atp13a1 (atp13a1,LOC107711248,LOC107672485,LOC107757369,LOC107670516)


Basic Information

Item Value
gene id atp13a1
gene name atp13a1,LOC107711248,LOC107672485,LOC107757369,LOC107670516
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9067646 ~ 9083475 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235532.1
GGCGTACGCGCTTGCGTATGCGGAAGCTCtcctgtgtgtgtctgaaatTTTTGAGGAATCTGTGGAAGTGGGCAGACAACGGGCCGGTGCGAAGCTGCCTTTTTACCATCAGCGCCTGCAAGGAGGAGGTGGAGAGTAGGAGGGTCGACGGAGGAAGGCACGCTCTAGAATGGACGAAGCCAAAAAAGAGGGAAACATGTCCGCGGACGGGAGGACGCAGACGCGCGCGCCGAGCGATGATCTGGTGAGATCCGTGTCTCTCCACAGCCGCAGGCCACGCGTTCTGCACGGCACGGTGTTCCCGTTCCTCCTCTTGTATCCGGGCTGCTTGTACGCGTGGTTAGGAGTTTACGGAGCTGCGGAGTACGCTGAGGCCGGCCTGCTCGCGTTCGCCGCTCTCGGGATCGCGCACGTCCTGACAGTGCTCTCTGGCTACTGGTCCGTGCACGCTCACTGCTGGCTCACCTGCTCCAAGGAGTCTGACCCAGCCAGAGCCACCTTTGCAAAAGTTATACCAACTCCCAATAATGGTTCAGCTGAATTGGTGCCTCTCCTGAGGGATAAGgaTGAGGATGGGGCAGAAATTCTGTCCTTTGAGTTCCAGAAGATCCGTTATGTGTACGATAACAAGGAGAAGAAAGTCTTTCTGCCGGTGGCGTTTCCGATCAACTTTCCCATGAGTCATTTCCAAAACTGGAGAGGCTATCAGGAGGAGGATCAGTTACGAGCTGCAGAGAAGCGCTATGGCACCAACCGTGCGGAGATGGTGGTGCCTGACTTCCTGGAGCTCTTCAAAGAGAGAGCCACAGCACCCTTCTTTGTCTTCCAGGTGTTTTGTGTGGGTCTGTGGTGTTTGGATGAGTACTGGTACTACAGCGTCTTCACGCTCTTCATGCTTGTGGCTTTTGAAGCCTCTCTGGTGCAGCAGCAGATGAGGAACATGTCAGAAATCCGCAGAATGGGGAACAAACCGTACATGATCCAGGTCTATCGCAACAGAAAATGGAGGCCTGTGTCTAGTGATGAACTAGTTCCTGGAGACATTGTCTCAGTTGGACGTTCTCCTCAGGATAACCTGGTTCCCTGTGATGTGCTGCTGCTGCGAGGCCGCTGCATTGTGGACGAGGCCATGCTCACGGGAGAGTCTGTACCTCAGATGAAGGAGCCTGTAGAGGACCTGGACCCTGACAGGATCCTGGACCTGCAAACAGACTCCCGTCTTCACATCATCTCAGGAGGCACCAAAGTGGTTCAGCACACCCCACCTCTCAGAGCCAGCGCCGGCCTGAAACCTGTAGACAATGGCTGCGTTGCGTATGTTTTGAGGACGGGGTTCTACACTTCTCAGgGCAAGTTATTAAGGACGATTCTGTTTGGCGTGAAGAGGGTAACGGCCAACAATTTGGAGACATTTATCTTCATCCTTTTCCTGTTGGTTTTTGCCATTGCAGCAGCTGTATATGTTTGGGTCGAAGGGACGAAAGACCCGAGCAGAAACAAGTACAAGCTGTTTCTGGAGTGCACTTTGATCCTCACATCAGTAGTGCCTCCTGAATTACCCATAGAGCTCTCACTGGCTGTTAACACATCTCTCATAGCTCTGGCCAAACTTTATGTGTTTTGCACAGAACCTTTCAGAATCCCCTTCGCTGGGAAAGTGGAGATTTGCTGTTTCGACAAGACCGGCACCCTGACCAGCGACAGCCTGGTAGTTCGTGGTGTTGCAGGACTCAGAGATGGGAAACAAGTGACACCGGTGTCAGATATCCCAGTGGACACTCATCGGGTGGTGGCTACGTGTCATTCTCTGGTCACACTAGATGATGGTCAGCTGGTGGGCGATCCGCTGGAGAAGGCCATGTTGACCGCAGCAGACTGGACACTCACTAAAGATGAGAAGGTGTTTGCTCGCAGTATAAAGACTCCGGGGCTGAAGATCCATCAGAGGTTTCATTTCGCTAGCGCTCTGAAGAGGATGTCGGTGCTGGCGTCATACGAGCGGATGGGCTCCACTGAGCTCTGCTATATCTCGACCGTTAAAGGTGCACCAGAGACCCTGAAGGACATGttctctGAGTGTCCGGCCAGCTATGACGAGGTGCACAGAGAAATGTCACGGGAGGGCGCCAGAGTTCTTGCACTGGGATACAAAGAGATGGGCCACCTGAGCCATCAGCAGGTGCGGGAGGTGAGCCGCGACATGCTGGAGTGTGACCTGCGCTTTGCAGGCTTCATGGTCGTGTCCTGCCCTCTCAAGACCGACAGCAAGGCGGTTATCAGAGAGATACAAGAGGCCTCACATCATgtTGTAATGATCACAGGTGACAACCCTCTAACAGCGTGTCATGTGGCCAGAGAGCTGCATTTCATCCAAAAGGAGCACACACTTATACTGCAGCAAAGCCCCAATCAAGCTGAATGGCAGTGGGTGTCCATAGACGGAAGTGTTTGCCTCCCTCTACCTACTTCCTCAGTCTCAGATTTAATCAGGCGGTACGACCTCTGTGTGACAGGAGAGGGACTAAGCCGCTTGACCTTTGAACCCAGTTTACTCAACGCCCTGCTTCCACATGTGCGAGTCTTTGCTCGCGTCAGTCCTAAACAGAAGGAGTTTGTCATAACTAGTCTGAAGGGACTGGGTTTCGTCACGCTGATGTGCGGAGATGGGACAAATGATGTTGGTGCACTCAAACATGCCCACATAGGTGTGGCATTGTTAGCTAACGCCCCAGAGCACATGCctgagaaaaagaagagaagcaaagaaaaagagTACTCCTCTGGGGAGCCAAGGCCCCCAGTCCCGAGTTCAGGGGTCAAACTCGGCTCTCGTGCAGCCAGACAAAGAATGATGGCACAGAGAGAAGAGCAGCTCGCCGCACAGAAAGAGAGGATCAGTCAGGTGCTGCGAGAGCTAGAAGAGGATCAGATTCAGGTGGTTAAACTGGGCGACGCCTCCATTGCTGCTCCATTCACCTCTAAACTGTCCTCGATACAGTGCATCTGTCACGTGATTAAACAGGGGCGCTGCACTCTGGTGACCACGCTACAGATGTTTAAGATCCTGGCGCTGAACGCTCTGGTTCTGGCTTACAGTCAGTCTGTGCTTTACCTGGAGGGGGTCAAATTCAGCGATTTCCAGGCGACTCTTCAGGGCCTGCTGCTGGCCGGCTGCTTTCTCTTCATCTCAAGGTCAAAGCCGTTGAAGTCTCTGTCCAAAGAGCGGCCTTTACCAAACATCTTCAACCTGTACACTGTCCTCACTGTGCTGCTGCAGTTTGCAGTCCACTTCTGCAGTCTAGTGTACCTATACAAAGGGGCTCAGAAAAGAAGCCCACCCAGGACTGAGCAGTTTGTGGACCTGTACAAAGAGTTTGAGCCCAGTCTCATTAACAGTACTGTATACATCATGTCTATGGCCATGCAAATGGCCACATTTGCCATTAATTATAAGGGTCATCCTTTCATGGAGTCTCTCACTGAGAATCGGCCCTTGCTGTGGAGCATCGGTATATCAGGGCTTGCCATAGTAGGACTGCTGACGGGGTCTTCACCGGAATTCAATGAGCAGTTCGCCTTAGTGGATATTCCAACTGAGTTTAAGTTAATAATAGCCCAGGTCCTAGTTGTGGATTTTGTCGCCGCCCTGTTGGTGGACAGAGTCTTGCAGTTCCTGCTGGGCAAAGGAACCCTGAGGTTGCCTAAATGAACTGTTATTGCCAACAGTCACCAAAGCAGCTGCTGCCCCTCGCGACCAGACTGTGAACTGGCTTTACAGAAACACGGTACTTGACTGGTGGCAAACTCTGCGAGATGCGAAAGGATGGGCGTGAAACTCAATACTGTACACACCCCAGTGTTTCCTTTTCCTCCCTGTCTTTGCTCTGTCTTAATACTTTagcttcattttctttctaCTGACATCTTTAACCACCCCCTCCGCTCTGAAGGCCAAGAAAACTACAGTATTGTGTTGAgggtgagagtgtgtttgagtgcaGTTGAGGCACACGACTGTGACAGGGGCGTTCTGAAgaagtgtttctttttctttttttttttttttttgatttgttttcatcattttgtaaaaagacAAATCTCAGAAAGACTtataaatgaccaaaaaaacctgttgttgtgttatt

Function

symbol description
atp13a1 Predicted to enable ATP binding activity; ATPase-coupled transmembrane transporter activity; and metal ion binding activity. Predicted to be involved in cellular calcium ion homeostasis. Predicted to act upstream of or within cation transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP13A1 (ATPase 13A1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function

KEGG:

id description
K14950 ATP13A1, SPF1; manganese-transporting P-type ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235532.1 True 4148 mRNA 0.52 25 9067646 9083475

Neighbor

gene id symbol gene type direction distance location
lmx1al lmx1al,LOC107672514,LOC107670451,LOC108429662,LOC108256788,LOC107567229 coding upstream 3499 9043438 ~ 9064147 (+)
LOC122341294 gmip,LOC107672475,LOC107670530,LOC107587992,LOC107711163,LOC107757342 coding upstream 26113 9024378 ~ 9041533 (+)
colgalt1a colgalt1,LOC107672476,LOC107757371,LOC107711180,LOC107670492,LOC107567242,LOC108429625,LOC108257422 coding upstream 46000 9013095 ~ 9021646 (+)
LOC122333359 hs3st4,LOC107703335,LOC107568293,LOC107741793,LOC106601107,LOC105013403,LOC106607349 coding upstream 87770 8976324 ~ 8979876 (+)
LOC122342001 cpt1cb,LOC107747872,LOC107667163,LOC100333227,LOC107730771,LOC107689673 coding upstream 212881 8835129 ~ 8854765 (+)
LOC122332643 LOC107670450,LOC107672442,LOC107711182,LOC107757351,LOC107567228 coding downstream 889 9084364 ~ 9089675 (+)
pbx4 pbx4,LOC103392870,LOC102788435 coding downstream 10340 9093815 ~ 9127734 (+)
stxbp2 stxbp2,LOC107711254,LOC107587946,LOC107672507,LOC107670524,LOC107757364,LOC107563326 coding downstream 105661 9189136 ~ 9199702 (+)
LOC122341842 LOC107588008 coding downstream 119356 9202831 ~ 9206354 (+)
xab2 xab2,LOC107672506,LOC107670481 coding downstream 123179 9206654 ~ 9212934 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding upstream 185524 8881198 ~ 8882122 (+)
G18092 NA non-coding upstream 391760 8671661 ~ 8675886 (+)
G18055 NA non-coding upstream 577229 8474293 ~ 8490417 (+)
LOC122331402 NA non-coding upstream 753156 8312389 ~ 8314490 (+)
G18025 fam234b,LOC107576065 non-coding upstream 850615 8216524 ~ 8217031 (+)
G18303 NA non-coding downstream 166624 9250099 ~ 9250630 (+)
G18305 NA non-coding downstream 178495 9261970 ~ 9262239 (+)
G18425 LOC105357980 non-coding downstream 330169 9413644 ~ 9414007 (+)
G18429 NA non-coding downstream 400960 9484435 ~ 9484736 (+)
G18443 NA non-coding downstream 458225 9541700 ~ 9543366 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other upstream 55468 9010050 ~ 9012178 (+)
LOC122341292 LOC107729471,LOC107687638 other upstream 78836 8980591 ~ 8988810 (+)
G18048 NA other upstream 325344 8513349 ~ 8742302 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other upstream 504267 8260084 ~ 8563379 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 54992 9138467 ~ 9183290 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other downstream 100924 9184399 ~ 9185660 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 609474 9692949 ~ 9697915 (+)
G18491 NA other downstream 656321 9739796 ~ 9749880 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other downstream 715340 9798815 ~ 9799796 (+)

Expression


Co-expression Network