trip10a (trip10,trip10a,LOC107596831,LOC107670505,LOC107672474)


Basic Information

Item Value
gene id trip10a
gene name trip10,trip10a,LOC107596831,LOC107670505,LOC107672474
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9538376 ~ 9563382 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235554.1
CAGACAGGCAGATCTGAAAGCTGGAAACTGGATCCGGCGGCTCCTTTAAGAATTAGGGATCTGGGAGTGACGCGGCAATGAAATCCAGTTGATCCTTCTCTCGCTTTGCGACGAAAAGTATTTGTGCCACCTCAAAGTAGCTGCCGCCGGAGATCCGTCGCGATTTGTTCAGCGTCGCGCGCGAATGTGTGGGAAAGGAATGACTCTCGTTCTTTGATCCTGTTTTAAACATCTGTTACTCTTGTAAGTCGGGATAACTTCGCAGCCTGATAGAGTGGAGCGCCGGGAGAGCTGAACATGGACTGGGGCACCGAGCTTTGGGACCAAAATGACATCcttgataaacacacacaatctgGCCTGGACCTGGTGGAGAAATACGTGAAGTTTGTGAAGGAGCGAACCGAAATCGAGCAGAATTACGCCAAGCAGCTGAGGAATTTAACCAAGAAATACAGCCCTAAAAGAGGCAGCAAAGAAGAGCAGGAATGCAGGTTCTCCAATCACCAGGCCTTTCTGGACATCCTGAATGAGATGAACGACTACGCAGGCCAGAGGGAGCTGATCGCCGAGAACATGATGATCAATATCTGCATCGAGCTCACAAAGTACCTGCAGGAGCTCAAACAGGAGCGCAAGATGCATCTGTCAGAAGCCAAGAAAGCACAACAGTCTCTGGAGGGCACCTACAAGCAGCTTGACAGTAGTAAAAAACGATTTGAGAGGGAGTGGAGAGAAGCAGAGAAGGCTGCTCAGTATGCAGAGAAAACCGATCAGGACCTCAATGCTACCAAAGCCGACGTGGAAAAGGCCAAACAGCAGGCGCATATGCGAACGCACATAGCAGAGGAGTGTAAAAACGACTACGCTTCACAACTTCAGAAGTACAACAAAGAACAGAATCAGTTCTATTTCACGGACATGCCTCTTATTTTCAATAGGCTGCAGGACATGGATGAACGGCGCATCAAAAAGTTGGCGCAGGGTTACATCCTGTTTGCAGACACGGAGCGTCATGTCATGCCCATCATTGGGAAGTGTCTGGAGGGCATAACCAGAGCTGGCACAAATGTCAACGAGAGGAATGACTCTGTGGTTCTAATAGAGCAGCACAAGTCTGGCTTCGAGAGACCAGGAGATGTGGAGTTTGAGGATTACAGTCAGGGCATCAACCGGGCCTCCTCTGACAGTAGCCTGGGCACTCCTAAAGGTCCTCTAGAGTTGCTGGGCAAGAACAAGAATAAAACATTCCGGTTGTTCAATAAGAAGAGCAAGCTGCCCTCGTCTTCACTCAGTCCTTTCTCCACACCCCCCCCCCCCTCGCCCGCTAACGGACCCCCCCCCAAGTTTGGCCGGGACCCCCTGTCGTACTGTTTGAAGGAAATCAATAAGACAGTCAAACCCCGAATCTCTTCCTTCCGGACCCTCAAGAGAACGTCTGTGGACACAGAGGGCTTCACCCATCTTCCTCCTGAGCAGCGCAGAAAACGCTTGCAGCAGAAGATCGATGACATCAGCAAGGAGCTGCAGAAGGAAATGGATCAGAGCGAGGCTCTGGGTAAAATGAAAGATGTGTATGAAAAGAACCCTCAGATGGGAGATCCTGCCAGTTTGGCACCTCAGATCACTCAGACGGCACAAAACATGGAAAGACTGAGAGGAGAACTCAACAAATATGAGTCCTGGCTCGCAGAGGCAGGGGGCCGTGGAGACTCGATACGATACTCAACACACTCTCTGAACAATAACGGTGCTCATAACCCTAGCAGTCCTGGAGCTATCTCCGATGACACAGACTCCACCCAGGCCATCTACACTGAATTTGATGACGACTTTGAGGAAGAGGAACTCGCCGCACCTATTGGGCAATGCACAGCACTCTACAATTTCCCAGGCTCCAGCGAGGGAACCATCTCCATGCAGGAAGGGGAGGTGCTGTCTGTAGTGGAGGAGGATAAGGGCGACGGATGGACACGAGTGCGCCGGAACAACGGGGACGAGGGCTACATCCCAACTTCTTATGCTACCATCACTCTTAATAAATGACCTCATCCCCTCTCCACCCGCTGCAGCAGAGACGCACTATACCAAACACTATGAGTAGCTTCAGATTACCACTCATTATGTCCTAACATGGCTTGCTGCTCCTCTCTGAGAGATAATTTAAGGGGGAAATCACTGCACAATGAGCTAACACACTCCTCCTCTAAGGATGAATGAGTATCTCAGGGTGTGTATTATGGGAGTAAATGAGGTAGAGAAGGTTGGAATAATTTTTCTCcttattttgcatgaaaaacaACGCCATGTAAACGCAGCTATTGCTCAACAGACGCATCAGCTCCTGTGGTGTCTCTGCGTGATGGTGACTTTCGATAGCAGACTATCAGCAGAGCCGAGATATTCTGTCTGACCGTGATCCACTCAGTGTGTCCTTCACTAAGATCTTCCATCTGCAACTCGATGATGTGATTCTGCATCTGGAGCGAAAAGCGTAACTATCTCCGCTGGAAGAGATCCAGCAGCGTTTTAACTTGAAGTATTTGCTTTGATGATCCGAGTGgccaaaaattatgttttacaaCAGTAAGTGTTGCATATGCTTGCTTAAATGTGCAGTAACATTGATTACCACATCTATGAGTCAATAAGACgtgacatttttgtgtataGAAAACACCGAGCGCCCCAGTACTATTAAATAActccctctttttttaaaaaaaaacttacttagGACTGTTACACAAGTTGACATGCTCTGCAAAATTATGACAATCAAAATCGCCGTCTGCAGAAAAAAGCCACACTTCTCAAATCTAAGGATATGTAGTACAATAAATAGtttgttgaaataaaagaatataatttattgaGTATATAAATAAGTGTTTGTATAATAAACAATCAATCACATTTGTATAAGAGTTGACTGCACACATTTGTTATTTCAGATAGATCAACAATGCACGGTGTACTCGCAGTTaaggaaaaactattttaggCGACAGAAGCAAATTTAGGagtttcatatataaatatgtgaaataatatattttaggcATCACAACACCACTTGTCTTACCGGCTTTTTATTCTTGATGAATAAAGATTGTATAGTTAATAGATTTCTAAATGCAAGGGTTCGAGCCAATGTGTtcagcatttgttttgtttgtctttggaacAAGCCCAAGGCAGAACTGTTAATGTTTGGCTAAGTCAAGGTGCCTTCAACTTTGTGTATGTACCATACTCagaatacaatattttattgtctttataaATGTCAAGCACATTTCTAAGTTCA

Function

symbol description
trip10a Predicted to enable lipid binding activity. Predicted to act upstream of or within actin cytoskeleton organization; endocytosis; and signal transduction. Predicted to be located in several cellular components, including cell cortex; cytoskeleton; and lysosome. Is expressed in blastodisc. Orthologous to human TRIP10 (thyroid hormone receptor interactor 10).
trip10 Enables identical protein binding activity. Predicted to be involved in actin cytoskeleton organization; endocytosis; and signal transduction. Located in nucleoplasm. Biomarker of Huntington's disease.

NR:

description
cdc42-interacting protein 4 homolog isoform X3

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0005764 lysosome cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0008289 lipid binding molecular_function

KEGG:

id description
K07196 TRIP10, CIP4; thyroid hormone receptor interactor 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235554.1 True 3310 mRNA 0.46 16 9538376 9563382

Neighbor

gene id symbol gene type direction distance location
rdh8a rdh8a,rdh8,LOC107587939,LOC107672484,LOC107711264,LOC107757358,LOC107563317,LOC107670529 coding downstream 197373 9333096 ~ 9341003 (-)
notch3 notch3,LOC107711261,LOC107587940,LOC107757359,LOC107670473,LOC107563318 coding downstream 243527 9265773 ~ 9294849 (-)
shfl zgc:171711,LOC107757360,LOC107563321,LOC107670471 coding downstream 277885 9255441 ~ 9260491 (-)
soul5 LOC107672470,LOC107587943,LOC107757348,LOC107563322 coding downstream 283968 9252311 ~ 9254408 (-)
nr5a5 nr5a5,LOC107711258,LOC107672469,LOC107587942,LOC107757363,LOC107670482,LOC107563324 coding downstream 287153 9246376 ~ 9251223 (-)
icam5 NA coding upstream 369 9563751 ~ 9569327 (-)
angptl6 LOC107672431,LOC107587937,LOC107711167 coding upstream 6071 9569453 ~ 9577610 (-)
dnmt1 dnmt1,LOC107587934,LOC107672482,LOC107670489 coding upstream 28933 9592315 ~ 9605013 (-)
s1pr2 s1pr2,LOC107711272,LOC107587933,LOC107672500,LOC107596814,LOC107754042 coding upstream 43902 9607284 ~ 9629912 (-)
ubald1b ubald1b,LOC107754052,LOC107672511,LOC107670507,LOC107596822,LOC107587929 coding upstream 111836 9675218 ~ 9678951 (-)
LOC122342127 NA non-coding downstream 4589 9512446 ~ 9533787 (-)
G18439 olfm2,olfm2a non-coding downstream 53021 9481321 ~ 9485355 (-)
G18426 LOC105357980 non-coding downstream 124369 9413404 ~ 9414007 (-)
G18388 NA non-coding downstream 338674 9198608 ~ 9199702 (-)
G18378 NA non-coding downstream 355105 9182539 ~ 9183271 (-)
G18599 NA non-coding upstream 8218 9571600 ~ 9571805 (-)
G18602 NA non-coding upstream 26539 9589921 ~ 9591291 (-)
G18608 NA non-coding upstream 82931 9646313 ~ 9646566 (-)
G18623 NA non-coding upstream 189853 9753235 ~ 9753522 (-)
G18628 hbaa1,si:ch211-5k11.8,LOC107682494,LOC107587926 non-coding upstream 221867 9785249 ~ 9786124 (-)
G18433 LOC107670519,LOC107563315 other downstream 75471 9426572 ~ 9462905 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other downstream 400287 9134043 ~ 9138089 (-)
zgc:113210 NA other downstream 530933 8992714 ~ 9007443 (-)
fmc1 NA other downstream 1139548 8309532 ~ 8398828 (-)
LOC122342198 NA other downstream 1319321 8218902 ~ 8219055 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 430451 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 830932 10394314 ~ 10396341 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 1448554 11011936 ~ 11064598 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other upstream 1848603 11411985 ~ 11429179 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 2130890 11694272 ~ 11714719 (-)

Expression


Co-expression Network