shfl (zgc:171711,LOC107757360,LOC107563321,LOC107670471)


Basic Information

Item Value
gene id shfl
gene name zgc:171711,LOC107757360,LOC107563321,LOC107670471
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 9255441 ~ 9260491 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235697.1
atttttgatcaaactgAAAGTGATATGTCACACCAACATACTGAAAGCGCTAAAGGAAACGGTGCCACAGTGTAAGAGGTTTAGCGCTGTCATTACAGGTACTAAAACTACACCgaaagacagagagatgagTCGAATGCGTGAAGAAGTGGAGTTGGAGAAAAGTGTGAGGCGATTGAGAGAGAAGTTTCATGGACTTATTGAAATCGACAAGGCGGTATTGCTCATGCGACGCTATGGAAACAACCATCGTATGGTTGCAATGTGCGTCGCCCTGGCAGATAACGACAGGGAGCTGGACGAGGAAGACGAGTCGGCTTTGAATAACGACCCCGTAGCTAAGAACGTGGTTATGAAGCTCACAGCCGATGAAAAACAACAGgAAGAAAAACCCACCAGGTCATCTGGATCCAGTGGTGCCGGTTTTTCAGCGCAAGCACCgggcaagaaaaaaaacaatgatgatACCGATATAGCGGAGCTCGGGGCACGTCTACGAGTTCTGCCGTTAACAGAGGAAAACAAACGAATGTTTGACCAGGCTCAGGAAAACCAGATCCCTTCTGTCATACATCAGTTTGCCTGCGAGTCATGTGACAGGGATTGGTGGAGACGTGTGCCTCAGAGGAAAAGGGTGTCACGCTGTCACCGATGCAAAAGGAAGTACGATCCTGTGCCAGCCAACAAAATGTGGGGTATAGCAGAGTTTAACTGTCCAAACTGTTTGCGGACCTTCAAgGGTTTTGGGCGGATGGATGGACGTTCGCCTTGTTATGGCTGTCGCTCAGCCATTTTCCCCTCAAAGATTCTGCCACCCAGGAAGAGGAGTATGATGCCTGGGCCTAGAAGCAGAAATCAGCACAGCTGCCTTGCTGAAGACTGTTATAATCGAATGGAGCCCCATGTACCTGGTACGGAATGCGTTCACCCACACAGCAGACAGAAGAACAGGAAGCCACGCGTGGTTTACCCCAGCCCCGCTCACATCAGCAGCGGATCCACCGTCAACACCTGCCTGAGCCAGGGGAGTCTGATAGAAAGCATCAATGAGCTCATTCTAGATGACATTGAAGAAGAGTCTGACGAAGACTCTGACAGCAGCACCTGAAGCAGCAGTTAAACCGCTGAATCACTTCAGCTGCTGCTTTGAATGAAACCTCATGTAACCTTTGATGTAATTGCAAATAATTCACTCAAAGTAACCAATGCATCAAGGCTATAAGCAgactgaataaaatatgtaatgtacCGCAGGCTATATGAACACAGTGCAACATACACCAAACATAAAATCCAGATAAGCAATGACTGACCCCCTGCTGCGGTGTGTATCCAAGAGGGAGCATTTGTGGTTTTCAGTGATGCAGACGATTTACTGACGTGACATGAAACTTGGAAATAGTTGAAATGaccgtcagccaatcagagtctAGAGCATTTGGCAGCACTGTGATGTCATGTTGAATACAAAGCCCAGATATACTTCTTTAAATGTCGATCATACCCTGTTCCTCTCCTTATTCCTTGAATTGTATTATACTGCAGTTtagtatgtttatttgtatatttaagttaGTATATTTCCCcctcatatttttattgttatgttgTCTTTAATAGAATCATAAAAAGCCACATAAGAATAATCTgttacactttacaataaagttcaGTTTGTTGACATTGTTGAAAATACATACTAGGAATTaacaacaaacaatatttaaagcattcaaTATTTACTTAACTAATGTCAGGATTGATCTAAGCATTTACAGTCAGGTTTAAATTCAAAAGTTGCATCTTTggtctaaaatgaaaatatttcattaacattGAGGTTGAtcaatgctgtaaaatatacCTTTTCAGAGTTTTTCAAATGTTAGAAAATGCATTAGCACGTTAACAAACGAGACCTTTTTTGTATAGTGTTTCCTAGTCTTTAAGTTTACACGAAACCTAAGAAAAGTATTTGTtaagaaataatttgattttCTAGCTTTCAAAACATTAGTTGTTCTCTTTCTCAGGTTCAAATTTTTGTAATCCCCCGTTTTTAGACTACTCTTCACACAACTAACAAATACAGGCACTTACGAAGAAAAAGCAGACAGCTCCTGATGAGCAAAACAGATCAGCCTTACATAAGCTGCCATACACACATAAGAGTTGCATGGCGAACTCTAATGAAGATTTCAGGGACATCTGcagggattaaaaaaaaaaggccaaagaCAGACAATGTGTTtaacaataatgttaaataaaaatctggaaTTGTGGATGA

Function

NR:

description
repressor of yield of DENV protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235697.1 True 2290 mRNA 0.41 10 9255441 9260491

Neighbor

gene id symbol gene type direction distance location
soul5 LOC107672470,LOC107587943,LOC107757348,LOC107563322 coding downstream 1033 9252311 ~ 9254408 (-)
nr5a5 nr5a5,LOC107711258,LOC107672469,LOC107587942,LOC107757363,LOC107670482,LOC107563324 coding downstream 4218 9246376 ~ 9251223 (-)
lpar2a lpar2a,LOC107711250,LOC107672473,LOC107587950,LOC107672513,LOC107757366,LOC107670534 coding downstream 122636 9129812 ~ 9132805 (-)
LOC122329549 chchd5,LOC107711181,LOC107757370,LOC107672451,LOC107670463 coding downstream 188638 9065001 ~ 9066803 (-)
LOC122332528 LOC107581739,LOC107738031,LOC107674723,LOC107591458,LOC107720084,LOC107654532 coding downstream 263522 8989124 ~ 8991919 (-)
notch3 notch3,LOC107711261,LOC107587940,LOC107757359,LOC107670473,LOC107563318 coding upstream 5282 9265773 ~ 9294849 (-)
rdh8a rdh8a,rdh8,LOC107587939,LOC107672484,LOC107711264,LOC107757358,LOC107563317,LOC107670529 coding upstream 72605 9333096 ~ 9341003 (-)
trip10a trip10,trip10a,LOC107596831,LOC107670505,LOC107672474 coding upstream 277885 9538376 ~ 9563382 (-)
icam5 NA coding upstream 303260 9563751 ~ 9569327 (-)
angptl6 LOC107672431,LOC107587937,LOC107711167 coding upstream 308962 9569453 ~ 9577610 (-)
G18388 NA non-coding downstream 55739 9198608 ~ 9199702 (-)
G18378 NA non-coding downstream 72170 9182539 ~ 9183271 (-)
G18357 NA non-coding downstream 121628 9133614 ~ 9133813 (-)
G18320 NA non-coding downstream 127712 9124956 ~ 9127729 (-)
G18326 NA non-coding downstream 233135 9021920 ~ 9022306 (-)
G18426 LOC105357980 non-coding upstream 152913 9413404 ~ 9414007 (-)
G18439 olfm2,olfm2a non-coding upstream 220830 9481321 ~ 9485355 (-)
LOC122342127 NA non-coding upstream 251955 9512446 ~ 9533787 (-)
G18599 NA non-coding upstream 311109 9571600 ~ 9571805 (-)
G18602 NA non-coding upstream 329430 9589921 ~ 9591291 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other downstream 117352 9134043 ~ 9138089 (-)
zgc:113210 NA other downstream 247998 8992714 ~ 9007443 (-)
fmc1 NA other downstream 856613 8309532 ~ 8398828 (-)
LOC122342198 NA other downstream 1036386 8218902 ~ 8219055 (-)
LOC122339740 NA other downstream 1046348 8207698 ~ 8209093 (-)
G18433 LOC107670519,LOC107563315 other upstream 166081 9426572 ~ 9462905 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other upstream 733342 9993833 ~ 10210616 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 1133823 10394314 ~ 10396341 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 1751445 11011936 ~ 11064598 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other upstream 2151494 11411985 ~ 11429179 (-)

Expression


Co-expression Network