LOC122341872 (bglap,LOC107746533,LOC107676398)


Basic Information

Item Value
gene id LOC122341872
gene name bglap,LOC107746533,LOC107676398
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8552086 ~ 8556310 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235544.1
gttataaataaaaatgagtgacACAGAGATACAGTTACAGATCAGCTAAAGGACAGAGACAAACATGAAGAGCCTCACACTCCTGATCTTCTGCTGCGTGATAGCTGCATGTCTGAGCgcagGTCTTCCTGACACTAAGTCAGTGAGTCCTGCAGAATCTCGCAGTGATGATGGTGTGTTTATGAAACAAGATGTGGCCTCAACAGTCGTGAGACAGAAGAGAGCAGGAACAGCACCTGCAGACCTGACTGTGGCTCAGCTGgagagTCTGAAGGAAGTGTGTGAAGCGAACCTGGCCTGTGAGCACATGATGGATGTGTCCGGCATCATTGCAGCCTACACTGCGTACTATGGGCCCATTCCCTACTAGATCACCGCTGCTGGACATTACAGCGCATTATGAGCATCtgtcaaaaatgataaaaaaaaaaacataagcagAGTTGTTGAAGCCATACCAGATtgtaataaagaaagaaattaaataa

Function

symbol description
bglap Predicted to enable calcium ion binding activity and hydroxyapatite binding activity. Predicted to be a structural constituent of bone. Acts upstream of or within response to mechanical stimulus. Predicted to be active in extracellular region. Is expressed in several structures, including osteoblast; renal tubule; scale; skeletal system; and trabecular layer. Human ortholog(s) of this gene implicated in osteoarthritis; osteoporosis; prostate cancer; rheumatoid arthritis; and vitamin K deficiency bleeding. Orthologous to human BGLAP (bone gamma-carboxyglutamate protein).

NR:

description
PREDICTED: osteocalcin

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235544.1 True 488 mRNA 0.45 4 8552086 8556310

Neighbor

gene id symbol gene type direction distance location
LOC122341287 LOC107758354,LOC107569871 coding upstream 53807 8493695 ~ 8498279 (+)
LOC122341286 NA coding upstream 57860 8493421 ~ 8494226 (+)
wbp2nl wbp2nl,LOC107569878,LOC107661077,LOC107670540,LOC107749952,LOC107568364 coding upstream 251326 8296132 ~ 8300760 (+)
rrp7a LOC107673310,LOC107591059 coding upstream 322472 8227784 ~ 8229614 (+)
poldip3 poldip3,LOC107661083,LOC107580331,LOC107714893,LOC107666602,LOC107579899 coding upstream 324732 8219924 ~ 8227354 (+)
ddx47 ddx47,LOC106601200 coding downstream 9090 8565400 ~ 8575713 (+)
LOC122341890 grin2bb,LOC107725336,LOC107573036,LOC107698059,LOC108425688,LOC107758357,LOC107661082,LOC107676879 coding downstream 59970 8616280 ~ 8660516 (+)
LOC122330982 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding downstream 148134 8704444 ~ 8708282 (+)
LOC122342001 cpt1cb,LOC107747872,LOC107667163,LOC100333227,LOC107730771,LOC107689673 coding downstream 278819 8835129 ~ 8854765 (+)
LOC122333359 hs3st4,LOC107703335,LOC107568293,LOC107741793,LOC106601107,LOC105013403,LOC106607349 coding downstream 420014 8976324 ~ 8979876 (+)
G18055 NA non-coding upstream 61669 8474293 ~ 8490417 (+)
LOC122331402 NA non-coding upstream 237596 8312389 ~ 8314490 (+)
G18010 NA non-coding upstream 334869 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding upstream 335055 8216524 ~ 8217031 (+)
G18016 NA non-coding upstream 448669 8103050 ~ 8103417 (+)
G18092 NA non-coding downstream 115351 8671661 ~ 8675886 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding downstream 324888 8881198 ~ 8882122 (+)
G18303 NA non-coding downstream 693789 9250099 ~ 9250630 (+)
G18305 NA non-coding downstream 705660 9261970 ~ 9262239 (+)
G18425 LOC105357980 non-coding downstream 857334 9413644 ~ 9414007 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other upstream 935 8544291 ~ 8551151 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 399192 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 492229 8056659 ~ 8059857 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other upstream 585892 7964749 ~ 7966194 (+)
LOC122341279 LOC107730542,LOC107679029,LOC107563335 other upstream 589110 7960071 ~ 7962976 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 424281 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 453740 9010050 ~ 9012178 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 582157 9138467 ~ 9183290 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other downstream 628089 9184399 ~ 9185660 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 1136639 9692949 ~ 9697915 (+)

Expression


Co-expression Network