LOC122341935 (LOC107687002)


Basic Information

Item Value
gene id LOC122341935
gene name LOC107687002
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20574273 ~ 20577034 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235648.1
TTAAACAGCAGCGCAGGTCGGGAGGATCAGTGTTTCAACAGGGCCAACAATTACAGCAAGGAGAGAGACAGTGACTACGACTTTTTCTGaggacataaaaataaaatctgttgaAGAAGTTGCGGTACTTCTGTTACTACAGCATTTTAAGCTAGCTGTTACCTACCTGTAAAAAAGATGTCATCTGCAAAAGGAGTTGCTATTGGGATTGACCTGGGCACCACATACTCCTGTGTGGGGGTGTTCCAGCATGGAAAAGTGGAGATCATCGCCAATGACCAGGGAAACAGAACAACACCCAGCTACGTTGCCTTCACAGACACCGAGAGGCTCATCGGAGATGCAGCTAAAAACCAGGTGGCCATGAACCCCAACAACACAGTGTTTGACGCCAAGAGGCTGATCGGCAGAAAGTTTGACGACCCAGTTGTTCAGTCCGACATGAAGCACTGGTCCTTCCAAGTTGTCAGTGATGGAGGAAAGCCTAAGGTGCAAGTTGAGTACAAAGGAGACAACAAGACATTCTACCCTGAAGAGATCTCCTCCATGGTCCTGGTGAAGATGAAGGAGATTGCTGAGGCTTATCTGGGGCAGAAGGTGACAAATGCAGTTATCACAGTTCCTGCCTATTTCAATGACTCCCAGAGGCAAGCGACTAAAGACGCTGGAGTAATCGCTGGACTGAATGTCCTGAGAATCATCAACGAGCCCACGGCTGCAGCCATTGCCTACGGCCTTGACAAAGGCAAATCTTCAGAGCGCAACGTCCTGATCTTCGACCTGGGAGGAGGCACCTTTGACGTGTCCATCCTGACCATTGAAGATGGCATCTTTGAGGTGAAGGCCACGGCTGGAGACACACATCTGGGTGGAGAGGACTTTGACAATCGCATGGTGAATCACTTTGTTGAAGAATTCAAGAGGAAGCACAAGAAGGACATCAGTCAGAACaagagggccctgaggaggctGCGGACAGCATGTGAGCGAGCCAAGAGGACTCTCTCTTCCAGCTCTCAGGCCAGCATCGAGATCGACTCGCTGTACGAGGGCATCGACTTCTACACGTCCATCACCAGAGCACGCTTTGAAGAGATGTGCTCAGACCTCTTCAGAGGAACACTTGAACCTGTGGAAAAAGCCCTGAGAGACGCCAAGATGGACAAGTCTCAGATCAATGACATTGTGTTGGTTGGAGGATCAACAAGAATCCCAAAGATCCAGAAGCTTCTGCAGGATTTCTTCAACGGCAGAGACTTGAACAAGAGCATCAACCCAGACGAGGCAGTGGCTTACGGTGCTGCGGTTCAAGCCGCCATCCTGACGGGAGACACATCTGGAAACGTCCAGgacctgctgctgctggacGTGGCTCCACTGTCCCTGGGCATCGAGACAGCAGGAGGAGTCATGACGGCCCTCATCAAACGCAACACCACCATCCCCACCAAACAGACCCAGACCTTCACCACCTACTCAGACAACCAGCCCGGCGTCCTGATCCAAGTCTTTGAGGGAGAGAGGGCCATGACCAAAGACAACAACCTGCTGGGTAAATTTGAGCTGACAGGAATCCCACCTGCTCCACGTGGAGTCCCGCAGATCGAAGTGACCTTTGACATCGACGCCAACGGAATCCTAAATGTGTCCGCGGTGGATAAAAGCACCGGAAAAGAGAACAAGATCACCATCACCAACGACAAGGGCAGACTGAGTAAAGAGGACATTGAGAGGATGGTGCAGGACGCAGACAAGTACAAAGCTGAAGATGATCAGCAAAGAGAGAAGATCGCTGCCAAAAACTCTCTGGAGTCTTACGCCTTCAACATGAAGAACAGCGTGGAAGATGAGAACCTGAAAGGAAAGATCGGTGAGGACGACAAGAAGAAAGTTATTGAGAAATGTAACGAGGCCATCAGATGGCTAGAAAACAACCAGCTGGCTGATAAAGAGGAGTACGAACATCAGCTGAAGGAGCTGGAGAAGGTCTGCAACCCGATCATCACTAAACTGTATCAGGGAGGGATGCCCGCTGGAGGCTGTGGAGCTCAGGCACGTGGAGCATCAGGGGCCGGTGCTCAGGGGCCCACTATCGAGGAGGTGGATTAGGTATGAAATAGgcagtgtaatttattttgtttatgttttctttATGATTCCAGttacataatttattgtttaagaTTTATTTGAACGTTGTTGTTTATTTGACCACTACTGCTGAATTTCTAGTGCATTGTGTTGCATTTTGTCTTTGTGGATAAgatattatttaacattgttCAAAGACTGCAATTGAtcatttaaattgacattttaaagactgcatataaaatgtattttggtttgatatatttgttttgctaCGATATAAGAAATGCTATATGTGTATAGGACTgttaatgatattttatgtattgAATGTACgttaagaaataaatagaaagtgcTCAGCA

Function

NR:

description
PREDICTED: heat shock 70 kDa protein

GO:

id name namespace
GO:0048593 camera-type eye morphogenesis biological_process
GO:0009408 response to heat biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235648.1 True 2456 mRNA 0.48 2 20574273 20577034

Neighbor

gene id symbol gene type direction distance location
lat LOC107567139,LOC107755157 coding upstream 25300 20541330 ~ 20548973 (+)
LOC122341343 spns1,LOC107552478,LOC107754623,LOC107689070,LOC107739389,LOC107660866,LOC107567150 coding upstream 33085 20528051 ~ 20541188 (+)
sgf29 sgf29 coding upstream 47641 20522868 ~ 20526632 (+)
LOC122342097 LOC107660919,LOC107567207,LOC107754572,LOC107689067,LOC107552480,LOC107735422,LOC107739406 coding upstream 91536 20478686 ~ 20482737 (+)
si:dkey-93n13.2 LOC107754579,LOC107567217,LOC107661267,LOC107689100,LOC107739413,LOC107552446 coding upstream 97040 20474185 ~ 20477233 (+)
pitpnbl pitpnbl,LOC107754658,LOC107739385,LOC107552474,LOC107567088,LOC107689074,LOC107660806,LOC108410611,LOC103031125 coding downstream 746 20577780 ~ 20584896 (+)
sez6l2 LOC107660756,LOC107567075,LOC107754673,LOC107739383,LOC107689077 coding downstream 26580 20603614 ~ 20616947 (+)
kctd13 kctd13,LOC107739382,LOC107660789,LOC107552471,LOC107755045,LOC107567055 coding downstream 40232 20617266 ~ 20622534 (+)
hirip3 LOC107552470,LOC107689078,LOC107739380 coding downstream 45679 20622713 ~ 20627117 (+)
rprml rprml,LOC107568468,LOC107689107,LOC107552459,LOC107754712,LOC107661216,LOC105013322 coding downstream 69192 20646226 ~ 20647895 (+)
G21687 NA non-coding upstream 56235 20480331 ~ 20518038 (+)
G21671 NA non-coding upstream 165946 20407792 ~ 20408327 (+)
G21669 NA non-coding upstream 180372 20393561 ~ 20393901 (+)
G21660 NA non-coding upstream 228917 20339891 ~ 20345356 (+)
LOC122337901 NA non-coding downstream 143539 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding downstream 146424 20723458 ~ 20724700 (+)
G21733 NA non-coding downstream 160943 20737977 ~ 20738225 (+)
G21739 NA non-coding downstream 193623 20770657 ~ 20770881 (+)
G21740 NA non-coding downstream 194090 20771124 ~ 20771524 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 378552 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 460775 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 505020 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1171097 19399408 ~ 19403176 (+)
G21213 NA other upstream 1281932 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 305164 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 718668 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1060709 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1398218 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1399475 21976509 ~ 22025911 (+)

Expression


Co-expression Network