rrp7a (LOC107673310,LOC107591059)


Basic Information

Item Value
gene id rrp7a
gene name LOC107673310,LOC107591059
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8227784 ~ 8229614 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235764.1
AGAACTACAATTCCCAGAAGCCGCTGTCTGTTTCCGGTGACGTATGTAAACTGTAAATGAAGATGGCGCTGTCCGGAGATCAACACGCGTGTGTCATACCTGGAGGTTTTACTGtgCTGTCTCTGAGGTTCAGTGAGGATGACGCTCATGCTGCTcttcatcagctgtttgttAAAGAGCACCGGGTTCGATCGGAGTCCAACACGAACCGACCGCTGGACCGAACACTGTTCGTTCTGAACGTTCCTCCGTACTGCACTGAgagtgttATATCGGACATCTTCAGCCGCTTCGGTCCGGTGCAGTCTGTGGAGCTGAACGAGAAGCCAGGAGCGTCCGAAGTGAACCACAGCAGTTTGTCCAGATTCTTCATCCCCAGACAGAGACAGtgtttcAGAGTGGCCTACATCGTGTTCCAGCACCCGTCTGGAGTGAACGGCGCCAAGCAGCACCCAGCACACACCCCACTGACCGTCTGCAGCGGACACACACCCCTCAGAACCGGCATAcacaagtggaTCCAGCAGTACTCAGACTCACTGTTCAGGGCCTCATCGCTGCAGCAGGATGTGGATGAGTTCATGAAGGACTACGACACACAGAAGAAGAAGGAGGCGGAGCGTCAGAAGCAGGAGGCggagcagcagcaggaggatgaggagggcTGGGTGAAGGTGACGAAGGGCAGCCGAGGAGTGAAGGTCCGCCCACACAGCGAGACGGCCAATGAGAGGACGCTTCAGAAGGAGCAGGGGAAGAAGGAGCGCAAGGAGCTGCTGAACTTCTACACGTGGCAGCACcgaaacacacagaaagaacATATCGCTGAGCTCAGGAAGAAGTTTGAAGAGGACAAACAGAGGATCGCTGTACTGAGAGCACAGAGGAAATTCAGACCCTACTGACTCATCATACCCACAATGCTTTGCACCTTGTACTGTTTGGTTACATGAacattaatttgtaataaagtCTACAGTGAGTCAATCA

Function

NR:

description
ribosomal RNA-processing protein 7 homolog A

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K14545 RRP7; ribosomal RNA-processing protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235764.1 True 990 mRNA 0.53 7 8227784 8229614

Neighbor

gene id symbol gene type direction distance location
poldip3 poldip3,LOC107661083,LOC107580331,LOC107714893,LOC107666602,LOC107579899 coding upstream 430 8219924 ~ 8227354 (+)
ndufa6 ndufa6 coding upstream 20703 8201599 ~ 8207081 (+)
triobpb triobp,LOC107574640,LOC107721687,LOC107661081 coding upstream 27306 8189453 ~ 8200478 (+)
LOC122339678 NA coding upstream 38491 8184548 ~ 8189293 (+)
nol12 nol12,LOC107676179 coding upstream 46047 8178514 ~ 8181737 (+)
wbp2nl wbp2nl,LOC107569878,LOC107661077,LOC107670540,LOC107749952,LOC107568364 coding downstream 66518 8296132 ~ 8300760 (+)
LOC122341286 NA coding downstream 263807 8493421 ~ 8494226 (+)
LOC122341287 LOC107758354,LOC107569871 coding downstream 264081 8493695 ~ 8498279 (+)
LOC122341872 bglap,LOC107746533,LOC107676398 coding downstream 322472 8552086 ~ 8556310 (+)
ddx47 ddx47,LOC106601200 coding downstream 335786 8565400 ~ 8575713 (+)
G18010 NA non-coding upstream 10567 8215252 ~ 8217217 (+)
G18025 fam234b,LOC107576065 non-coding upstream 10753 8216524 ~ 8217031 (+)
G17990 NA non-coding upstream 82759 7984480 ~ 8145025 (+)
LOC122331402 NA non-coding downstream 82775 8312389 ~ 8314490 (+)
G18055 NA non-coding downstream 244679 8474293 ~ 8490417 (+)
G18092 NA non-coding downstream 442047 8671661 ~ 8675886 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding downstream 651584 8881198 ~ 8882122 (+)
G18303 NA non-coding downstream 1020485 9250099 ~ 9250630 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 74890 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 167927 8056659 ~ 8059857 (+)
G17988 si:dkey-182i3.10,LOC107718276,LOC107690448,LOC107683827 other upstream 261590 7964749 ~ 7966194 (+)
LOC122341279 LOC107730542,LOC107679029,LOC107563335 other upstream 264808 7960071 ~ 7962976 (+)
G17985 ighv4-5 other upstream 276420 7950854 ~ 7951364 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other downstream 30470 8260084 ~ 8563379 (+)
G18048 NA other downstream 283735 8513349 ~ 8742302 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other downstream 314677 8544291 ~ 8551151 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 750977 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 780436 9010050 ~ 9012178 (+)

Expression


Co-expression Network