cdr2l (cdr2l,LOC107743016,LOC107665638,LOC107748864)


Basic Information

Item Value
gene id cdr2l
gene name cdr2l,LOC107743016,LOC107665638,LOC107748864
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27007494 ~ 27019893 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235754.1
CGCTGCGAGAGCGAGACGGACTGGAGACACTTGAAAGTGGAGGACAGATAGCCATCTTCGTCATTATGTCCCTTCGTCCAAACCTCTGGAGCTGTGATCCTTTCATTGCCCGAGATGCTGCTGTATTTCTCAGATCGGCGCATCCCCGAGCTTCCGGCGAAAACCGCGACACACTGATGCTCCGAGCCGGCAGGATGGACGAGTTTGTGACGGAAGAAGATGAGCCGTGGTACGACCAGAGAGACCTGGAGCAAGATCTGCACTTGGCAGCTGAGCTGGGGAAAACCCTGCTGGAGCGCAATAAGGAGCTGGAGGACTCGCTGCAGCAGATGTACATCAACAACGAGGAGCAGGTGCAGGAGATCGAGTATTTGACCAAGCAGATGGAGATGTTGCGTGAGATGAACGAGCAGCACGCTAAAGTGTACGAGCAGTTGGACGTGACGGCTCGAGAGCTGGAGATAACCAATGAGAAGCTGGTGCTGGAGAGCAAAGCTTCTCAGCAGAAGATTGACCGGTTGACCAGTACTATGGAGATGCTGCAGGGGCAGGTGGACACGCTCACCGCTCGCGTGGAGGAATTGCGCACTTTGGAAGAGCTCAGAGTTCgcagagagaagaaagagaggagaaagaCCGTGCACTCGTTCCCATGCCTTAAAGAGCTCTGCACCGCTCCTAGGTACGAGGATGGATTCATGGTGTCTGACCCGGGCAGCGGCGACCTACAAGAATGTCAGCCCGCTGACGAAGAGAACGAACATCTGCGCGTGATGGTGTCATCTCTGCGTGCCGCCGTGGCGGCCGAACGCGGACGGCGAGAGGCCGCCGAGCGGGAATGCGGCGCGGTGCTACAGGAGTTTGAACGGTTGGAGCAGCGCCTCATGGGGGCCGAAAATTGCCAGCGGCGCGTGCACGAGCTGGAGGCGGAGCTCCAAGAGATGCATCAGCTCCGCAAGTCCAGAGCGTGTCTCCTGAGCGGAGACGAGGGCCTGGAGCAGACGCTGCTCAACTGCGCCCCCGAAACGGACACCCCGGACGACGCGGTCATGGCTGGAACGCAGAACGGGGACGCGAACGATGGAGCGGCCCCCGTCCGGAAGAGTTGCAGTGACACGGCTCTGGATGCTATCTCTGCGGTCGACGCCTCGGGGAGACGCAAAGGGAGCTACGCGCTTCACGCCAACGGCGTCCGGAAGAGGGGCATGTCCATCCTCAGGGAGGTAGATGAGCAGTATCACGCCCTTCTGGAGAAGTACGAGGAGCTGCTCGGGAAGTGCCGGCGCCACGAGGAGAGTCTATGCCACGCTGGGGTGCAGACCTCCCGGCCCGTGTCCAGAGACCCGTCCATGAAGGAATGCCGGGCCGCTGAGCCCCAGCAGCCACCCACTCCACCTCAGACGCCCTCGACTCCAGAGGCGCTTGAGGGCATCAGCCGGCAGGTGGAGGCTGTGGACAAGCGGCTGAGCCAAAACACGCCAGAGTATAAAGCCCTCTTCAAGGAGATCTTTTCCCGCTTACAGAGAACCAAGAGCGACATAAACTCCACCAAAGGGAGGAAAAGCGGAAAATAGCCTATTTTGCTCTTAACATTTGTGCCACTGATTTCTTTCCCTGTCTTTCATGTAATgtcttactttttttcttttgggaaaCTAAGAGTCGTTGAGATACATCTGCTATTTAGTACAGCTCATCCATTAATTATTTGGTGCCACATAGCGAGACCAATGGTGGTTTTCTGGAGGTTTCGAGTCTAATGCGCTTTCGCCGCCTTTCAGGGTAGACCATATTACTCAGTTTAACTGTAACCATAATCACCCTAAAGATGATCAAGCACAGGAAGACATGATTCTTGTCATTGCTGATTTCCTTTTATCACGTGTATTACATGTTATGAATAACCACAGCATTGTGTAACCACTTTTGTTCAATATTAAATCACACTTTGCTTTGA

Function

symbol description
cdr2l Is expressed in several structures, including nervous system; neural plate; otic vesicle; presumptive diencephalon; and presumptive telencephalon. Orthologous to human CDR2L (cerebellar degeneration related protein 2 like).

NR:

description
PREDICTED: cerebellar degeneration-related protein 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235754.1 True 1957 mRNA 0.55 6 27007494 27019893

Neighbor

gene id symbol gene type direction distance location
LOC122341528 si:ch211-120g10.1,si:ch73-364h19.2,LOC107665693,LOC107548722,LOC107558873,LOC107748865,LOC107654584,LOC108435881,LOC107743034 coding upstream 17463 26983161 ~ 26990031 (+)
si:ch73-364h19.1 si:ch73-364h19.1,LOC107665706,LOC107743014,LOC107654587,LOC107558872 coding upstream 25597 26972744 ~ 26981897 (+)
LOC122339380 LOC107743011,LOC107748868,LOC107654588 coding upstream 101457 26860048 ~ 26906037 (+)
st6galnac2 st6galnac2 coding upstream 150564 26849976 ~ 26856930 (+)
si:ch73-366l1.5 mxra7 coding upstream 171734 26812977 ~ 26835760 (+)
nptx1l nptx1l,LOC107569544,LOC107665615,LOC107684232,LOC104929529 coding downstream 159185 27179078 ~ 27184592 (+)
LOC122334820 mgat5b,LOC107743022,LOC107562046,LOC108435872,LOC108274344,LOC107731677 coding downstream 287747 27307640 ~ 27386062 (+)
LOC122335316 NA coding downstream 415919 27435812 ~ 27438843 (+)
rasd4 zgc:153845,LOC103035404,LOC108435855,LOC103354899 coding downstream 438898 27458791 ~ 27460139 (+)
LOC122334777 NA coding downstream 455432 27475325 ~ 27488357 (+)
G23709 NA non-coding upstream 61497 26944207 ~ 26945997 (+)
G23694 NA non-coding upstream 164836 26842189 ~ 26842658 (+)
G23693 NA non-coding upstream 166366 26840773 ~ 26841128 (+)
G23692 NA non-coding upstream 172699 26825108 ~ 26834795 (+)
G23727 NA non-coding downstream 3435 27023328 ~ 27037645 (+)
G23712 LOC107558876 non-coding downstream 9975 27029868 ~ 27044382 (+)
G23733 mcrip1,fam195b,LOC107654575 non-coding downstream 27045 27046938 ~ 27047525 (+)
G23713 NA non-coding downstream 29795 27049688 ~ 27053794 (+)
G23840 NA non-coding downstream 229532 27249425 ~ 27252114 (+)
G23695 NA other upstream 160137 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 206093 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 234591 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 301763 26650829 ~ 26705731 (+)
LOC122341778 gid4,LOC107724729,LOC107555661,LOC107713949,LOC107559524,LOC106601817,LOC101065567 other upstream 1054747 25948054 ~ 25952747 (+)
LOC122335546 NA other downstream 261934 27281827 ~ 27282406 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 1495750 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 1572911 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 1687138 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 1778421 28798314 ~ 28808828 (+)

Expression


Co-expression Network