atf4b (atf4b,LOC107585034,LOC107740611,LOC107710053,LOC107662376,LOC107656792,LOC107582897)


Basic Information

Item Value
gene id atf4b
gene name atf4b,LOC107585034,LOC107740611,LOC107710053,LOC107662376,LOC107656792,LOC107582897
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23164362 ~ 23167244 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235607.1
GGCGCTAGAGCTCTTCTCGTctcagctgatttttttttgttgacaacCGAGTGCTTGTGCTCTTCGCCGAAATGGCCGTGTGATCTGCAGCCTGTAGACAGCGCGCAAACTCCTCAGTGCATCAACATAGTGCACTGGCTCAGTACATTTATTCCAAAATGGCGTCCCTTGTGGCAACTCTGACCTTTGCTGTACCTGACAGCACGAAATTATTCAAATTCTCAGTAGAAGACTCTCTGATTCCACTTGAAATAGACAGCCATGTCTTTGATGAGCTCACGGTTTGGCCCGGACGATATGGAGGTCCTTCTCTGGGACCCATCATCACCGATGGCTGACCCTCTGGGGTCCTTCCTAGATAAAGATGAGGAGGTTCTTCCTCTCAGAGGCGCTGAATCGCCCCTCtcatctttctcttcctctccacttccctctctctccccacCCTGCACTCCTCCCTCCCTTCAGAGGGGGGAGAAGGCTGGGCTCAATCAGCTGTCCCTGTCCTGGTTCTCCTCAGATGAGCTTTGCCTAGATAACGGTGGTGCAGGCAGTGGTAATGATCATTCATTCAGTGAAATGGATTGGATGACAGAGCGAATTGATCTGAGTGAGTTTGATCTGGAGTCATTGATTGACTCCTATGATTCTGAGGATCCACCCAGTTCTCCTGAGGAACTCATTGCTTCTCTGGAGTCACAGATAGACCTGGAGTCCCAGCCTGTAGCTTCTGACAATACCCCTTCACCCCCTCCCCCAGTGTCTGTCCCTGAAATCGATCAACTTTCCAACCTTTCATTCACATTGAATACTCCAGTTTCTACTCCATTCATTCCCTCAACACCCTGTGAAGTGTCAGATCCCTCCTCTGTAGTTCCTGAGCCCCAGGCTGAGCTCGAGATAAAGTCTGAACCGGCCTCCCCAGTCCCATCCCCTTCCATCCTTCCACCCGAGTCCCCTACTGACACCCTTGAGCTTGGTTGCGAGGTGGACATAGCTGAAGTTCAAAGTCCAACCCCCGTTGAGATGCGGGTGCCCAAAATTGTTCTGTCCCTCTCCCCAACCCGCATCGTTCTTGTGCTTGCTCCCAAAGAGGAGGCTAATGTGATAGCAACCCATCCAGGTGAGGTGGTTGTGGATAATTCACCAAGTCCAGCCTCCCCTGAGCCACAATCCCCAGCCTCTCCCCAATCTCGGTCTTGTAGGGTGAAGCCATACCCTACACCTGATTCTATGCCCACCCAAAATCAGCAATCGGAGTCACCTTCCCTCACAGGAAGAGTGAAGTCATCCAGTGGCCCAAAGGTTGTGGTTGagaagaagaagctgaagaAAATGGAGCAGAACAAGACTGCGGCGACCCGTTATCGTCAAAAGAAGCGTGCAGAGCAGGAAGCCCTCCTGTCAGAGTGTGCTGTTTTAGAGGAGAAAAATCAAGAGCTGGAAGAAAAAGCAGAATCGCTCACTAAAGAGATTCAGTATCTGAAAGAGCTAATGGATGAAGTCAAGAAGGCAAGAGAGAGCAGGAAGTCGTAGAAACAAATGGACACAGAGGCTTGAAGCTGGGTGAAATGGACAGTTTCAGCATAGCCTGAAGTGCAGAAAATAGGGATGTTGGTCCTAAAAGAAAGTATTTATTGAAGGGTTgaataaataactgttttggTTCTTCCCCTAATGACTTGGTAGAATAAGCTTCCTTTTTAGCATGTTGGCTATCAGTAAAGCCTGATATACTTTtgtaagtgtgtttttattttatcatcttGTGTATTAATGTGCACAGTATTTTATATAGCAGTGCATTGTGTAGTTGgttgtctttcagtttcttAATTGAAATTGTGCTGTATAAACGCTCAATACTTTAGTTCTGTCTTTGTTCATAGAAATGTTATAGTGTGCTTTTATTACCTGTTGACTTTCTATGGGCCTTTCACCATTTTTCAACTaacttaaatgttatttgtgtaataaacatttaaaacgaa

Function

symbol description
atf4b Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be part of ATF1-ATF4 transcription factor complex and ATF4-CREB1 transcription factor complex. Predicted to be active in nucleus. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in prostate carcinoma. Orthologous to human ATF4 (activating transcription factor 4).

NR:

description
PREDICTED: cyclic AMP-dependent transcription factor ATF-4-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04374 ATF4, CREB2; cyclic AMP-dependent transcription factor ATF-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235607.1 True 1991 mRNA 0.47 3 23164362 23167244

Neighbor

gene id symbol gene type direction distance location
LOC122333434 LOC107710041,LOC107740651,LOC107585073,LOC107662378,LOC107687794 coding upstream 29324 23128784 ~ 23135038 (+)
copz2 LOC107740614,LOC107662379,LOC107585036,LOC105013247,LOC106607483,LOC106600844 coding upstream 50264 23103757 ~ 23114098 (+)
cbx1a cbx1a,LOC107585039,LOC107662389,LOC107687782,LOC107710057,LOC107582894 coding upstream 73426 23084146 ~ 23090936 (+)
LOC122342153 c1qtnf6,c1qtnf6a,LOC107695119,LOC107723613,LOC107672153,LOC107583300 coding upstream 245401 22912566 ~ 22918961 (+)
hoxb1a LOC107687776,LOC107585038,LOC107717202,LOC107740618,LOC107662382,LOC107582890 coding upstream 381267 22779834 ~ 22783095 (+)
LOC122341905 adsl coding downstream 4360 23171604 ~ 23181066 (+)
LOC122341904 adsl coding downstream 17604 23184848 ~ 23192889 (+)
tmem150b tmem150b,LOC107662375 coding downstream 25786 23193030 ~ 23197094 (+)
pdgfbb LOC107710051,LOC107582898,LOC107740670,LOC107656789,LOC107585031,LOC107662372 coding downstream 54459 23221703 ~ 23232300 (+)
pvalb6 LOC107585030,LOC107662370,LOC107690741,LOC107602319,LOC107710050,LOC108258409,LOC108412390 coding downstream 95747 23262991 ~ 23300757 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding upstream 15744 23100944 ~ 23148618 (+)
G22584 NA non-coding upstream 47522 23114278 ~ 23116840 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding upstream 68940 23089473 ~ 23095422 (+)
G22554 ddx5,LOC107695114 non-coding upstream 135857 22940247 ~ 23028505 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding upstream 491451 22511428 ~ 22672911 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding downstream 229257 23396501 ~ 23400922 (+)
LOC122341920 LOC107672134,LOC107602299 non-coding downstream 245569 23412813 ~ 23414909 (+)
G22754 NA non-coding downstream 395796 23563040 ~ 23563246 (+)
G22757 NA non-coding downstream 407654 23574898 ~ 23578241 (+)
G22758 NA non-coding downstream 411232 23578476 ~ 23646166 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other upstream 646 23158219 ~ 23163716 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other upstream 256227 22899333 ~ 22908135 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other upstream 393760 22765647 ~ 22770602 (+)
hoxb5a hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619 other upstream 438204 22722022 ~ 22726158 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other upstream 617154 22546158 ~ 22547208 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other downstream 171135 23338379 ~ 23343640 (+)
LOC122341898 LOC107662363 other downstream 176720 23343964 ~ 23361942 (+)
LOC122341907 NA other downstream 236197 23403441 ~ 23408814 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other downstream 257377 23424621 ~ 23431766 (+)
c1qtnf6a c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120 other downstream 542259 23709503 ~ 23721719 (+)

Expression


Co-expression Network