cdk21 (cdk21,LOC107581773,LOC107591488,LOC107674697,LOC107720098,LOC107738149,LOC107654471)


Basic Information

Item Value
gene id cdk21
gene name cdk21,LOC107581773,LOC107591488,LOC107674697,LOC107720098,LOC107738149,LOC107654471
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15122546 ~ 15126368 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235529.1
caaaaaaaacatacccgacctgaactaaattattaaaaatattattttgtatatataagttttttgtaatataagtatttagcatttttttaaaaatgtcatgagATGGGGGATATCCAGAAAAAAATCCTGAGCTGTTCATTGGTTGGTTTTTGTAGTTGCAAATCTCGCCCCCGTGCATGTAGTgaggttttattaaaatcatggCGAACAACGTTTATTGATCCGTCTCATTGATCCAAATTAATAGCCAATAGTTTTCCTCCTCGCGGTTTTGGATGACACTGGCAGAAAAGGTAAGTTAATTTACTTAAAACTGTATATCTTCGAAAGAGCGTAGCAATGAACACGTTTCACAGCGTGCACGCTCACCGCGTTATCAATTAAGGGAAAGTGTCTAGAAACACCATTTTTAATGCCAAATGTGCATCTTTGTGTTTTGCATAAATCTCGTGGCATCTGAAGTTGGTCCTCTTTAAGTGGAAAAATCAAATACACAGGTTCAGTTCAACGAATcactaatcattttaatcttttaaagaCTATTAATGCAAACTTCAATTAATCATAAACCAATCTTGTGTCGACGGGAtgtccactttttttttaatagcacgcatgcattaatgaatatttgttatgtttatgcaataatgcttattttgtttcatgtaaCAGTTATACGGTCTAAGGTAGAGTTGAAGGTTGCCCGATTTTCTAAATCCTTTTATCAGGCACCCAATGCCTTTCGTCTCTTGCAGTGGCACGCTCCGACAGACCGATCTGATCTAAACATGGATGACAGCTGCTGTTGGGAGAGCTCAGATTATGAAATCTTGGCAGAAGTCGGCCAGGGCGCCTACGGAAAAGTGTACAAAGCCCGAGAGAGGCGCGGGAAGCAGCGCTTCATAGCGGTCAAGAGGCTCAACATCCCCGAGGAGCCGGAGTCTGGCATCCCTCAGTTCGTGATACGAGAAGTGGCTCTTCTGCGAAAATTAGAGCACTTCAACCACCCCAACATAGTCAAGTTGCTGAATGTGTCAGCTGGATGGCAGAACGAGAAGTTTGACCTGACGTTGGTGTTTGAGTACATCGATCAGGATCTGACCACATTCCTCAGCAAAGCATCGGAAAAAGGCCTAGCCAGGGACAAGATCAAGGATGTGATGCGTCAGTTGCTCTGCGGACTTGACTTCCTCCACACTAACACCGTCATTCATCGGGACCTGAAGCCAGACAATGTGCTTGTGAGCACTCGAGGGGAGGTCAAGATTGCAGACTTCGGTTTAGCCAGGATGTATACGTACCACATCGCCCTCACCCCATGTGTCGTGACCCTGTGGTACAGGGCTCCAGAGGTCCTGCTGAAGTCCAGTTACATGTCTTCGGTGGATATGTGGAGTGCTGGGTGCATCTTTGCAGAGCTCTTTCTGTTAAGGCCTTTGTTTTGTGGATTCACAGAGATCCAGCAGCTGCAAAAGATCTTTGAggtcATTGGATTGCCGGCTGAGGAGGACTGGCCCATTGAAAGCCCTGTCTGCTACAGCACTACATGGGCTGAGAAAAAGCCTACAAAACAACTGCTGCCCAGTCTCACCCATGAGGAGAATGACCTGCTGTCTCAATTTTTGACCTTCAATCCAGCTCATCGCATTTCTGCCTGTAGAGCTTTAGCGCATCCTGTCCTGGCAGATTGCCACCGTGAAGATGAATGACAGATGAGCGAAGAGGGCGGAGTCAAATGATTAGACAGGCTCCTCCCAGCCAATCAGCGGCgcacaaaaaattattctgttaaattgattttgttgttgtttttataatggaGTAAAGTGCAGCACCTTCATCTGTAGATCACGGTTTTGTCTAATGAAAACAAGGTACAAACATCTTTGGTGgaaatatgtacaattttactggtattgttaaaaagaaacttaaaaaaacttcAGATGTTTTTGGAGCTCTCTCTCCTTAATTCATGGGTTTAAAATGACGAGCAGGAATGAGAATTTGTCTTTTTCATGTATGACAGCTCTctaataatgacattttgtgtaTGTTGCAGCACAGTTGGTTGTCTAACGGGTAAGTTTGATGTTTCCAGTTAGCTTCAGTGTGCTAACTTAGAGTTGTTCTCAAAAGTTAACTTATAGCAAAAGTTTTTGCgccttgttttgtgtttgttttggcatCACTTGGAAGTGTTTGCTTTTATTAGTAAATTGTTTGAAGTTTGTATGTTTTCTGTTCCTGACACATTTTCGGTAAAAAGCAGAGCTAACAGTGCATGTTTGGAGTTAAATGGGCCGAGATTAAGTAGTTACgacattttgtaatttaatgcgCATTTTGTCTATTTTCTTTATACTGACACTTCAgtaataaaattagaatttcaA

Function

symbol description
cdk21 Predicted to enable RNA polymerase II CTD heptapeptide repeat kinase activity and cyclin-dependent protein serine/threonine kinase activity. Acts upstream of or within spermatogenesis. Predicted to be part of mediator complex. Predicted to be active in nucleus. Is expressed in brain; oocyte stage I; oocyte stage II; ovary; and testis. Human ortholog(s) of this gene implicated in high grade glioma; lung non-small cell carcinoma; pancreatic adenocarcinoma; pancreatic ductal carcinoma; and primary autosomal recessive microcephaly 12. Orthologous to human CDK6 (cyclin dependent kinase 6).

NR:

description
PREDICTED: cyclin-dependent kinase 6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235529.1 True 2402 mRNA 0.41 7 15122546 15126368

Neighbor

gene id symbol gene type direction distance location
svilc LOC107581739,LOC107654532,LOC107591458,LOC107674723 coding downstream 770 15097919 ~ 15121776 (-)
znf281a znf281a,LOC107581742,LOC107654531,LOC107674693,LOC107591442,LOC107720029 coding downstream 95586 15014945 ~ 15026960 (-)
si:ch211-198m17.1 LOC107581740,LOC107654530,LOC107737902,LOC107674687,LOC107720027 coding downstream 113431 14992043 ~ 15009115 (-)
mpp3a mpp3a,mpp3,LOC107654527,LOC107737916,LOC107720025,LOC107674727,LOC107591370 coding downstream 135406 14967925 ~ 14987140 (-)
baxa baxa,LOC107601305,LOC107721480,LOC107674732,LOC107720019 coding downstream 457713 14657730 ~ 14664833 (-)
retsat.2 retsat,zgc:154169,LOC107737865,LOC107720034,LOC107674695 coding upstream 133 15126501 ~ 15130587 (-)
LOC122341944 retsat,zgc:154169,LOC107737865,LOC107720034,LOC107674695 coding upstream 5047 15131415 ~ 15137894 (-)
LOC122341946 LOC107720104,LOC107592690,LOC107674628 coding upstream 11852 15138220 ~ 15141021 (-)
LOC122341310 LOC107674591 coding upstream 19926 15146294 ~ 15148145 (-)
nmt1a nmt1,nmt1a,LOC107737859,LOC102778525 coding upstream 23523 15149891 ~ 15158341 (-)
G20253 NA non-coding downstream 132555 14988277 ~ 14989991 (-)
G20248 NA non-coding downstream 163259 14956739 ~ 14959287 (-)
G20245 asic2,LOC107674665,LOC107737939,LOC107590420,LOC107654528,LOC102794937 non-coding downstream 270684 14849717 ~ 14851862 (-)
G20233 asic2,LOC107720021,LOC107654528,LOC107601227,LOC107674665,LOC107720082,LOC107590422 non-coding downstream 435110 14632214 ~ 14687436 (-)
G20344 LOC107581796,LOC107738142,LOC107654462,LOC107591562,LOC107674600,LOC107720100 non-coding upstream 125727 15252095 ~ 15254617 (-)
G20338 aldoaa,LOC107581735,LOC107720037,LOC107674678,LOC102778271,LOC103381979 non-coding upstream 153979 15280347 ~ 15333486 (-)
G20352 epn2,LOC107674690,LOC107720043,LOC107654543 non-coding upstream 193342 15319710 ~ 15324611 (-)
G20363 NA non-coding upstream 239768 15366136 ~ 15366451 (-)
G20546 NA non-coding upstream 508704 15635072 ~ 15637612 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other downstream 683005 14435147 ~ 14439541 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other downstream 918196 14202930 ~ 14204350 (-)
G19933 NA other downstream 1316568 13805368 ~ 13805978 (-)
gng13b NA other downstream 1329944 13786009 ~ 13792602 (-)
G19700 NA other downstream 2075052 13047041 ~ 13047494 (-)
LOC122341947 NA other upstream 15449 15141817 ~ 15145608 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 472402 15598770 ~ 15600348 (-)
G20680 LOC101886504,LOC101886427 other upstream 1324772 16451140 ~ 16451800 (-)
LOC122341847 NA other upstream 1326706 16453074 ~ 16455479 (-)
mafk mafk,LOC107703391,LOC107674662 other upstream 1589353 16715721 ~ 16729689 (-)

Expression


Co-expression Network