rabep2 (LOC107690284,LOC107567756,LOC107755579,LOC107729174,LOC107687001)


Basic Information

Item Value
gene id rabep2
gene name LOC107690284,LOC107567756,LOC107755579,LOC107729174,LOC107687001
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19409591 ~ 19417891 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235801.1
ttaaaaacaaaacaataaatgtatggCTTGCAATCAAAGTGGTGCACTGTACACGAGCGAATCACTCTTTTGAATCGTTTCTTTGTGCCGAATCTGCCAAAACGGTTCACTTGATTATTTTGCTCTGATTCAAAACAATCATGTCAAATCCTCCTTCATTTACCATGACCGAAAACTTCATTAAAATTGCATGCAAATACATCGGTCCACCGGGGaaccttttttcccccctgcaTTAGGCAACGTCTTTTTTGACAGCAGTGGCATTTTTAAACGGTTTCTACAAATATTCTAGATGAAAAacatatagaaaacatttttttttctttagttcaATTAGACGACTGACCACAGGTTTTGGAAAATATTCAAAGCCATCTAAGCTACGTATTTGCATATATTCTCCAAGGCGGAGCGCGCGGGTAGCTCGCGTCCTCTCGGGGCCCGTCTCAAATCCTAGCCCGCCGGGCCTCGCTACCTAGGCAGCATCAGCTCGCGCCCGAGGCCCGAAAGCGCGGTCTGTCTAGTCAGCTCACTAGATTTTGAAACAGTCCCCGCGTGTGTGCGGCTCCAGGGAGGATGGTTAGGTAACATCCGCAGCGCTGAACCGGGAAAGTTGTTTCCTGAACTCTTGGCGCAGTTTTGTTGAAGCCCGGCCCTGCCGCACTTCACAGTCGCACAGGAAAAGAAAGACGGATGCGGGCGAAGGGAGGCACATCGAAACGAAAGGACAATATCGAGACAAATGACGCGAGACCATGGACGCGTTGGACACGACAGCATCGCGCGGGGACGAGCAGCACGACGTGGGAGCTGAGGCAGACCTGCAGACGCAGCTAATCGAGTGTCGAGCTCAACTCGAGCACTGGCAGGGCGTGGCGAGGATCTGCGAGCTTAGCAAGCAGGAGGAGCTCCAGGAGCTGCAAAAACAATGCGACCAGGAGATTCAGTCCTTGCAGGAGGCTCTGAGAGAAACCGCTGCTCAGTATGAGGTCAGAATATCTGTTCTGCAGTCAGAACGAGCACAGTGGAGGAGAGCCACTTCATCCCAGAACACTAAGGGTATCTTTAAAAAGGTGGAGGGTAGCTCTCCCCCACAGGGTGGTTCCCCTCCCCTGCGGACTGCTGAGCATGAGGGGTCAGGTTCAGACTCTGATCCACTGGAGCTGTTGGCGGAGACGTCAGATGCAGAGACAACAGGCCTTATGATGGACTACTTTCCCCAGCACTGTGACTCTGCCTCCCTGTCTTCTTTCTCTCTGGACACGCCCTCTTTGCCCCGACACCGGCCCCCTCAAGACGACACCGCCTCCCTGGTGTCCACAGGAACCCTGGTGCCTGAAGCCATCTACCTGCCACCTCCGGGCCACAGGCTGGTCACGCATGCAGACTGGGACAAACTGCAAGCACAACTTGTAGAGCTTCAAGAGGAGCTGACAGAACTTCAAAAGCAGAAAACTGAGCTGGAGAAAGAACTGGATGTGCAAAGTACAGAGACACAAAAACAGTTGTCGGTACTTCAGTGTCAGGTGCAAACCTCTGAAACCCTTCTTCAAGACCTACAGAAATCATTTAGCCAGTCACAAAATGCGGTCCAGAGCAGATTGGCGGAGCTGTCTTACTCTCAGAAGAGAGTTTGTAATGAGCTCTCCAAGTTGAAAGGTGAAGACGCTGATGTGGATGAAAATAGCCTACCACCCCACAGTCCAACACTAGAGGCAGCTCACTGTGAGGAGAGACTTCGTATTGAAATAGTCAACTTACAGGATCAGCTGGAGACACGCACGGAAGAAAGCGAAATTTTAGAAGTTAAGCTTGCCAGCCTCACAGTAGAGACAGACCGCATACAGATCCAAAAGGAAAAGCTGGAGGCTGAGCTGCAGGAGTGTCGAGTGGAAGTGCAGGGTCTGCGGGTGGCGCTTTCTCACCTTCAGAAGGACAACAGATCTCACGTCCAGGAGAAGGCGGTACTGCAGCAGCAGTGTTTAGAGTACCGCAGTCAGGTGATCAGTCTGCGCTCTCAACTAGATACTAGTCAAACCGTGCAGAAGGATTTCGTGCAGCTGTCGCAGTCACTGCAGGTGAAATTGGAGCAGATTCGCCAGGCAGAGTCTTTAAACCAAGTGAAGCACATTCTAGGGGAGGAGATTGAAGACGCTGATTTGCCTGCAGATGCCACATGAAACAACAAAAGTATAGGTGATGTTTTGGCCAACCAAAGGGAAGAGACTCTGGTGGATAAGGAGGTGGTCCTCAAAAAGGGCCAAGCTGAGGTGGGCTGCCTACACGAAAAAGAAAGCTACAGTGACATGAAGAACTAAACGGCCTTTCCTGCACTCATGAGTCCACCATTCTTCTAATGAGCTCAAACCATATGGGGAAAACACGATTCCTTATCAATTTGGACAAACTGGAATTGCTAATACTTGAATTTTGTGAAAAGCTAATACACTGACTACTAGATGACTAGACTTAATTCCACTGCAGTGTAAGTTTTATCTTCCTGGCCTTCCTAATAGATACTGTTGGATATATGTTACTCATCTTCAGCACCTGTCACcagcaaaataaaaaccaaaaacttaCTGTGGATGGATACTGGGGGCAATTGGTACTTTTAGATTATGTATTCTCTTCAGATTACTACTGATCTACCTGTTATCACATGTGCCAAAGTAACACTATCAATAATGAGAAGGACTATCATAGTATTTAACGTCATTCCACATAATATCCAATTATTTTTCGTCTTTGTATGATAATTCTTTCAGCTAACTAGTAACTGCATTATAATTGTTTGAAATGAGATGCAACCTTTTTAATACCATATTTCAATAAACAAAGTGTAATTAGCTGTTGACTAAAtgctagttttaaaaatatatatgtgttttaaaGATTACATCTTTAAATTCATACCATTTTTATGTTACAATTACCCCCAGTTTCAAAGCCATGATGAAATCTTTTGTGATATCCACCAGCAACAGTGTTAGCATATTGACTTGAAGCCAACAACCAAGAGatacaataaatattacttgaaattaaatacatttagtaatattagaaaatattgcaccgtaaaatatttttgtagctGAAATGGTTTTTGTTGAAACCATTTCAAAGTTGGAACTTCTGCTGAAAAGACAGTTGCCCCCTGCTAGAATACTACCTACCCTACTATAATTATTTGTGCATTCAATTTAAGGCCAAAGTCACTTTACTCTAAAGAGCCATCATTTCATTATGAAGCATCTGGTGCCTGAGCCAGTGAACAGTGGAAGATCAATGTATGTTAAAGAGATGATGAAACACTGTTTGAATGGggcaaataaatgttaattcatatttatgtagCACAATGTTAGTAACAAATCTGAGTGCATTACatatgtatgaaaaataaagattaaactaaaaaacaa

Function

NR:

description
rab GTPase-binding effector protein 2

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process
GO:0005096 GTPase activator activity molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K20130 RABEP2; Rab GTPase-binding effector protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235801.1 True 3431 mRNA 0.45 13 19409591 19417891

Neighbor

gene id symbol gene type direction distance location
si:ch211-11k18.4 si:ch211-11k18.4,ehd3,LOC107567764,LOC107755580,LOC107690281,LOC107590563,LOC107687000,LOC108411040 coding upstream 907 19403562 ~ 19408684 (+)
gdpd3a gdpd3a,LOC107590565,LOC107686997,LOC107729175,LOC107755582 coding upstream 10319 19394731 ~ 19399272 (+)
mapk3 mapk3,LOC107686994,LOC108411041,LOC107567791,LOC107690275,LOC108256206 coding upstream 16393 19385022 ~ 19393198 (+)
ppp4ca ppp4c,LOC107729194,LOC107755586,LOC107690278,LOC107590569,LOC107567834 coding upstream 28962 19376975 ~ 19380629 (+)
c3h17orf75 zgc:153240,LOC107690268,LOC107567861,LOC107729180,LOC107755588,LOC107590573,LOC107687012 coding upstream 112060 19292801 ~ 19297531 (+)
LOC122341749 LOC107687002 coding downstream 25329 19443220 ~ 19445897 (+)
hsd17b1 hsd17b1 coding downstream 29280 19447171 ~ 19449662 (+)
si:ch73-141c7.1 si:ch73-141c7.1,LOC107567723,LOC107590559,LOC107687003,LOC107729197,LOC107690287 coding downstream 33520 19451411 ~ 19454315 (+)
nkiras2 nkiras2,LOC107755561,LOC107590605,LOC107687022,LOC107729182 coding downstream 91197 19509088 ~ 19511507 (+)
aspdh aspdh,LOC107754162,LOC107731187 coding downstream 499779 19917670 ~ 19921271 (+)
G21215 NA non-coding upstream 104533 19304852 ~ 19305058 (+)
G21151 NA non-coding upstream 121942 19258917 ~ 19287649 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding upstream 555048 18854109 ~ 18854543 (+)
G21180 NA non-coding upstream 705908 18702584 ~ 18703683 (+)
LOC122331012 NA non-coding upstream 754876 18652361 ~ 18654715 (+)
G21239 LOC107687002 non-coding downstream 20116 19438007 ~ 19440646 (+)
LOC122341657 NA non-coding downstream 37535 19455426 ~ 19459635 (+)
G21269 aclya,LOC107687019,LOC107729187,LOC107590593,LOC107755575,LOC107567706,LOC107690323 non-coding downstream 53108 19470999 ~ 19472687 (+)
G21246 NA non-coding downstream 65610 19483501 ~ 19484384 (+)
G21275 NA non-coding downstream 71882 19489773 ~ 19490022 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 6415 19399408 ~ 19403176 (+)
G21213 NA other upstream 117250 19291445 ~ 19292341 (+)
G21202 NA other upstream 416357 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 533464 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 567831 18828665 ~ 18841760 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 646379 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 676960 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 767644 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 1464307 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1877811 21295702 ~ 21414286 (+)

Expression


Co-expression Network