rac2 (rac2,LOC108276437,LOC107561353,LOC108436672,LOC107551172)


Basic Information

Item Value
gene id rac2
gene name rac2,LOC108276437,LOC107561353,LOC108436672,LOC107551172
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10626162 ~ 10638596 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235677.1
gagagagagagagagagagagagagactgaagtAGCAAATCTGTTTCCTGTATTACAACTTAGTTCCTTAACAGTTGTTTTACCGCGGCAGCCGGTAAAAGTTTGTCAAAAGTATCGGAAAATGCAAGCAATAAAGTGTGTGGTGGTCGGAGATGGaGCTGTGGGAAAGACCTGTCTTCTCATCAGCTACACTACCAATGCTTTCCCTGGGGAGTACATTCCCACAGTGTTTGATAACTACTCAGCAAATGTTATGGTGGATAGCAAACCGGTCAACCTGGGCCTTTGGGATACAGCTGGTCAGGAAGACTACGACAGACTGCGGCCACTGTCCTACCCTCAAACGGATGTGTTTCTCATCTGTTTTTCTCTGGTGAGCCCAGCCTCGTTTGAAAACGTCAGAGCCAAGTGGTACCCAGAGGTGAGGCACCACTGCCCTTCCACTCCTATTATTCTGGTCGGCACCAAGCTCGATTTGAGAGATGAGAAGGAGACCATCGAGAAGCTGAAGGAGAAAAAACTGGCACCAATCACTTACCCACAGGGTCTTGCATTGGCCAAAGAAATCGATGCAGTAAAATACCTGGAGTGCTCTGCTCTCACTCAGAGAGGTCTGAAGACAGTGTTTGATGAGGCCATTCGCGCTGTGCTCTGCCCACAGCCCACCAAGGTCAAGAAGAAGGGCTGTGTGCTGCTCTAAGGATGCACGATTTGTCGCTGTAAAGCAGGTACCACAGAAATCCACTGGTTTTCTCCCGAAAATCATCAAGGGAGGCATTTACATTGCGAAAGcctttcttctctttttagCAGAATATAATCTTGAATATGATggcagtgaaatattatttgttctttagaaaatatttaatcatatttttactgATGTATTGTGTTATATTGTGATTGGTTGTGTTGGAGTGTTTTTGTCGGGTACGCAGTCGTTCTCTAGACAGAATAACAGAGATGATCTTTATTTCTGGACCACAAAAAAGTACTTGTTACACAGAGTCGAACTCTGATTATTTTGACCTATGAATCACATCCACATAATACTTGTGTATTCATTTCGGGCAACAATGGccaaaataaactgtttccagaaa

Function

symbol description
rac2 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Acts upstream of or within several processes, including defense response to other organism; leukocyte chemotaxis; and regulation of neutrophil migration. Located in cytoplasm. Is expressed in neutrophil and thymus. Human ortholog(s) of this gene implicated in immunodeficiency 73a with defective neutrophil chemotaxis and leukocytosis; immunodeficiency 73b with defective neutrophil chemotaxis and lymphopenia; and immunodeficiency 73c with defective neutrophil chemotaxis and hypogammaglobulinemia. Orthologous to human RAC2 (Rac family small GTPase 2).

NR:

description
ras-related C3 botulinum toxin substrate 2-like

GO:

id name namespace
GO:0032878 regulation of establishment or maintenance of cell polarity biological_process
GO:0001780 neutrophil homeostasis biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0009611 response to wounding biological_process
GO:0002446 neutrophil mediated immunity biological_process
GO:2000391 positive regulation of neutrophil extravasation biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K04392 RAC1; Ras-related C3 botulinum toxin substrate 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235677.1 True 1106 mRNA 0.44 7 10626162 10638596

Neighbor

gene id symbol gene type direction distance location
fam83fa fam83fa,LOC107690234,LOC107551173,LOC107732892,LOC107561349,LOC107680871,LOC107733829 coding upstream 8581 10607636 ~ 10617581 (+)
grap2a grap2a,LOC107690235,LOC107680873,LOC107561352,LOC107732893,LOC107733828,LOC107551143 coding upstream 18653 10595644 ~ 10607509 (+)
cacna1ia LOC107690236,LOC107733827,LOC107561340,LOC107680839 coding upstream 54935 10422746 ~ 10571227 (+)
LOC122341728 lgals2a,LOC107690239,LOC107733834,LOC107568668,LOC107680883,LOC107568169 coding upstream 225117 10397843 ~ 10401045 (+)
alg1 alg1,LOC107733873,LOC107690237,LOC107738611,LOC107680860 coding upstream 231818 10390510 ~ 10394344 (+)
sstr3 sstr3,LOC107690333,LOC107551151,LOC107680846,LOC107561344,LOC107732886 coding downstream 7308 10645904 ~ 10661084 (+)
eif3d eif3d,LOC107732884,LOC107690232,LOC107680878 coding downstream 33927 10672523 ~ 10678681 (+)
cacng2a cacng2a,cacng2,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643,LOC108434911 coding downstream 72731 10711327 ~ 10769397 (+)
ifi35 LOC107729476,LOC107687635,LOC107551164,LOC107680855,LOC107561363,LOC107732881 coding downstream 179134 10817730 ~ 10820947 (+)
LOC122341641 LOC107729475,LOC107687632,LOC107551163 coding downstream 235641 10874237 ~ 10885623 (+)
G18747 NA non-coding upstream 36343 10589522 ~ 10589819 (+)
G18744 NA non-coding upstream 47018 10571819 ~ 10579144 (+)
G18671 NA non-coding upstream 324112 10273974 ~ 10302050 (+)
G18517 NA non-coding upstream 683009 9865786 ~ 9943153 (+)
G18757 NA non-coding downstream 493 10639089 ~ 10639293 (+)
G18763 NA non-coding downstream 24650 10663246 ~ 10664532 (+)
G18792 NA non-coding downstream 61681 10700277 ~ 10700619 (+)
G18790 si:ch73-233k15.2,LOC107690330,LOC107729516,LOC107561347,LOC107680847,LOC107732904 non-coding downstream 62191 10700787 ~ 10701636 (+)
G18794 NA non-coding downstream 63698 10702294 ~ 10702806 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 522701 10025818 ~ 10103461 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 826366 9798815 ~ 9799796 (+)
G18491 NA other upstream 876282 9739796 ~ 9749880 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other upstream 928247 9692949 ~ 9697915 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other upstream 1440502 9184399 ~ 9185660 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other downstream 53294 10691890 ~ 10698540 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other downstream 114163 10752759 ~ 10842507 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 695145 11333741 ~ 11335825 (+)
G18949 NA other downstream 730297 11368893 ~ 11369752 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 1134604 11773200 ~ 11833924 (+)

Expression


Co-expression Network