snrnp70 (LOC107729450,LOC107693498,LOC107658470,LOC107730757,LOC107548330,LOC107583035)


Basic Information

Item Value
gene id snrnp70
gene name LOC107729450,LOC107693498,LOC107658470,LOC107730757,LOC107548330,LOC107583035
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11754248 ~ 11762534 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235629.1
CGCGCCATTTTAAGAAAGGAACGGCTCGTTCAGCTTGGCGAGACTACACGTTGTGTATTGTGTGGACAgaattacatgcaaaatattgAAGAGATTTAAGAAGTTCTAGCACAAAGAGTTCCTACTGACAGACGAAGAGGGGTTTTTGCGCTAAACTCGGAGGTTTCGTCGGAACCGAATGAGAAGCTGAGGTGAACAATGACTCAGTTTCTTCCCCCGAACCTGCTGGCATTGTTTGCCCCGCGGGACCCGATACCTTTCCTGCCTCAACTGGAGAAGCTTCCCCATGAGAAACATCACAACCAACCGTACTGCGGGATTGCCCCTTTCATCCGGCATTTTGAGGACCCCAGAGATGCTCCTCCACCCACAAGAGCAGAGACGCGGGAGGAGAGGTTGGAGAGAAAGAGAAGGGAGAAAATGGAAAGGAGGCAAGTTGTGGTGGAAGCAGAACTAAAACAATGGGACCCACACAATGATCCTAATGCTCAAGGAGACGCGTTTAAGACTTTGTTTGTGGCTCGAATTAATTATGACACCACGGAATCCAAACTACGGCGTGAGTTTGAAGTTTATGGTCCTATCAAACGGATCTATATTGTGTACAACAAGAAAACTGGAAAACCAAGAGGCTATGCATTCATTGAATACGAACACGAAAGAGACATGCACTCTGCCTATAAGCACGCAGATGGCAAAAAGATTGATGGACGTAGAGTGCTTGTTGATGTTGAAAGGGGACGAACGGTCAAGGGATGGCGCCCCAGGAGACTTgGTGGAGGTCTTGGTGGTACAAGGCGAGGAGGGGCGGATGTCAACATCAAGCACTCTGGGAGAGATGACACTTCCCGCTATGATGACCGGCCAATTGGAAGTGACCGCGATCGGGATCGTGAACGCAGGGATCGCAGccgggaaagagagagagaaagggaccGTGGTGAGCGCCGCCGTTCTCGATCCAGAGAGAGACGCAGACGCACCAGGTCTCGTGAGCGAGAAAGGGGCCTCGCGGCTCCAGGGGAGGAGGCAGGAGCTGGTGGCCGGCGCCGGGAAAGGGAAAGAGACCGAGTTGCTGCTGGAGACAGCCGAGAGAGGAGTAGAGAccgagacagagaaagagaccgCAAGAGGAGAAGCAGGAGCAGGgatagaaagagagacagagagagagggaagggtGCTGATGGAGGAGAAGAAGGCATGGGTGGGCTTGCTGATGGCATAATGCCCGAAGGAGGTGATAGAGGTATGGAGGACCCCTTGGGTGGAGAGCCAGGAAGAGGGGAGGAAGGAGGGCCTGAAGGAGAGGATAGAGGACGGGATCGAGACAAAGACAGGGAGAGAGATCGTGACAGGAAGCGTAGCCACAGAGATaaagatagagacagagatcgGGAAAGAAGGCGAGACAGGGATAGAGATCGCGAACACAAGCGTGACCGGGGCGATCGTGACCGTGGGGAGCGCAGGGAAGACAGACATGTGTCCTCCTCAGGAGATCAGGAAGGTTTGGGTAACGGAGGTGAAGAGGGTGAAGAGCAGTTACCACCACAATCAGAAGAAGGCTCACAGGAtgggatgaggatgatgatgatggatcAGGATTCCATACAGTCAGGAGAGGGCTATGCCTCCAATGAGAATGGATACAGGATGGAGGCCCAGGGTGATGAATACTGAACTTGCCGCCATTGTGTGGATGATCCATGGTCATCCGGTTATAATGTTGAATGGATTCACAAATATCCTCAATCATTATTTAATGCCTCCACCCTTTGCTTGCACTATGTCCACAGTGTGTAAGTATTATACTGTACAACCAACAGCTATGATGGAGAGAGCTTAGTGTCTCCCTGGTAAGAAGCAtccttttgttaaaaataaagattatgtagtttaactgtgatttattattgtggggttttttttttttttttgctttttttgagaCCAGTTTTTATTTGTGGGGCTTGCTTCACTTAACAACTAGcctttataatacattttgaattccCTGTCCGACATCAACTCCTTATCAAGTGACTGCATTGCTAGGAAGTGATCTCTCTTGACTGAGGCACTGTGTTTTATTACAGTGtactttttattcagtaagggtaACTGTCAGATCAAATGATATGGATTGTTTAGTACCGTTATGACCATTTTCATAGATGTTCGTTGATTACAAGAGTATTTGCTTGATGGTTTGAAGCGTTATCTGtacaatgttcatttttttatctgCCCCTATTTCTCTGTAACTTTATTCTATCTTTTGTCTTGtacattttgtgttatttgGTTCAATATGTGGATCGTTTGCAAATTGTACATTGGCCCCTAATTTTACTGAAATAACAGGAAGCAAACATTgacaagtttttttaaataggaatGTATGCATTGGGTTAAAAAATCGCtcttattatagttttttttttttttttttaagcgtctCTGGTCTTATTGGTTCTGCTTTTCATTCTtgaataaacactttttattgccAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K11093 SNRP70; U1 small nuclear ribonucleoprotein 70kDa

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235629.1 True 2517 mRNA 0.46 10 11754248 11762534

Neighbor

gene id symbol gene type direction distance location
strada strada,LOC107693497,LOC107658471,LOC107548327,LOC107730762 coding upstream 4320 11740279 ~ 11749928 (+)
dcaf7 dcaf7,LOC105030232,LOC105898766,LOC100702343 coding upstream 108805 11640702 ~ 11645443 (+)
mylk5 LOC107583040,LOC107729567,LOC107658462 coding upstream 124966 11616195 ~ 11629282 (+)
fzd2 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC107721960,LOC107564008,LOC107674136 coding upstream 148071 11603674 ~ 11606177 (+)
ccdc43 LOC107674137,LOC107729438,LOC107583050,LOC107658459,LOC107721961,LOC107564021 coding upstream 160080 11591600 ~ 11594168 (+)
lin7b lin7b,LOC107730776,LOC107548331,LOC107693502,LOC107658474 coding downstream 138 11762672 ~ 11767501 (+)
zgc:193811 LOC107693501,LOC107548311,LOC107583087,LOC107729427 coding downstream 5354 11767888 ~ 11772504 (+)
aldh16a1 aldh16a1,LOC107693504,LOC107730774,LOC107658477,LOC107583027,LOC107729490 coding downstream 81632 11844166 ~ 11852179 (+)
LOC122333949 zgc:92066,LOC107693508,LOC107730763,LOC107548336,LOC107658480,LOC107583030,LOC107693507,LOC107730746,LOC107548335 coding downstream 91228 11853762 ~ 11855061 (+)
LOC122336178 LOC107583028,LOC107729487,LOC107658478,LOC107583029,LOC107729488,LOC107658479 coding downstream 95237 11857771 ~ 11876558 (+)
G19184 NA non-coding upstream 34669 11712609 ~ 11719579 (+)
G19126 NA non-coding upstream 312910 11440506 ~ 11441338 (+)
G19123 NA non-coding upstream 317051 11436944 ~ 11437197 (+)
G18946 smg1,LOC107729485,LOC107583093,LOC107658410,LOC107732845 non-coding upstream 373458 11380273 ~ 11380790 (+)
G18982 NA non-coding upstream 378847 11371502 ~ 11375401 (+)
LOC122338225 NA non-coding downstream 72238 11834772 ~ 11835253 (+)
G19208 NA non-coding downstream 205114 11967648 ~ 11974006 (+)
G19255 NA non-coding downstream 310185 12072719 ~ 12073073 (+)
G19257 NA non-coding downstream 311697 12074231 ~ 12074503 (+)
G19263 NA non-coding downstream 356004 12118538 ~ 12118775 (+)
G18949 NA other upstream 384496 11368893 ~ 11369752 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other upstream 418423 11333741 ~ 11335825 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 911741 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 1055708 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 1650787 10025818 ~ 10103461 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 10666 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 123121 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 264615 12027149 ~ 12049422 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other downstream 330069 12092603 ~ 12100852 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other downstream 351514 12114048 ~ 12117939 (+)

Expression


Co-expression Network