rnf113a (rnf113a,LOC107693494,LOC107658472,LOC107729443)


Basic Information

Item Value
gene id rnf113a
gene name rnf113a,LOC107693494,LOC107658472,LOC107729443
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11750228 ~ 11753580 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235538.1
CACAAGAGGCGCTATAACCGCAGCTCGTCGTGTTTTCATACGTAGTTAAAGATGGCGGAGTCCGAAAAGCCGAAAACAACCTGCaagtttctttttaagaagTCAAACAAGAAATTTTCTGCACGGAAAAGAAATGCGAGCGACAGCGACAAAGACAGGAGTAGCGGCGAGGAGGGCAGTGCTGTGGTCAGAAAGAAGAAAGCTGCTGCTACGAATCCCATGATTCAGAAAACAAAGAAAGTGGAGAGGGAAGAAGTCTCATCGAGCGAAAGTGAAGAGGAGAAAGAAGACAAGAGTGTGACTGTCTCTTACAAGTCGACTCGGTCAGCGAAACCAGAGGGACCAGATGACATGGGGGCCACTGCTCTTTACCAGCTGGACACAGAGAGGGACAAAGATGCTCAGGCCATTTTTGAGCGCAGCCAGAAGATTCAGGAGGAGCTCTCTGGTAAAGACGACGATAAAATTTATCGCGGCATCAACAACtaccataaatacattaaacccAAAGACTCCACCATGGGCAATGCTTCCTCTGGTATGGTCAGGAAAGGACCAATCAGAGCGCCTGAGCACCTGAGGGCCACAGTGCGGTGGGATTACCAGCCTGACATTTGTAAAGACTATAAAGAGACAGGCTTCTGTGGGTTTGGAGACAGCTGTAAGTTTCTTCACGATCGCTCAGACTATAAGCACGGCTGGCAGATTGAGCGAGAGCTAGAAGAAGGGCGGTATGGAGCAAATGATGAGGAGAACTACGAAGTGAGCAGCGATGAGGAAGATCTTCCTTTCAAGTGCTTCATTTGTAGAGAGTCTTTTAAAAACCCCATTATCACGAAgTGCCGGCACTACTTCTGCGAGGCCTGTGCTCTCCAGCACTACCGCAAATCTAAGCGCTGCTACGTTTGCAACCAGCAGACCAATGGGGTCTTCAACCCTGCCAAAGagcTCATGGCTAAGATGCAGAAACAGCAGGCAGCTGATGACCAGCCTCCCTCAGAGGAGGATGACTAGCACCACACAGCTTCATCTTctgtgttttacttttattattccGATCCTCTCAGTgttgtacattttcaaaacctttgaaataaacatacttttttttgtagaa

Function

symbol description
rnf113a Predicted to enable metal ion binding activity. Predicted to be involved in snoRNA splicing. Predicted to be part of U2-type spliceosomal complex. Human ortholog(s) of this gene implicated in nonphotosensitive trichothiodystrophy 5. Orthologous to several human genes including RNF113A (ring finger protein 113A).

NR:

description
PREDICTED: RING finger protein 113A

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13127 RNF113A, CWC24; RING finger protein 113A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235538.1 True 1117 mRNA 0.47 10 11750228 11753580

Neighbor

gene id symbol gene type direction distance location
ddx42 ddx42,LOC107583038,LOC107658468,LOC107729497,LOC107730759,LOC107693495,LOC107548322 coding downstream 10514 11731993 ~ 11739714 (-)
LOC122330909 gfap,LOC107729544,LOC107721967,LOC107658466 coding downstream 62109 11681350 ~ 11688119 (-)
kcnh6a kcnh6a,LOC107583039,LOC107658465,LOC107674162,LOC107570755,LOC107721966 coding downstream 73901 11645898 ~ 11676327 (-)
ccdc47 ccdc47,LOC107721963,LOC107674171,LOC107729550,LOC107658463 coding downstream 110171 11633421 ~ 11640057 (-)
moto LOC107729445,LOC107658460,LOC107583041,LOC107674174,LOC107721968 coding downstream 147847 11597240 ~ 11602381 (-)
LOC122338209 NA coding upstream 80797 11834377 ~ 11836695 (-)
baxb LOC107729453,LOC107658432,LOC107729452,LOC107548291,LOC107693506,LOC107730775,LOC107548334 coding upstream 84063 11837643 ~ 11843610 (-)
tnnt1 tnnt1,LOC107583024,LOC107729530 coding upstream 139815 11893395 ~ 11900727 (-)
pih1d1 LOC107583023,LOC107658482,LOC107729529,LOC107730744,LOC107548339 coding upstream 147549 11901129 ~ 11907793 (-)
cpt1a2b cpt1cb,LOC107730771,LOC107689673,LOC107548342,LOC106600940 coding upstream 170789 11924369 ~ 11948555 (-)
G19117 NA non-coding downstream 339512 11410335 ~ 11410716 (-)
G19108 NA non-coding downstream 414428 11333756 ~ 11335800 (-)
G19019 LOC107561356,LOC107680886,LOC107732897,LOC107551139,LOC107729558,LOC108434911,LOC107687643 non-coding downstream 980830 10767300 ~ 10769398 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding downstream 1052689 10689164 ~ 10697539 (-)
G19375 NA non-coding upstream 16142 11769722 ~ 11771648 (-)
G19381 NA non-coding upstream 90434 11844014 ~ 11844199 (-)
G19385 NA non-coding upstream 113427 11867007 ~ 11871906 (-)
LOC122330904 NA non-coding upstream 215014 11968594 ~ 11975569 (-)
G19422 NA non-coding upstream 266003 12019583 ~ 12023427 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 22227 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 35509 11694272 ~ 11714719 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 321049 11411985 ~ 11429179 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other downstream 685630 11011936 ~ 11064598 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other downstream 1353887 10394314 ~ 10396341 (-)
G19383 NA other upstream 100168 11853748 ~ 11880959 (-)
LOC122341756 NA other upstream 156195 11909775 ~ 11920767 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 585607 12339187 ~ 12343872 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 869203 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 928410 12681990 ~ 12763090 (-)

Expression


Co-expression Network