47

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235527.1 True 2496 mRNA 0.47 13 11633421 11640057

Neighbor

gene id symbol gene type direction distance location
moto LOC107729445,LOC107658460,LOC107583041,LOC107674174,LOC107721968 coding downstream 31040 11597240 ~ 11602381 (-)
LOC122341820 LOC107583052,LOC107729535,LOC107658457,LOC107732863,LOC107674145,LOC100534815 coding downstream 181978 11449629 ~ 11451443 (-)
apnl apnl,LOC107658456,LOC107583051,LOC107729534,LOC107732855,LOC107564020 coding downstream 185718 11445525 ~ 11447703 (-)
LOC122341818 coq7,LOC107658455,LOC107583049,LOC107729533,LOC107581445,LOC107677563,LOC107740598,LOC106564609,LOC102792864 coding downstream 192113 11437587 ~ 11441308 (-)
LOC122342175 itpripl2,LOC107729564,LOC107583043,LOC107674135,LOC107564006,LOC107658454,LOC107732846 coding downstream 198360 11431783 ~ 11435061 (-)
kcnh6a kcnh6a,LOC107583039,LOC107658465,LOC107674162,LOC107570755,LOC107721966 coding upstream 5841 11645898 ~ 11676327 (-)
LOC122330909 gfap,LOC107729544,LOC107721967,LOC107658466 coding upstream 41293 11681350 ~ 11688119 (-)
ddx42 ddx42,LOC107583038,LOC107658468,LOC107729497,LOC107730759,LOC107693495,LOC107548322 coding upstream 91936 11731993 ~ 11739714 (-)
rnf113a rnf113a,LOC107693494,LOC107658472,LOC107729443 coding upstream 110171 11750228 ~ 11753580 (-)
LOC122338209 NA coding upstream 194320 11834377 ~ 11836695 (-)
G19117 NA non-coding downstream 222705 11410335 ~ 11410716 (-)
G19108 NA non-coding downstream 297621 11333756 ~ 11335800 (-)
G19019 LOC107561356,LOC107680886,LOC107732897,LOC107551139,LOC107729558,LOC108434911,LOC107687643 non-coding downstream 864023 10767300 ~ 10769398 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding downstream 935882 10689164 ~ 10697539 (-)
G19375 NA non-coding upstream 129665 11769722 ~ 11771648 (-)
G19381 NA non-coding upstream 203957 11844014 ~ 11844199 (-)
G19385 NA non-coding upstream 226950 11867007 ~ 11871906 (-)
LOC122330904 NA non-coding upstream 328537 11968594 ~ 11975569 (-)
G19422 NA non-coding upstream 379526 12019583 ~ 12023427 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 204242 11411985 ~ 11429179 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other downstream 568823 11011936 ~ 11064598 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other downstream 1237080 10394314 ~ 10396341 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other downstream 1422805 9993833 ~ 10210616 (-)
G18433 LOC107670519,LOC107563315 other downstream 2170516 9426572 ~ 9462905 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 54215 11694272 ~ 11714719 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other upstream 72763 11712820 ~ 11728001 (-)
G19383 NA other upstream 213691 11853748 ~ 11880959 (-)
LOC122341756 NA other upstream 269718 11909775 ~ 11920767 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 699130 12339187 ~ 12343872 (-)

Expression


Co-expression Network