prmt1 (prmt1,LOC107729532,LOC107658485,LOC107689671)


Basic Information

Item Value
gene id prmt1
gene name prmt1,LOC107729532,LOC107658485,LOC107689671
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11989102 ~ 11993163 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235719.1
CGAAGGGGCGGGAGCAAAACAATTGTGTTTTACATGAGCAGTGCTGCAGTCGTGGTACGATCCAGTTTACCGAAATGGCGGAGACAGCGGACAGAATGGAGgTGTCCCAGGGAGAAAGCTCAGCAAAACCTGCAGCAGAAGACATGACCTCCAAAGACTACTACTTTGATTCCTATGCACACTTTGGCATCCATGAGGAGATGCTGAAGGATGAAGTTCGTACTCTGACGTACAGAAACTCCATGTTCCACAACAAGCATCTCTTCAAGGATAAAGTAGTGCTGGATGTGGGAAGTGGAACCGGCATCCTTTGTATGTTTGCAGCCAAGGCTGGGGCCAAGAAAGTTATCGGGATTGAGTGCAGCAGTATATCAGACTATGCTGTGAAGATTGTGAAGGCCAACAAGTTGGATCACATTGTTACCATCATTAAGGGCAAAGTAGAGGAGGTTGAGCTTCCTGTGGAGAACGTAGACATAATCATCTCCGAGTGGATGGGATACTGTCTCTTCTACGAATCCATGCTTAACACTGTCATTTATGCCAGAGACAAATGGCTGaaaccTGATGGCCtgattttccctgacagagccaCGCTCTATGTCACTGCTATTGAGGATAGACAGTACAAGGACTACAAAATTCACTggTGGGAGAATGTTTATGGCTTTGACATGTCCTGTATTAAGGAAGTGGCCATTAAGGAACCACTTGTGGATGTCGTTGACCCTAAACAGCTTGTTAGTACTGCCTGTCTCATTAAgGAGGTGGACATCTACACGGTGAAGATTGAGGACCTGTCCTTCACGTCACCTTTCTGCCTGCAGGTGAAAAGGAATGACTACATTCATGCGCTGGTAACCTACTTCAACATTGAGTTCACTCGCTGCCACAAGAGGACAGGTTTCTCTACTAGCCCAGAGTCTCCTTACACTCACTGGAAGCAGACTGTCTTCTACCTTGATGACTATCTGACGGTGAAGACTGGAGAGGAGATCTTTGGCACCATCAGCATGAAACCCAATGTCAAGAATAATAGAGACCTGGACTTTACTGTTGACATCGACTTCAAGGGTCAGCTTTGTGAGGTGTCCAAGACGTCAGAATACAGGATGCGCTAGGTTCCTTTGTGTGTGAAGCATCACAGAGCAGTGCACACTTGTGTCTGTGAATCCATGTACATTATTCCAAACTGTGcatgacacatttttaaagattctgTTTTACAGAatgctgactttttttcttttcttcctcctcttAGAAATGTGCCCAATAGGATTAAACATGGCATTCTTTTTGACCCTTTTTCCAAATTTTAGGTGCACCATCTTGGATAAAATACCTTGGGTTTATGCATGTACACGTGTGACTGCTCGGTTACCTGTTTGTCTGATATTTCATCCACATacttatgttttttgtttttgccatgcCAACATGTTGTTGGTCACCTGTAGAAAATGCAAATCAGCCATGTTTTCATATTCCATCTGGCAAAGCCAGCATCTTCCATGTAGGTAAAAACCTGTCATGTTTCACTGTGGACAGGAGTCCTGCCCAGTAGTATCTGAATGAGCCcatatcatttttcttttttttttctttttttttgtgtgttctgtaCTTTGAGGCCATTGTTTTGGACCATCAGTAGAGGGAGCCACTTGTCTCTTTGGAGTAACAGTTTTAATTCATGTAGTGCTCCTAtgtcccctttttttttttttttttttttttttttt

Function

symbol description
prmt1 Enables arginine N-methyltransferase activity. Acts upstream of or within convergent extension involved in gastrulation and histone H4-R3 methylation. Predicted to be active in nucleus. Is expressed in several structures, including adaxial cell; brain; heart; otic vesicle; and pleuroperitoneal region. Orthologous to human PRMT1 (protein arginine methyltransferase 1).

NR:

description
PREDICTED: protein arginine N-methyltransferase 1 isoform X1

GO:

id name namespace
GO:0043985 histone H4-R3 methylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0016273 arginine N-methyltransferase activity molecular_function

KEGG:

id description
K11434 PRMT1; type I protein arginine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235719.1 True 1745 mRNA 0.43 10 11989102 11993163

Neighbor

gene id symbol gene type direction distance location
brsk1b LOC107658484,LOC107548343,LOC108427376,LOC108274928 coding downstream 23154 11949110 ~ 11965948 (-)
cpt1a2b cpt1cb,LOC107730771,LOC107689673,LOC107548342,LOC106600940 coding downstream 40547 11924369 ~ 11948555 (-)
pih1d1 LOC107583023,LOC107658482,LOC107729529,LOC107730744,LOC107548339 coding downstream 81309 11901129 ~ 11907793 (-)
tnnt1 tnnt1,LOC107583024,LOC107729530 coding downstream 88375 11893395 ~ 11900727 (-)
baxb LOC107729453,LOC107658432,LOC107729452,LOC107548291,LOC107693506,LOC107730775,LOC107548334 coding downstream 145492 11837643 ~ 11843610 (-)
si:ch211-195b15.7 si:ch211-195b15.7,LOC107658491,LOC107689666,LOC107554103,LOC107730731 coding upstream 56294 12049457 ~ 12059549 (-)
rcn3 rcn3,LOC107729515,LOC107730752,LOC107689660,LOC107583008,LOC107554106 coding upstream 109779 12102942 ~ 12106684 (-)
tspan4b tspan4b,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108427360,LOC107583081 coding upstream 133847 12127010 ~ 12131799 (-)
si:ch73-248e21.7 NA coding upstream 139433 12132596 ~ 12136213 (-)
si:ch73-248e21.5 NA coding upstream 143555 12136718 ~ 12140766 (-)
LOC122330904 NA non-coding downstream 13533 11968594 ~ 11975569 (-)
G19385 NA non-coding downstream 117196 11867007 ~ 11871906 (-)
G19381 NA non-coding downstream 144903 11844014 ~ 11844199 (-)
G19375 NA non-coding downstream 217454 11769722 ~ 11771648 (-)
G19117 NA non-coding downstream 578386 11410335 ~ 11410716 (-)
G19422 NA non-coding upstream 26420 12019583 ~ 12023427 (-)
G19427 NA non-coding upstream 33201 12026364 ~ 12026940 (-)
G19436 NA non-coding upstream 51486 12044649 ~ 12045400 (-)
G19453 LOC107583009,LOC107729419,LOC107658421,LOC107730751,LOC107554101,LOC107689664 non-coding upstream 92166 12085329 ~ 12086221 (-)
G19463 NA non-coding upstream 99736 12092899 ~ 12097362 (-)
LOC122341756 NA other downstream 68335 11909775 ~ 11920767 (-)
G19383 NA other downstream 108143 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 261101 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 274383 11694272 ~ 11714719 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 559923 11411985 ~ 11429179 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 346024 12339187 ~ 12343872 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 629620 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 688827 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 1012833 13005996 ~ 13068190 (-)
G19700 NA other upstream 1053878 13047041 ~ 13047494 (-)

Expression


Co-expression Network