spsb3a (spsb3a,spsb3,LOC107689049,LOC107670907,LOC107745892,LOC107754412)


Basic Information

Item Value
gene id spsb3a
gene name spsb3a,spsb3,LOC107689049,LOC107670907,LOC107745892,LOC107754412
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20321945 ~ 20327552 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235622.1
CATTGTTTACGTCTGTCGTTGAAAGTAGGTCACAGGAAAGTGTGACAGTTAGCTGGTGGACAGAATCCGATCGCTTTTACAGAGACATACATTACAGTGTCATACGAAAACCTTCAGGTATACGAGTCTCCAGCGATCGCAACGGTGCCCCTGAAAGACAGGTGCGGAGGCTCCCGGTTGGCATGTCGAGGCGGAGCAGAAACAGCAGGGCGTGGAGGTACGTATGGAGTGGAATCCGACGGGATGCAGATGCAAGAGCGCTGGTGCTTGCCTCCGAGAATGACGAGTGGGGTTATGATCGCCAGCAGTACAGTGACTCTGATTCTGAAGCCGAGTATCCAGCCATTGTTCCGGCGGTCCCGAGCGCAGTGCCTGTAACGGGAGAGTCATACTGCAGCTGTGATTCACAGATGGAGCTCAGCTGTAACCCTCGGCTCCGGGGTTACACACACTTGCGAGACTGCCACTGCGGAGAAGATGACCAAGACTTTGACTGGGTGTGGGATGAGGGCAGCCGGTCGTCTGCCACGCTGCTGAGCTGTGAGAACAGGAAAGTGAGCTTCCACTCGGAGTACAGCTGTGGAACGGCAGCCATTCGCGGCTCCAAAGAGCTCTCAGAGGGACAGCACTTCTGGGAGATTAAAATGACTTCCCCTGTCTACGGCACAGACATGatggtTGGTATTGGCACATCAGATGTGAATCTGGACAAATACAGACACACATTCTGCAGCCTGCTGGGTAAAGATGAAGACAGCTGGGGTCTGTCATATACAGGTCTGTTACATCATAACGGTGATAAAGTGAGCTTTTCATCACGTTTCGGACAGGGTTCTATTATTGGCATTCATTTGGACACTTGGCACGGCACCCTCACCTTTTATAAAAACCGCAAGTGCATCGGTGTAGCAGCTACAGAGATGAAGAATAAGCGTGTTTTTCCGATGGCGTGCTCCACCGCGGCCAAAAGCAGCATGAAGGTGATTCGCTCGGTCTCGGCTCCCACCTCTCTACAGTACCTGTGTTGCTCACGGCTCCGCAAGCTGCTCCCGTCCGGAGTCGATGCCCTCCGAGTCCTGCCCCTGCCGCCGGGCCTCAGACACCTTCTCCACTCCAAGCTGGGATGGGTGCTAAGCCTGGATCACACGCACATGCACTCGAACACACACAGCCCGCCCGGACCCTCCTCGGGCAGTGACTCTGAGGGCTGCTCCTCAGACCCCGAGGCCTGCCAGCGGAAGCGCTGCCGCTGGACCTGATGCTGCGTGCGCGCATCCATTATGCATCATTATGCACACATCAGAAAAGgtctctacaaaaaaaaaaaaaaaaaaaaaaaaagaaccaacatatataaatatataaacactggaCCCCTGCTGTCAATCACAGTGGTGGATAACAGGACTGGCTGAGTAACTTCAAGGTCAGTCAAGCCTGTTTTACTAGTTGCATCGCTGGTAAATGTTCATCCTTCAAGGCTCTAAAGGTAGTTTGCTCCATCAGGTGACATTCggatatatattacagtatttgtaGTCAGTTTTGTTGTGAACTCCCAGTGGAATGAAGACCATCGGCTCTTCAGACAAAAGCAAGATCTGAACCTCGTGAACCTGTTCTGATGTGGGGAACAATAACATGCCATCATCTGAAGCGCAGACAAACACTCGCACTGTTTGCGTTcgcaaaataaacacaaacgaTACACCCCGAGTGAACTGTACATTTCTCCATTgttgaaaaatgagaaaaaaaatgacctgATCTATTCTGAAGTAATGCATATTCACGTCTCACGGGCCAGTCAGACATCTCAGCACTTTAGAGTGTCACGGTCTGTTCTCTCTTTATGTTTGAACAATCATTGTATGTTTTTACTCTATTCCTGTTTTATCAAACAACTTACCAACACAACAGTGACGTCATGATAAATATCGTCTGCATAAATGTGATTTCACTACCATTACGTTGAAATGGTGAGGAAAAATGCCTGTGTATTTTCACAGCTCTCGTCTCTAGAAATGACTTTGGGCCCTAGTTATTACTCAAAGTGTGTTGATGTGTATCTGAAGAGTTTCTCTGGAAATACCTTGATGCAGTTGTCGAACTGACTGATGCTAACTGAAGTGGAGGTTGATTCAGTGTTCAATCTGTGCAACATCTCTACGTAAGGTTCATATTGAATTCATATGGGGTTTATATTGCAGATTTTGTaattcattgtttaaaaaaaaaaaaaaaaaaaaaaaagtcattttttttggttatgcataaagcacttttttgcgcttattgtatgtatgtatgtagaaATATATACAGGTCCCTATGCTGTGTTCTACACGTATTGTATGTCATAAGCGCTCATGAGAGCTAATTCTCTCATTCACTGTCTTCTCTCTTCCTTCTTTCGCTTTTACTCCATACATTAAGCATGGCCTTTTATATGAGTCAAgaaaaaataaggaaaattatatatgcattaaaaaggGGCTGAatatggttttgtttgttgttctttttgagATCTtaataaaggttccaaaaatTCCAAAAA

Function

symbol description
spsb3a Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in membrane. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human SPSB3 (splA/ryanodine receptor domain and SOCS box containing 3).
spsb3 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol. Predicted to be part of SCF ubiquitin ligase complex.

NR:

description
PREDICTED: SPRY domain-containing SOCS box protein 3

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10345 SPSB3, SSB3; SPRY domain-containing SOCS box protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235622.1 True 2560 mRNA 0.46 7 20321945 20327552

Neighbor

gene id symbol gene type direction distance location
atp6v0ca LOC107754334,LOC107567372,LOC107552490,LOC107745898 coding upstream 1655 20316318 ~ 20320290 (+)
trnac-gca_3 NA coding upstream 7614 20314260 ~ 20314331 (+)
lasp1 LOC107754308,LOC107745925,LOC107552489,LOC107689048,LOC107567378,LOC108413872,LOC108258608,LOC107670908 coding upstream 12485 20296472 ~ 20309460 (+)
arl5c arl5c,LOC107670909,LOC107754318,LOC107567387,LOC107745936,LOC107689047,LOC108260527 coding upstream 31468 20287163 ~ 20290477 (+)
cacnb1 cacnb1,LOC106607253,LOC108413880,LOC107670911,LOC107689043,LOC107552492 coding upstream 37045 20254824 ~ 20284900 (+)
mrps34 mrps34,LOC107567325 coding downstream 604 20328156 ~ 20331230 (+)
nme3 nme3,LOC107661191,LOC107689099,LOC107567334 coding downstream 3782 20331334 ~ 20334050 (+)
cramp1 cramp1,LOC107661046,LOC107745824,LOC107689053 coding downstream 39893 20367445 ~ 20382139 (+)
dhrs7b dhrs7b,LOC107745957,LOC107755107,LOC107689054,LOC107661099 coding downstream 54720 20382272 ~ 20386834 (+)
LOC122341693 LOC107739398,LOC107754510,LOC107661018,LOC107689062 coding downstream 102817 20430369 ~ 20443456 (+)
G21655 NA non-coding upstream 7801 20230015 ~ 20314144 (+)
LOC122342124 NA non-coding upstream 136419 20173694 ~ 20185526 (+)
G21652 NA non-coding upstream 148943 20168636 ~ 20173002 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding upstream 160734 20160436 ~ 20161211 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 351526 19954076 ~ 19970419 (+)
G21660 NA non-coding downstream 12339 20339891 ~ 20345356 (+)
G21661 NA non-coding downstream 13520 20341072 ~ 20342296 (+)
G21669 NA non-coding downstream 66009 20393561 ~ 20393901 (+)
G21671 NA non-coding downstream 80240 20407792 ~ 20408327 (+)
G21687 NA non-coding downstream 152779 20480331 ~ 20518038 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 126224 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 208447 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 252692 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 918769 19399408 ~ 19403176 (+)
G21213 NA other upstream 1029604 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 554646 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 968150 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1310191 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1647700 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1648957 21976509 ~ 22025911 (+)

Expression


Co-expression Network