LOC122342001 (cpt1cb,LOC107747872,LOC107667163,LOC100333227,LOC107730771,LOC107689673)


Basic Information

Item Value
gene id LOC122342001
gene name cpt1cb,LOC107747872,LOC107667163,LOC100333227,LOC107730771,LOC107689673
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 8835129 ~ 8854765 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235775.1
CATAACCTCAGGTATGTGTTGCTTTCTGGAAGTGAAAGGGTGGAGATCACCTGAAAGTTTACATCTGTCAAAAACCGCATTCAGTCTTTAACTTGTTCCCGAACTACCATTCAGATTTACAGACAGCGCCTCATATAGTTTGTGTCTATAGTGATGGCAGAGGCTCACCAGGCAGTAGCGTTTCAATTCACAATCACTCCTGAGGGCATCGACCTACATCTCTCCTACCAAGCCCTTAATCAAATCTACCTCTCCGGACTGAGATCCTGGAAGAAACGCATCAGCAGGATTAAGAACAGAATCATTAAAGGCGTATACCCAGCTAGCCCATCCTCTTGGCTTTTTGTTGTAATAGCAATCCTGGCAACTATCTACATGCAGTCTGATCCATCTATGGGCCTCATTGCTAAGATTCAGGAGCACCTGCCCCTCAGTCTGTCATTGAGTGCTCAAGGCCAGACTGTGCTGTCGGTGCTGTTGTTCAGTACTCTGCTGTGGATGTCTCTCATTCTGGCTCTGAGGTTCTGCCTAAAACTTCTCCTATCATACCACCGATGGATGTTCGAGCAACATGGACGCATTTCTACCAAGACCAAAGTCTGGGCGACCCTAGTTAGGTTGCTGTCTGGTAGAAAGCCATTACTGTACAGCTATCAGACATCTTTACCACATCTGCCTGTACCTCCCATTAAAGAAACTTTGGAAAGAtaTCTGGAGTCAGTGAAACCACTGCTTGATACGGCTGGTTTTCAGCGAATGACAAGACTGGCTGCTGAGTTTGAGAAAAGTCTGGGTAACCGGCTACAAAAATACCTCAAACTTAAAGCGCTGTGGGCCACAAACTATGTTAGCGACTGGTGGGAAGAGTATGTTTATCTGCGGAGCCGGGGTCCCATTATGGTCAACAGTAATTATTATGGCATGGATTTCCTGTATGTGTCACCAACGACTAATCAGGCAGCTCGAGCTGGGAATACCATCACAGCCCTGTTTCTGTATCGCCGCAAAGTCAATAGAGAGGAGCTCAATCCTAGTCGTATTCCTGGTACAGTCATACCGCTGTGTGCAGCTCAGTGTGAGCGCATGTTCAACACCACGCGCACGCCGGGAGAGGAGactgATGTCCTGCAGCATTGGCAGGACAGTGAATTTGTGGCCGTGTACCACCGGGGCCGGTATTTCAGATTATGGGTTTACCGAGCAGGACGCCTGCTGTCACCCAGAGAGATCCAGTACCAGATTCAAAGGATCTTGGACGAACCCTCACCTCCTTCTCCAGGAGAGGACAAACTAGGGGCACTGACAGCAGGAAACAGAATTCCTTGGGCTCAGGCCAGGAAAGAGTTCTTCAGCTCAGGACTGAATAAGAGGTCTCTGGACTGCATTGAAAAGGCGGCGTTCTTCGTTGCCCTGGACGACGACGAGCAAGGCATGAGGGGAGATGATCCTGCCGGCAATTTAGATCGCTATGCCAAGTCCCTCCTGCATGGCAAATGCTACGACAGgtggtTTGATAAGTCGTTCACTGTGGTGGTGTATAAGAATGGCAAGAACGGCCTCAACGCTGAACACTCCTGGGCAGACGCTCCTATAATGGCTCACGTGTGGGAGtATGTGATGACAACCGATAGTTTCCAGTTGGGTTATAATGAAGAAGGTCACTGTAAAGGAGACGTGGCCTCCTCCCTGCCTCCACCTACTAGACTAACCTGGGACATACCTGCCGAGTGTCAGGAGCGTATCGAGCGCTCTCTCGCCGTAGCTCAGGCTATAGCCGATGACGTTGACTTCCATGTGCTGCCGATACAAGAGTTTGGAAAAGGTGCCATCAAAAAGTGTAAAATCAGCCCGGATGCCTTCATTCAGATCGCGCTACAGTTGGCCTATTTTAGGAATCGAGGCACGTTCTCTCTGACTTACGAAGCGTCTATGACTCGTTTATTCCGCGAGGGCCGGACTGAGACGGTGCGCTCCTGCACCAGCGAGAGCTGTGCCTTTGTCAGAGCCCTGGAGGGCGGAGAGAGTAAGGAAGTGTGTCGGCGTCTCTTCCGCACGGCATCTGAGAAACACCAGAATCTGTACAGGATGGCGATGACGGGAGGAGGAATAGACAGACACCTGTTCTGCCTCTACATCGTGTCCAAATACCTGGGAGAGGAGTCACCGTTCCTTAAAGAGGTGCTCTCAGAAACGTGGCGTCTGTCCACCAGTCAGACTCCTCTTCAGCAGGTGGAGCTGTTTGATTTCGTTAACCACCCGGAGTACACCACCTGTGNNNNTGTTGCAGATGATGGTTATGGCGTGTCTTATATCATCATCGGAGAAAACATGATCAACCTGCACATTTCCTGCAAACACTCTTGTCCTCAGACCGTTAGTACACTAGCATGCGCTTTTTTCATTACCATTTTTCTGAAACCATATGGAATTAAAAAATTGAGACTGAATTtataaaatggctttttgtTAAGCTAGTTAGGATAAGCACAaactaaactttatttaattggaaaaaatatatatataaatgctacaTAATGAACTTTAAACTTAAGCTTAAATTACAACAAGAGCTATTTCCTTGGCAGGTAACTGATATATaacaaatgtactaaatattaaatctgAGG

Function

NR:

description
PREDICTED: carnitine O-palmitoyltransferase 1, liver isoform-like

GO:

id name namespace
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235775.1 True 2630 mRNA 0.48 18 8835129 8854765

Neighbor

gene id symbol gene type direction distance location
LOC122330982 emp1,LOC107573034,LOC107698066,LOC107732522,LOC107678994 coding upstream 126847 8704444 ~ 8708282 (+)
LOC122341890 grin2bb,LOC107725336,LOC107573036,LOC107698059,LOC108425688,LOC107758357,LOC107661082,LOC107676879 coding upstream 174613 8616280 ~ 8660516 (+)
ddx47 ddx47,LOC106601200 coding upstream 259416 8565400 ~ 8575713 (+)
LOC122341872 bglap,LOC107746533,LOC107676398 coding upstream 278819 8552086 ~ 8556310 (+)
LOC122341287 LOC107758354,LOC107569871 coding upstream 336850 8493695 ~ 8498279 (+)
LOC122333359 hs3st4,LOC107703335,LOC107568293,LOC107741793,LOC106601107,LOC105013403,LOC106607349 coding downstream 121559 8976324 ~ 8979876 (+)
colgalt1a colgalt1,LOC107672476,LOC107757371,LOC107711180,LOC107670492,LOC107567242,LOC108429625,LOC108257422 coding downstream 158330 9013095 ~ 9021646 (+)
LOC122341294 gmip,LOC107672475,LOC107670530,LOC107587992,LOC107711163,LOC107757342 coding downstream 169613 9024378 ~ 9041533 (+)
lmx1al lmx1al,LOC107672514,LOC107670451,LOC108429662,LOC108256788,LOC107567229 coding downstream 188673 9043438 ~ 9064147 (+)
atp13a1 atp13a1,LOC107711248,LOC107672485,LOC107757369,LOC107670516 coding downstream 212881 9067646 ~ 9083475 (+)
G18092 NA non-coding upstream 159243 8671661 ~ 8675886 (+)
G18055 NA non-coding upstream 344712 8474293 ~ 8490417 (+)
LOC122331402 NA non-coding upstream 520639 8312389 ~ 8314490 (+)
G18010 NA non-coding upstream 617912 8215252 ~ 8217217 (+)
G18261 hs3st2,LOC107550309,LOC107703334,LOC107741797,LOC107574133,LOC107674621 non-coding downstream 26433 8881198 ~ 8882122 (+)
G18303 NA non-coding downstream 395334 9250099 ~ 9250630 (+)
G18305 NA non-coding downstream 407205 9261970 ~ 9262239 (+)
G18425 LOC105357980 non-coding downstream 558879 9413644 ~ 9414007 (+)
G18429 NA non-coding downstream 629670 9484435 ~ 9484736 (+)
G18048 NA other upstream 92827 8513349 ~ 8742302 (+)
LOC122342110 wbp11,LOC107751605,LOC107678993 other upstream 271750 8260084 ~ 8563379 (+)
LOC122331854 mgp,LOC107574611,LOC107569876 other upstream 283978 8544291 ~ 8551151 (+)
LOC122341282 LOC107690132,LOC107722730,LOC107572760 other upstream 682235 8150743 ~ 8152894 (+)
G18008 LOC107572757,LOC107745393,LOC107676178,LOC107574638,LOC107690127 other upstream 775272 8056659 ~ 8059857 (+)
LOC122341292 LOC107729471,LOC107687638 other downstream 125826 8980591 ~ 8988810 (+)
pgls pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 other downstream 155285 9010050 ~ 9012178 (+)
brd4 LOC107711252,LOC107587947,LOC107672460,LOC107670433,LOC107757365,LOC107563328 other downstream 283702 9138467 ~ 9183290 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other downstream 329634 9184399 ~ 9185660 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other downstream 838184 9692949 ~ 9697915 (+)

Expression


Co-expression Network