gadd45gip1 (LOC107553677,LOC107661658,LOC107735399,LOC107715629,LOC107550245)


Basic Information

Item Value
gene id gadd45gip1
gene name LOC107553677,LOC107661658,LOC107735399,LOC107715629,LOC107550245
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 5239573 ~ 5241326 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235578.1
ACTGACGTCTGAGGTCAGAGGATTGTCGTCAAACATGGCGGCCTCCTTGCTGAGCAGGAGGACAGCCTTATTCTTCGGCGGTGGTCAAATAAACGTCTTCGCGCCGGCCGCGGTCCAGCAGATCGCGCACTACAACCCCAGACCCTTCTGGCTGAACATAAAGAGCCCTTACATACCGAGTAAAGAGAGCGAGAAGACCCCCGAGTGGCAGAAGAGCGACAAGTATGAGCGCAGGCTGTTCGGCCGCTACGGACGCGCGTCTGGGGTGGACCCGGCCAAGCTCTGGCCCTCGCACGCCCGTCTGGAGGAGCTGATGGCCGAGGAGAGAGAGTGGCATCCTCCCATAGAAGTGATGCTGGAGAACATCGcggccagagagagagagaggcagcagAGGCGGATGGAGAGAGAGAAGACGATCGCCGAAAACATGGCCAAAATGCCCAAAATGATCGCCGACTGGAAAAAGCAAAAGAGGGACGCGAAGCAGAAGCAGCGAGAGGAGAAAGCCAAGCGGGACAAACTCCTGGCCGAGGCGAGGGAGCGCTTCGGTTACGCTCTGGACCCCCGCAGCGCCAAGTTCAAAGAGATGGTCGCCGAACTggagaaagaggagaagaagaagagaaaacttCTGAGGCGcaagaagagagaggaagagcagGGTGTGGCGGGAACGGCGCCGGCCGAATCCAGCCAGTGACCCTCGGAGAACAAGGACTTACACGCAGTGCTACTGTACCATAATGTAAAATTGGTTTCTTTGTGTGTTGCTAGGATTGTCTCACGGTTTCCGatcaaataaaatcactgaCTGGAACAACA

Function

NR:

description
PREDICTED: growth arrest and DNA damage-inducible proteins-interacting protein 1

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235578.1 True 825 mRNA 0.56 2 5239573 5241326

Neighbor

gene id symbol gene type direction distance location
nme4 nme4,LOC107715653,LOC107695718,LOC107718576,LOC107661657,LOC107553633 coding upstream 248179 4987440 ~ 4991394 (+)
xpo6 xpo6,LOC107715628,LOC107718574 coding upstream 255835 4963561 ~ 4983738 (+)
antkmt fam173a,LOC107553674 coding upstream 277593 4958012 ~ 4961980 (+)
si:dkey-282h22.5 NA coding upstream 281714 4952501 ~ 4957859 (+)
LOC122341982 zgc:112320,pde6g,LOC107718621,LOC107660259,LOC107661785,LOC107553649 coding upstream 302833 4908351 ~ 4936740 (+)
swsap1 LOC107550247 coding downstream 38853 5280179 ~ 5282321 (+)
LOC122341561 LOC107711124,LOC107659564,LOC107550256,LOC107718588,LOC107656793,LOC107579440 coding downstream 168273 5409599 ~ 5413133 (+)
LOC122331179 LOC107550260,LOC107659569 coding downstream 309870 5551196 ~ 5556139 (+)
LOC122331145 NA coding downstream 325239 5566565 ~ 5574214 (+)
gcdhb gcdhb,gcdh,LOC107718595,LOC107653471,LOC107731476,LOC107563244,LOC102794743 coding downstream 333075 5574401 ~ 5580741 (+)
G17061 NA non-coding upstream 19201 5219650 ~ 5220372 (+)
LOC122341773 NA non-coding upstream 27880 5207244 ~ 5211693 (+)
G17059 NA non-coding upstream 30706 5208656 ~ 5208867 (+)
G17026 NA non-coding upstream 204194 4991996 ~ 5035379 (+)
LOC122341984 NA non-coding upstream 325080 4912694 ~ 4914493 (+)
G17056 NA non-coding downstream 13174 5254500 ~ 5257752 (+)
G17112 NA non-coding downstream 164444 5405770 ~ 5406163 (+)
G17115 NA non-coding downstream 209213 5450539 ~ 5517864 (+)
G17300 NA non-coding downstream 352660 5593986 ~ 5594547 (+)
G17315 NA non-coding downstream 405919 5647245 ~ 5648079 (+)
G16981 NA other upstream 332607 4905656 ~ 4906966 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other upstream 693006 4470732 ~ 4546567 (+)
G16979 NA other upstream 777299 4458698 ~ 4462274 (+)
G16955 crebbp,LOC108440697 other upstream 801372 4437288 ~ 4438201 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other upstream 834189 4357032 ~ 4405384 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other downstream 69167 5310493 ~ 5312371 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other downstream 174432 5415758 ~ 5480607 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 315682 5557008 ~ 5565974 (+)
G17302 NA other downstream 355773 5597099 ~ 5598232 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other downstream 716077 5957403 ~ 5962888 (+)

Expression


Co-expression Network