xylt1 (xylt1,LOC107567884,LOC107729195,LOC107686990,LOC107590574,LOC107690267,LOC107733871,LOC108439755)


Basic Information

Item Value
gene id xylt1
gene name xylt1,LOC107567884,LOC107729195,LOC107686990,LOC107590574,LOC107690267,LOC107733871,LOC108439755
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19203479 ~ 19261885 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235770.1
ctctctctctcctccagcgGAGCCCTTGCCAAACgcccctctctccctccctctccacGCTTCTCTCGCGTCGCGGAGCCACAAAGCGGACCGTCGGCGCACGGCAGAGGCAACTCGCCGCTTCAGGGTGAAGATGTACGGCGGTCTGTGCGCCCGTAAGCTGGCTCGCCGGTCGCGGTCCGCGTTAATCGCCGCGCTGACGGTGCTGCTGGTCCAAACGCTCATCGTGTGGAACTTCAGCAGTCTGGACACCGGAGAAGAGCGAAAAGACAACGGCAGAGAGAAGAGGGACCGGATCGGCATCAACAAAGCCTACAGCGAGTATCAGAAGAGCGGCTTCCAGAAGAGGCATCAGCAGCCGCCGCTGGGGAAAGCGTCCAATCGACACAAACAGCAACCGGACGGCTACTACTCGCATCGGCCCAAGGAGAAAGTCCGCGTGGACAGCAACAATGAAAACTCCGTTCCCAAAGACTTTGAGAATATAGACAACAGTAATTTCGGTGCTCGTTCGCAAACACAGAGACACCCGCCCGGCAAGCACAAACAAGGCCTTCTGGAGAAGGCCCATGCGCAGCAAACCCTGAGCAAGAACTCCAACGAAGTCATTCAGTATGCACAGAGCAAAGGTGGCTTCAATCAGACGCGCGCTGAGTTTCAGCGGAGGGCCAATCCCACCCTCCGTCCACAGCAGTCCCAGCAGCACCGGCACCACCTTCAGCAGGCCAAGCGATCGGCCGCGCCCACCGCCGACATCAAGTACGATCAGCCGCCCAAATGTGAGATCAGCGGAAAAGAGGCCATCTCTGCCCTTTCTCGCGCCAAGACCAAGGAATGCCGGCAGCAGATAGCGGAGGTTTACTGCCGCCACAAGGAACGCCAGCTCATGCCCGAGAAGGTCACCCGTTACTGCCCCGTAGAGGGCAAAGTGAATATGAATGTGCAGTGGGAGGACGACTCTATGGAGACTGTGCCTGCGGTACCGGTGCGGATAGCCTTCATGTTGGTGGTCCACGGACGGGCTTCACGCCAGGTGCAGCGTCTCTTCAAGGCCATATACCACACCTCTCATTTCTACTACATTCATGTGGACCAGCGATCCAACTACCTGCACAGGCAGATGGTGGCTCTGGCTCGCCAGTATCCCAACGTCCGGGTCACACCGTGGCGCATGTCTACGATATGGGGCGGTGCCAGTCTGCTTACCATGTACCTGCAGAGCATGAAGGACCTGCTGGCCATGCGAGATTGGTCCTGGGATTTCTTCATCAACCTGAGTGCTGCTGATTACCCAATCAGGACCAATGATCAGCTGGTGGCCTTCCTGTCCAAATACAGAGATATGAATTTCATCAAGTCCCACGGGAGAGATAACGCTCGATTCATCAGAAAACAAGGTTTGGACCGGCTGTTCTTCGAGTGTGACACCCATATGTGGCGACTTGGAGACAGGAAAATTCCAGAAGGCATATCCGTGGATGGAGGCTCTGACTGGTTTCTGCTCAACCGAATGTTTGTGGAGTATGTCATCAACTCTCAAGATGACCTCGTGACCAACATGAAACGTTTCTACGCATACACACTCTTACCTGCGGAGtCGTTCTTCCACACGGTCCTGGAGAACAGTCCGCACTGTGAGAGCATGGTGGACAACAACCTCCGCATCACTAACTGGAATCGAAAGCTGGGCTGCAAGTGTCAATACAAGCACATCGTGGACTGGTGCGGCTGCTCGCCCAACGACTTCAAGCCCTCCGACCTGCCCCGTTTCCAGCAAACCACCAGACCCACATTCTTCGCAAGGAAATTTGAAGCCAGTGTAAATCAAGAGATTGTGAATCAGCTGGACGCCTTCCTGTTCGGGAGCATGCCCCAGGGCACGCCGGGTCTCAAGGCCTACTGGGAGAATGTTTTTGATGAAGCGGATGGTATTCACAGCCTGTCCGACTCACATCTCACTCACTATCATGCCTTCGCCCGATTGGGTCTGGCACGGACTGCCAACTCCTTACAGGGCGACACCAGTGACAACACCTGCAGGTATTTTGCCATGGGACATCCTGTGTCTGTCCATACCTACTTCCTGTCTGATGAATTCCAGGGATACCTGGTCAGGCATCATGCCACCAACCTGGCAACCAGTAAACTGGAAACCCTGGAGACCTGGGTCATGCCCAAACAGTTCTTCAAGTTCACCAATCCACCCAATACCTTCAACAGGCTGCAGTTTGCAGAGATTGGAACAGACTGGGACGCTAAGGAAAGGATATTCCGGAACTTCGGGAATCTGATGGGACCCATGGACGAGTCTGTGGGCATGCAGAAATGGGGGAAGGGCTCAAACGTGACCGTGACCGTGGTGTGGATTGACCCCACCAATGTCATCGCCGCCACCTACGACATCCTGATCGACGCCAGTGCTGAGTTCACTCACTACAGGCCTCCTCTGAACCTGCCCCTGCGGCCCGGCATGTGGACCGTACGTGTGCTGCACCACTGGAGCCCCGTGGCAGACACACGCTTCCTCATCACTCCCCTCACCCACCACAAACACCTGCCTATACGCCACGaggATGCTTTAAGAACGCACAACGGGCCGGCCAAGAACAGCTACATGGAGCAGAGCTTCCACGGCCTGAACCCCATCCTGAACATCCCGGTGCACCTGGGTCAGGTGGAAGCGGCCGAACACAACGCAGAGCTGACGGGGTCCGAGCTGGAGCGCTGGGTGGACAGTCTGGTGGGCGAGGTGTGGTCGGCTGTGGACGTGTGTTCAACGGGCCCCAGTGGCTGTCCCGTCATGCAGACTTGCAGAGAAACGCTGTGGAGCTCTCTCAGCCCGGACCCAAAGTCCCAGCTGGGCCCACCCAAAACCAACGGACGAATCAGGTAGCAGCATTCACTGCCCTGAAGACTCGCCTTTTTCATTTCTTACGCcatttggtttttattatttattttccagcaTCGCTCATGTGAATATGAGCAAAATGGCCCTCTCTCAAACACAAGACACAGGGCCTCGAAAGTGTATGCTGGCAAGTTTTGatgattttaatttcaattttaatttttttttttttaatgtgtgccCTCTCAAACTCCGAGTGCTCTAGTGATGTGAGTGCTGTCAGGCTtctctatatttaatttattttgattactgTGATTTGAATCTTTGTCAACTGGAAGCAGCAAGTGATGCCTAAATGTAGGAGTCACAGCTGAATGCTGGGATTGGGATTTTAAGCACAGAATGGACCTTAACACTGGTTGTAAGACCAAAAGGTATGTTTGTATAGTATAGTAAGtctctatatttaaaaacaaacacacttgcACCTAATATACGTGATAGAAGAAGCATTTTTCAACCTATACCTTATTAAAACCAATGTTTCAGATCGTATATAACTGTCTGTAGCACAAcgtttctttaattttttcagaaaaatagtACCATTTTTACAAGGCTTTCACTGGATCAAATGCAATCAAACAGGCTTTTAAAACCTTCAA

Function

symbol description
xylt1 Predicted to enable protein xylosyltransferase activity. Acts upstream of or within embryonic cranial skeleton morphogenesis and proteoglycan biosynthetic process. Predicted to be located in Golgi membrane. Is expressed in cartilage element; forebrain; and opercle. Human ortholog(s) of this gene implicated in Desbuquois dysplasia; pseudoxanthoma elasticum; and type 1 diabetes mellitus. Orthologous to human XYLT1 (xylosyltransferase 1).

NR:

description
PREDICTED: xylosyltransferase 1-like

GO:

id name namespace
GO:0030166 proteoglycan biosynthetic process biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0030158 protein xylosyltransferase activity molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00771 XYLT; protein xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235770.1 True 3519 mRNA 0.53 11 19203479 19261885

Neighbor

gene id symbol gene type direction distance location
LOC122341328 si:dkey-202l16.5,LOC107690339,LOC107733837,LOC107685903,LOC107590608,LOC107729185 coding upstream 74831 19122323 ~ 19128648 (+)
LOC122329464 rps15a,RPS15A,MGC114789,LOC107686992,LOC106589173 coding upstream 243986 18956030 ~ 18959493 (+)
LOC122342072 psmc3ip,LOC107721526,LOC107654517,LOC107601296,LOC107720012,LOC107590372,LOC107688134 coding upstream 483757 18714925 ~ 18719722 (+)
retreg3 fam134c,LOC107601294,LOC107590373,LOC107720010,LOC107654515,LOC107688130 coding upstream 491844 18704513 ~ 18711635 (+)
LOC122341319 psmc3ip,LOC107601296,LOC107721526,LOC107654517,LOC107720012,LOC107590372,LOC107688134 coding upstream 629060 18572664 ~ 18574419 (+)
c3h17orf75 zgc:153240,LOC107690268,LOC107567861,LOC107729180,LOC107755588,LOC107590573,LOC107687012 coding downstream 30916 19292801 ~ 19297531 (+)
ppp4ca ppp4c,LOC107729194,LOC107755586,LOC107690278,LOC107590569,LOC107567834 coding downstream 115090 19376975 ~ 19380629 (+)
mapk3 mapk3,LOC107686994,LOC108411041,LOC107567791,LOC107690275,LOC108256206 coding downstream 123137 19385022 ~ 19393198 (+)
gdpd3a gdpd3a,LOC107590565,LOC107686997,LOC107729175,LOC107755582 coding downstream 132846 19394731 ~ 19399272 (+)
si:ch211-11k18.4 si:ch211-11k18.4,ehd3,LOC107567764,LOC107755580,LOC107690281,LOC107590563,LOC107687000,LOC108411040 coding downstream 141677 19403562 ~ 19408684 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding upstream 348936 18854109 ~ 18854543 (+)
LOC122341661 LOC107601299,LOC107654457,LOC107720081,LOC107688136,LOC107721482 non-coding upstream 458894 18574687 ~ 18744585 (+)
G21180 NA non-coding upstream 499796 18702584 ~ 18703683 (+)
LOC122331012 NA non-coding upstream 548764 18652361 ~ 18654715 (+)
G21076 NA non-coding upstream 1044933 18158171 ~ 18158546 (+)
G21215 NA non-coding downstream 42967 19304852 ~ 19305058 (+)
G21239 LOC107687002 non-coding downstream 176122 19438007 ~ 19440646 (+)
LOC122341657 NA non-coding downstream 193541 19455426 ~ 19459635 (+)
G21269 aclya,LOC107687019,LOC107729187,LOC107590593,LOC107755575,LOC107567706,LOC107690323 non-coding downstream 209114 19470999 ~ 19472687 (+)
G21246 NA non-coding downstream 221616 19483501 ~ 19484384 (+)
G21202 NA other upstream 210245 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 327352 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 361719 18828665 ~ 18841760 (+)
G21183 LOC107720013,LOC107721528,LOC107688135,LOC107654518,LOC107601298 other upstream 469714 18733165 ~ 18733765 (+)
G21182 LOC107654518,LOC107601298,LOC107721528,LOC107688135,LOC107720013 other upstream 471381 18725961 ~ 18732098 (+)
G21213 NA other downstream 29560 19291445 ~ 19292341 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other downstream 137523 19399408 ~ 19403176 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 802385 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 832966 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 923650 20185535 ~ 20195721 (+)

Expression


Co-expression Network