si:ch211-11k18.4 (si:ch211-11k18.4,ehd3,LOC107567764,LOC107755580,LOC107690281,LOC107590563,LOC107687000,LOC108411040)


Basic Information

Item Value
gene id si:ch211-11k18.4
gene name si:ch211-11k18.4,ehd3,LOC107567764,LOC107755580,LOC107690281,LOC107590563,LOC107687000,LOC108411040
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19403562 ~ 19408684 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235802.1
ATCAGAACCACCTCGAGAGAAACGCATAAAGACTACAACTCCCACTGCTCTTTGCGCATATCGGTGACGTGGCCAACGTTACCCAGCAGACCGGGGCGATTTGAACATCATTTTGGATCACGTAATTTTGCATCACGATGTCCGGGAAAATCAAAAGCAGGAGTGCTGCAAATGCCGACTCTGGCAGTGTGTCCTGCGACGAGCGTATCTTACGGGACTGCCACCAGATGTACACCGATCCGGATAGCGGACTCATAACAATCGCTCAGACTGTTGGGGTGACCTTGCTGCCTCCCAGAAAAAAGATAACTGTGATGTTGATGGGGAACCACTCTGCTGGAAAGAGCAGCTTTATCAATTGgTATGTGGAGGAGCATATCCAAAGAACGGGAGTCGCTATAGAGACACAGGGCTTCAGCTTTGTTACAAGCGGGCGAAAGAGGGAATCGCTCACGGGAAATGCAACCCTCCATCTCTATCCCCATTTCAAACCACTGCAGGAGTTTAAAGGGGTGTCAGAATACCTCAGCACTGAGATTTGTACTTCACGACAGAAACGCTTCAGCTTGGTGACCTTTGTTGACACTCCTGGTCTAGTGGATGGAGATATGAAGTACCCCTTTGACGTGGATCAAGCTATTCTGTGGCTCGGGGAGCTCTGTGATCTGATCCTGGTCTTCTTTGACCCAATGGGACAGGCTTTATGCAAGCGTACACTCAACATTGTAGAGAAACATAATGAGAAGCAAGGGGACCGTCTCCGTTTTTATCTCAGTAAAGCTGATGAGGCTGGCGGAGAGTCTGATCGACAAagagTTATGATGCAGATTGTGCAGGAGCTTTGTAAGCGTCCAGGACTCAACAAGTGTGGCTTCGACATGCCAACCATCTATGTTCCCAACCCTAATAAGCCCAGTCGATGTGTCAATCAGATAGAGGAGGTGTGTCGCACCATAGAGAAGACCATCAACCAGACGGTGCAGAACACCCTGAACTCACTGGAGAAGGACTGCAGCCTCATCACTGAGGCCATCACTGAGACGCTTGAACATGACAGGCAGTGCAGTGTAGAGAACCGTCGCTCCCGTTTTAAGGGCTGTTTGTTGGGCATGCTGGGGTTCACTGTGCCCCTGCTGCTGCTCGTGACCCTCGTCCTCGGCAGCCTCTCCAAAGATGTGCTGGTGCTCATGCTGGGCAAAAGTGGCATAGAGGCACTCACTCTATATGTGGTTCCTGCAGTGAAGGCGTTTGAATCCTtgtcagcagaggtgcagctgTACAGTTGTGCCGGACTGGTGCTGTTATCCTTCATCTTTATCCTCCTCTCTCGCTTTTCTTTCAGGACCAAACCAACACTCTCTgggaaacaaaagaaacaacttCATCAAAAACTGGAGTATGTTCAGGAGGTAGTGAAGAGCAAAAAGAAAAATCTGTATGAGGAGTACCTGCGTCAGAGTGTGGGTGATCAGGACATGAACTGAGAGGGAATATAGCATTTAAGGATATGGACCGGACCAATACAGCACCCAGAAGTACCACTACACCGCATCTAATACTTCCTATAATGTAGCAGACGCAGAGAAGCTGTTTCTTGGGCACTTACATACTGCTGCTCCTCTAAGCTGTATTTCAGCATTAAATAATGGAGCTGTGGACCAATGCTATgtttcttttggtttttttttctcattgcagTGTAACAATTGTACTGTAAGGAATAGTTGAAGGACCACGTTTGGAGATGGGATAATTCAGAGCATGAATCCAATTGTTTGGCAGTcggtttttaatataataaatttttttttctgccatgtACCTAAAATACTCTATTACCAGAATGACTGAGAAATGAGAAGCCCTTCATTTGACATCAGATTCTTTTGACTTCTGGTGTTTATTCACACCGTTGGCACTTTTAATAGAAACATTGAAACTGGCTTTTGTATGACACGGTTTCCTACGTTTTATTACGTCCCATGCTATTGatgttacaataataaaataataaatgta
>XM_043235803.1
ATCAGAACCACCTCGAGAGAAACGCATAAAGACTACAACTCCCACTGCTCTTTGCGCATATCGGTGACGTGGCCAACGTTACCCAGCAGACCGGGGCGATTTGAACATCATTTTGGATGCAACACGTAATTTTGCATCACGATGTCCGGGAAAATCAAAAGCAGGAGTGCTGCAAATGCCGACTCTGGCAGTGTGTCCTGCGACGAGCGTATCTTACGGGACTGCCACCAGATGTACACCGATCCGGATAGCGGACTCATAACAATCGCTCAGACTGTTGGGGTGACCTTGCTGCCTCCCAGAAAAAAGATAACTGTGATGTTGATGGGGAACCACTCTGCTGGAAAGAGCAGCTTTATCAATTGgTATGTGGAGGAGCATATCCAAAGAACGGGAGTCGCTATAGAGACACAGGGCTTCAGCTTTGTTACAAGCGGGCGAAAGAGGGAATCGCTCACGGGAAATGCAACCCTCCATCTCTATCCCCATTTCAAACCACTGCAGGAGTTTAAAGGGGTGTCAGAATACCTCAGCACTGAGATTTGTACTTCACGACAGAAACGCTTCAGCTTGGTGACCTTTGTTGACACTCCTGGTCTAGTGGATGGAGATATGAAGTACCCCTTTGACGTGGATCAAGCTATTCTGTGGCTCGGGGAGCTCTGTGATCTGATCCTGGTCTTCTTTGACCCAATGGGACAGGCTTTATGCAAGCGTACACTCAACATTGTAGAGAAACATAATGAGAAGCAAGGGGACCGTCTCCGTTTTTATCTCAGTAAAGCTGATGAGGCTGGCGGAGAGTCTGATCGACAAagagTTATGATGCAGATTGTGCAGGAGCTTTGTAAGCGTCCAGGACTCAACAAGTGTGGCTTCGACATGCCAACCATCTATGTTCCCAACCCTAATAAGCCCAGTCGATGTGTCAATCAGATAGAGGAGGTGTGTCGCACCATAGAGAAGACCATCAACCAGACGGTGCAGAACACCCTGAACTCACTGGAGAAGGACTGCAGCCTCATCACTGAGGCCATCACTGAGACGCTTGAACATGACAGGCAGTGCAGTGTAGAGAACCGTCGCTCCCGTTTTAAGGGCTGTTTGTTGGGCATGCTGGGGTTCACTGTGCCCCTGCTGCTGCTCGTGACCCTCGTCCTCGGCAGCCTCTCCAAAGATGTGCTGGTGCTCATGCTGGGCAAAAGTGGCATAGAGGCACTCACTCTATATGTGGTTCCTGCAGTGAAGGCGTTTGAATCCTtgtcagcagaggtgcagctgTACAGTTGTGCCGGACTGGTGCTGTTATCCTTCATCTTTATCCTCCTCTCTCGCTTTTCTTTCAGGACCAAACCAACACTCTCTgggaaacaaaagaaacaacttCATCAAAAACTGGAGTATGTTCAGGAGGTAGTGAAGAGCAAAAAGAAAAATCTGTATGAGGAGTACCTGCGTCAGAGTGTGGGTGATCAGGACATGAACTGAGAGGGAATATAGCATTTAAGGATATGGACCGGACCAATACAGCACCCAGAAGTACCACTACACCGCATCTAATACTTCCTATAATGTAGCAGACGCAGAGAAGCTGTTTCTTGGGCACTTACATACTGCTGCTCCTCTAAGCTGTATTTCAGCATTAAATAATGGAGCTGTGGACCAATGCTATgtttcttttggtttttttttctcattgcagTGTAACAATTGTACTGTAAGGAATAGTTGAAGGACCACGTTTGGAGATGGGATAATTCAGAGCATGAATCCAATTGTTTGGCAGTcggtttttaatataataaatttttttttctgccatgtACCTAAAATACTCTATTACCAGAATGACTGAGAAATGAGAAGCCCTTCATTTGACATCAGATTCTTTTGACTTCTGGTGTTTATTCACACCGTTGGCACTTTTAATAGAAACATTGAAACTGGCTTTTGTATGACACGGTTTCCTACGTTTTATTACGTCCCATGCTATTGatgttacaataataaaataataaatgta

Function

symbol description
ehd3 Predicted to enable ATP binding activity; GTP binding activity; and calcium ion binding activity. Involved in cilium assembly. Predicted to be located in ciliary membrane and endosome. Predicted to be active in cytoplasmic vesicle; perinuclear region of cytoplasm; and plasma membrane. Is expressed in eye; neuromast; photoreceptor cell; and retina. Orthologous to human EHD3 (EH domain containing 3).
si:ch211-11k18.4 Predicted to enable GTP binding activity. Predicted to be involved in endocytosis and endosomal transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane.

NR:

description
uncharacterized protein LOC101474882

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235802.1 False 2019 mRNA 0.46 13 19403562 19408684
XM_043235803.1 True 2023 mRNA 0.46 13 19403562 19408684

Neighbor

gene id symbol gene type direction distance location
gdpd3a gdpd3a,LOC107590565,LOC107686997,LOC107729175,LOC107755582 coding upstream 4290 19394731 ~ 19399272 (+)
mapk3 mapk3,LOC107686994,LOC108411041,LOC107567791,LOC107690275,LOC108256206 coding upstream 10364 19385022 ~ 19393198 (+)
ppp4ca ppp4c,LOC107729194,LOC107755586,LOC107690278,LOC107590569,LOC107567834 coding upstream 22933 19376975 ~ 19380629 (+)
c3h17orf75 zgc:153240,LOC107690268,LOC107567861,LOC107729180,LOC107755588,LOC107590573,LOC107687012 coding upstream 106031 19292801 ~ 19297531 (+)
xylt1 xylt1,LOC107567884,LOC107729195,LOC107686990,LOC107590574,LOC107690267,LOC107733871,LOC108439755 coding upstream 141677 19203479 ~ 19261885 (+)
rabep2 LOC107690284,LOC107567756,LOC107755579,LOC107729174,LOC107687001 coding downstream 907 19409591 ~ 19417891 (+)
LOC122341749 LOC107687002 coding downstream 34536 19443220 ~ 19445897 (+)
hsd17b1 hsd17b1 coding downstream 38487 19447171 ~ 19449662 (+)
si:ch73-141c7.1 si:ch73-141c7.1,LOC107567723,LOC107590559,LOC107687003,LOC107729197,LOC107690287 coding downstream 42727 19451411 ~ 19454315 (+)
nkiras2 nkiras2,LOC107755561,LOC107590605,LOC107687022,LOC107729182 coding downstream 100404 19509088 ~ 19511507 (+)
G21215 NA non-coding upstream 98504 19304852 ~ 19305058 (+)
G21151 NA non-coding upstream 115913 19258917 ~ 19287649 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding upstream 549019 18854109 ~ 18854543 (+)
G21180 NA non-coding upstream 699879 18702584 ~ 18703683 (+)
LOC122331012 NA non-coding upstream 748847 18652361 ~ 18654715 (+)
G21239 LOC107687002 non-coding downstream 29323 19438007 ~ 19440646 (+)
LOC122341657 NA non-coding downstream 46742 19455426 ~ 19459635 (+)
G21269 aclya,LOC107687019,LOC107729187,LOC107590593,LOC107755575,LOC107567706,LOC107690323 non-coding downstream 62315 19470999 ~ 19472687 (+)
G21246 NA non-coding downstream 74817 19483501 ~ 19484384 (+)
G21275 NA non-coding downstream 81089 19489773 ~ 19490022 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 386 19399408 ~ 19403176 (+)
G21213 NA other upstream 111221 19291445 ~ 19292341 (+)
G21202 NA other upstream 410328 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 527435 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 561802 18828665 ~ 18841760 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 655586 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 686167 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 776851 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 1473514 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1887018 21295702 ~ 21414286 (+)

Expression


Co-expression Network